Experiment: KB with Isosafrole 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4318 and Psyr_4319 are separated by 486 nucleotides Psyr_4319 and Psyr_4320 are separated by 40 nucleotides
Psyr_4318: Psyr_4318 - regulatory protein, LysR:LysR, substrate-binding protein, at 5,168,966 to 5,169,964
_4318
Psyr_4319: Psyr_4319 - Silent information regulator protein Sir2, at 5,170,451 to 5,170,846
_4319
Psyr_4320: Psyr_4320 - ATP-dependent helicase HrpB, at 5,170,887 to 5,173,421
_4320
Position (kb) 5170
5171 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5169.451 kb on - strand, within Psyr_4318 at 5169.451 kb on - strand, within Psyr_4318 at 5169.451 kb on - strand, within Psyr_4318 at 5169.451 kb on - strand, within Psyr_4318 at 5169.451 kb on - strand, within Psyr_4318 at 5169.451 kb on - strand, within Psyr_4318 at 5169.451 kb on - strand, within Psyr_4318 at 5169.456 kb on + strand, within Psyr_4318 at 5169.456 kb on + strand, within Psyr_4318 at 5169.456 kb on + strand, within Psyr_4318 at 5169.456 kb on + strand, within Psyr_4318 at 5169.457 kb on - strand, within Psyr_4318 at 5169.457 kb on - strand, within Psyr_4318 at 5169.457 kb on - strand, within Psyr_4318 at 5169.457 kb on - strand, within Psyr_4318 at 5169.479 kb on + strand, within Psyr_4318 at 5169.479 kb on + strand, within Psyr_4318 at 5169.479 kb on + strand, within Psyr_4318 at 5169.479 kb on + strand, within Psyr_4318 at 5169.479 kb on + strand, within Psyr_4318 at 5169.479 kb on + strand, within Psyr_4318 at 5169.479 kb on + strand, within Psyr_4318 at 5169.479 kb on + strand, within Psyr_4318 at 5169.480 kb on - strand, within Psyr_4318 at 5169.480 kb on - strand, within Psyr_4318 at 5169.480 kb on - strand, within Psyr_4318 at 5169.480 kb on - strand, within Psyr_4318 at 5169.480 kb on - strand, within Psyr_4318 at 5169.480 kb on - strand, within Psyr_4318 at 5169.480 kb on - strand, within Psyr_4318 at 5169.480 kb on - strand, within Psyr_4318 at 5169.480 kb on - strand, within Psyr_4318 at 5169.480 kb on - strand, within Psyr_4318 at 5169.480 kb on - strand, within Psyr_4318 at 5169.480 kb on - strand, within Psyr_4318 at 5169.481 kb on + strand, within Psyr_4318 at 5169.481 kb on + strand, within Psyr_4318 at 5169.481 kb on + strand, within Psyr_4318 at 5169.481 kb on + strand, within Psyr_4318 at 5169.482 kb on - strand, within Psyr_4318 at 5169.482 kb on - strand, within Psyr_4318 at 5169.482 kb on - strand, within Psyr_4318 at 5169.501 kb on + strand, within Psyr_4318 at 5169.501 kb on + strand, within Psyr_4318 at 5169.741 kb on - strand, within Psyr_4318 at 5169.741 kb on - strand, within Psyr_4318 at 5169.741 kb on - strand, within Psyr_4318 at 5169.773 kb on + strand, within Psyr_4318 at 5169.773 kb on + strand, within Psyr_4318 at 5169.773 kb on + strand, within Psyr_4318 at 5169.773 kb on + strand, within Psyr_4318 at 5169.773 kb on + strand, within Psyr_4318 at 5169.774 kb on - strand, within Psyr_4318 at 5169.774 kb on - strand, within Psyr_4318 at 5169.774 kb on - strand, within Psyr_4318 at 5169.774 kb on - strand at 5169.775 kb on + strand, within Psyr_4318 at 5169.775 kb on + strand, within Psyr_4318 at 5169.775 kb on + strand, within Psyr_4318 at 5169.775 kb on + strand, within Psyr_4318 at 5169.775 kb on + strand, within Psyr_4318 at 5169.775 kb on + strand, within Psyr_4318 at 5169.776 kb on - strand, within Psyr_4318 at 5169.776 kb on - strand, within Psyr_4318 at 5169.776 kb on - strand, within Psyr_4318 at 5169.776 kb on - strand, within Psyr_4318 at 5169.776 kb on - strand, within Psyr_4318 at 5169.821 kb on + strand, within Psyr_4318 at 5169.821 kb on + strand, within Psyr_4318 at 5169.822 kb on - strand, within Psyr_4318 at 5169.854 kb on - strand, within Psyr_4318 at 5169.891 kb on + strand at 5169.958 kb on - strand at 5169.958 kb on - strand at 5169.958 kb on - strand at 5169.958 kb on - strand at 5169.958 kb on - strand at 5169.958 kb on - strand at 5169.958 kb on - strand at 5169.959 kb on + strand at 5169.959 kb on + strand at 5169.959 kb on + strand at 5169.959 kb on + strand at 5169.959 kb on + strand at 5169.960 kb on - strand at 5169.960 kb on - strand at 5169.960 kb on - strand at 5169.960 kb on - strand at 5169.960 kb on - strand at 5169.963 kb on - strand at 5169.963 kb on - strand at 5170.021 kb on + strand at 5170.021 kb on + strand at 5170.021 kb on + strand at 5170.021 kb on + strand at 5170.021 kb on + strand at 5170.021 kb on + strand at 5170.021 kb on + strand at 5170.021 kb on + strand at 5170.021 kb on + strand at 5170.021 kb on + strand at 5170.021 kb on + strand at 5170.021 kb on + strand at 5170.021 kb on + strand at 5170.022 kb on - strand at 5170.022 kb on - strand at 5170.022 kb on - strand at 5170.022 kb on - strand at 5170.022 kb on - strand at 5170.022 kb on - strand at 5170.031 kb on + strand at 5170.031 kb on + strand at 5170.032 kb on - strand at 5170.072 kb on + strand at 5170.072 kb on + strand at 5170.073 kb on - strand at 5170.073 kb on - strand at 5170.073 kb on - strand at 5170.073 kb on - strand at 5170.073 kb on - strand at 5170.073 kb on - strand at 5170.109 kb on + strand at 5170.109 kb on + strand at 5170.109 kb on + strand at 5170.110 kb on - strand at 5170.114 kb on + strand at 5170.130 kb on + strand at 5170.131 kb on - strand at 5170.131 kb on - strand at 5170.175 kb on + strand at 5170.196 kb on + strand at 5170.196 kb on + strand at 5170.254 kb on + strand at 5170.255 kb on - strand at 5170.378 kb on - strand at 5170.452 kb on + strand at 5170.452 kb on + strand at 5170.452 kb on + strand at 5170.453 kb on - strand at 5170.453 kb on - strand at 5170.502 kb on + strand, within Psyr_4319 at 5170.502 kb on + strand, within Psyr_4319 at 5170.502 kb on + strand, within Psyr_4319 at 5170.502 kb on + strand, within Psyr_4319 at 5170.502 kb on + strand, within Psyr_4319 at 5170.502 kb on + strand, within Psyr_4319 at 5170.502 kb on + strand, within Psyr_4319 at 5170.502 kb on + strand, within Psyr_4319 at 5170.502 kb on + strand, within Psyr_4319 at 5170.502 kb on + strand, within Psyr_4319 at 5170.502 kb on + strand, within Psyr_4319 at 5170.502 kb on + strand, within Psyr_4319 at 5170.503 kb on - strand, within Psyr_4319 at 5170.503 kb on - strand, within Psyr_4319 at 5170.503 kb on - strand, within Psyr_4319 at 5170.503 kb on - strand, within Psyr_4319 at 5170.503 kb on - strand, within Psyr_4319 at 5170.503 kb on - strand, within Psyr_4319 at 5170.503 kb on - strand, within Psyr_4319 at 5170.503 kb on - strand, within Psyr_4319 at 5170.503 kb on - strand, within Psyr_4319 at 5170.503 kb on - strand, within Psyr_4319 at 5170.503 kb on - strand, within Psyr_4319 at 5170.503 kb on - strand, within Psyr_4319 at 5170.503 kb on - strand, within Psyr_4319 at 5170.564 kb on + strand, within Psyr_4319 at 5170.564 kb on + strand, within Psyr_4319 at 5170.564 kb on + strand, within Psyr_4319 at 5170.565 kb on - strand, within Psyr_4319 at 5170.565 kb on - strand, within Psyr_4319 at 5170.566 kb on + strand, within Psyr_4319 at 5170.567 kb on - strand, within Psyr_4319 at 5170.567 kb on - strand, within Psyr_4319 at 5170.622 kb on - strand, within Psyr_4319 at 5170.658 kb on + strand, within Psyr_4319 at 5170.713 kb on + strand, within Psyr_4319 at 5170.713 kb on + strand, within Psyr_4319 at 5170.713 kb on + strand, within Psyr_4319 at 5170.714 kb on - strand, within Psyr_4319 at 5170.714 kb on - strand, within Psyr_4319 at 5170.714 kb on - strand, within Psyr_4319 at 5170.726 kb on + strand, within Psyr_4319 at 5170.746 kb on + strand, within Psyr_4319 at 5170.746 kb on + strand, within Psyr_4319 at 5170.747 kb on - strand, within Psyr_4319 at 5170.747 kb on - strand, within Psyr_4319 at 5170.747 kb on - strand, within Psyr_4319 at 5170.747 kb on - strand, within Psyr_4319 at 5170.747 kb on - strand, within Psyr_4319 at 5170.747 kb on - strand, within Psyr_4319 at 5170.863 kb on - strand at 5170.869 kb on + strand at 5170.876 kb on + strand at 5170.877 kb on - strand at 5170.888 kb on + strand at 5170.888 kb on + strand at 5170.889 kb on - strand at 5170.889 kb on - strand at 5170.917 kb on - strand at 5170.948 kb on + strand at 5170.993 kb on + strand at 5170.993 kb on + strand at 5170.993 kb on + strand at 5170.993 kb on + strand at 5170.993 kb on + strand at 5170.993 kb on + strand at 5170.994 kb on - strand at 5170.994 kb on - strand at 5170.994 kb on - strand at 5170.994 kb on - strand at 5170.994 kb on - strand at 5171.314 kb on + strand, within Psyr_4320 at 5171.314 kb on + strand, within Psyr_4320 at 5171.586 kb on + strand, within Psyr_4320 at 5171.586 kb on + strand, within Psyr_4320 at 5171.586 kb on + strand, within Psyr_4320 at 5171.587 kb on - strand, within Psyr_4320 at 5171.587 kb on - strand, within Psyr_4320 at 5171.587 kb on - strand, within Psyr_4320 at 5171.587 kb on - strand, within Psyr_4320 at 5171.587 kb on - strand, within Psyr_4320 at 5171.683 kb on + strand, within Psyr_4320 at 5171.683 kb on + strand, within Psyr_4320 at 5171.684 kb on - strand, within Psyr_4320 at 5171.684 kb on - strand, within Psyr_4320 at 5171.684 kb on - strand, within Psyr_4320
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Isosafrole 10 mM remove 5,169,451 - Psyr_4318 0.49 +0.1 5,169,451 - Psyr_4318 0.49 +0.3 5,169,451 - Psyr_4318 0.49 +1.9 5,169,451 - Psyr_4318 0.49 +0.3 5,169,451 - Psyr_4318 0.49 -0.5 5,169,451 - Psyr_4318 0.49 +0.9 5,169,451 - Psyr_4318 0.49 +0.3 5,169,456 + Psyr_4318 0.49 +1.0 5,169,456 + Psyr_4318 0.49 -0.7 5,169,456 + Psyr_4318 0.49 +0.6 5,169,456 + Psyr_4318 0.49 +0.8 5,169,457 - Psyr_4318 0.49 -0.1 5,169,457 - Psyr_4318 0.49 +0.4 5,169,457 - Psyr_4318 0.49 -0.1 5,169,457 - Psyr_4318 0.49 +0.5 5,169,479 + Psyr_4318 0.51 -2.0 5,169,479 + Psyr_4318 0.51 +0.1 5,169,479 + Psyr_4318 0.51 +0.3 5,169,479 + Psyr_4318 0.51 -0.2 5,169,479 + Psyr_4318 0.51 +0.8 5,169,479 + Psyr_4318 0.51 -0.8 5,169,479 + Psyr_4318 0.51 -0.5 5,169,479 + Psyr_4318 0.51 -0.5 5,169,480 - Psyr_4318 0.51 +0.2 5,169,480 - Psyr_4318 0.51 -0.8 5,169,480 - Psyr_4318 0.51 -0.0 5,169,480 - Psyr_4318 0.51 -0.7 5,169,480 - Psyr_4318 0.51 +0.5 5,169,480 - Psyr_4318 0.51 -1.2 5,169,480 - Psyr_4318 0.51 +2.5 5,169,480 - Psyr_4318 0.51 -1.0 5,169,480 - Psyr_4318 0.51 +0.3 5,169,480 - Psyr_4318 0.51 -0.3 5,169,480 - Psyr_4318 0.51 -0.0 5,169,480 - Psyr_4318 0.51 -0.3 5,169,481 + Psyr_4318 0.52 -0.8 5,169,481 + Psyr_4318 0.52 +0.8 5,169,481 + Psyr_4318 0.52 -0.2 5,169,481 + Psyr_4318 0.52 +0.5 5,169,482 - Psyr_4318 0.52 +0.3 5,169,482 - Psyr_4318 0.52 -2.0 5,169,482 - Psyr_4318 0.52 +0.1 5,169,501 + Psyr_4318 0.54 -1.0 5,169,501 + Psyr_4318 0.54 +0.4 5,169,741 - Psyr_4318 0.78 +0.0 5,169,741 - Psyr_4318 0.78 +1.9 5,169,741 - Psyr_4318 0.78 +0.5 5,169,773 + Psyr_4318 0.81 +0.1 5,169,773 + Psyr_4318 0.81 +0.1 5,169,773 + Psyr_4318 0.81 +1.9 5,169,773 + Psyr_4318 0.81 -0.8 5,169,773 + Psyr_4318 0.81 -0.2 5,169,774 - Psyr_4318 0.81 +0.6 5,169,774 - Psyr_4318 0.81 +0.2 5,169,774 - Psyr_4318 0.81 -0.0 5,169,774 - +0.9 5,169,775 + Psyr_4318 0.81 -1.7 5,169,775 + Psyr_4318 0.81 -0.6 5,169,775 + Psyr_4318 0.81 +0.7 5,169,775 + Psyr_4318 0.81 +0.3 5,169,775 + Psyr_4318 0.81 +0.7 5,169,775 + Psyr_4318 0.81 +0.3 5,169,776 - Psyr_4318 0.81 +0.9 5,169,776 - Psyr_4318 0.81 -0.2 5,169,776 - Psyr_4318 0.81 -0.7 5,169,776 - Psyr_4318 0.81 +0.5 5,169,776 - Psyr_4318 0.81 -0.7 5,169,821 + Psyr_4318 0.86 -0.7 5,169,821 + Psyr_4318 0.86 +0.4 5,169,822 - Psyr_4318 0.86 -0.4 5,169,854 - Psyr_4318 0.89 +1.3 5,169,891 + -0.2 5,169,958 - -0.5 5,169,958 - -0.4 5,169,958 - +0.4 5,169,958 - +1.2 5,169,958 - -0.5 5,169,958 - -0.6 5,169,958 - -0.6 5,169,959 + -0.2 5,169,959 + -0.7 5,169,959 + +0.4 5,169,959 + +0.2 5,169,959 + -0.2 5,169,960 - -0.9 5,169,960 - +2.5 5,169,960 - -0.1 5,169,960 - +0.8 5,169,960 - +0.0 5,169,963 - -0.1 5,169,963 - +0.6 5,170,021 + -1.8 5,170,021 + +0.3 5,170,021 + -0.7 5,170,021 + -0.2 5,170,021 + -0.2 5,170,021 + -0.7 5,170,021 + +0.6 5,170,021 + -0.2 5,170,021 + +0.1 5,170,021 + +0.7 5,170,021 + -0.2 5,170,021 + +0.1 5,170,021 + -1.2 5,170,022 - +0.8 5,170,022 - +2.5 5,170,022 - -0.4 5,170,022 - -0.9 5,170,022 - -0.2 5,170,022 - -0.5 5,170,031 + -0.2 5,170,031 + +0.5 5,170,032 - +0.4 5,170,072 + +0.1 5,170,072 + -0.5 5,170,073 - +0.0 5,170,073 - +0.3 5,170,073 - -1.7 5,170,073 - -1.2 5,170,073 - -0.8 5,170,073 - -0.2 5,170,109 + -0.4 5,170,109 + -0.4 5,170,109 + -0.7 5,170,110 - +0.9 5,170,114 + -1.3 5,170,130 + -0.6 5,170,131 - +0.6 5,170,131 - -0.7 5,170,175 + -0.2 5,170,196 + +0.2 5,170,196 + +1.2 5,170,254 + -0.4 5,170,255 - -0.9 5,170,378 - +0.4 5,170,452 + +0.3 5,170,452 + +1.3 5,170,452 + -0.8 5,170,453 - -0.1 5,170,453 - +0.5 5,170,502 + Psyr_4319 0.13 +0.9 5,170,502 + Psyr_4319 0.13 +1.5 5,170,502 + Psyr_4319 0.13 +0.3 5,170,502 + Psyr_4319 0.13 +3.3 5,170,502 + Psyr_4319 0.13 -0.6 5,170,502 + Psyr_4319 0.13 -1.5 5,170,502 + Psyr_4319 0.13 +0.5 5,170,502 + Psyr_4319 0.13 +0.2 5,170,502 + Psyr_4319 0.13 -0.2 5,170,502 + Psyr_4319 0.13 -0.9 5,170,502 + Psyr_4319 0.13 -0.7 5,170,502 + Psyr_4319 0.13 +0.4 5,170,503 - Psyr_4319 0.13 +2.9 5,170,503 - Psyr_4319 0.13 +0.2 5,170,503 - Psyr_4319 0.13 +0.3 5,170,503 - Psyr_4319 0.13 -1.0 5,170,503 - Psyr_4319 0.13 +0.4 5,170,503 - Psyr_4319 0.13 +0.3 5,170,503 - Psyr_4319 0.13 -0.3 5,170,503 - Psyr_4319 0.13 +0.5 5,170,503 - Psyr_4319 0.13 +0.1 5,170,503 - Psyr_4319 0.13 -0.8 5,170,503 - Psyr_4319 0.13 -0.3 5,170,503 - Psyr_4319 0.13 +0.2 5,170,503 - Psyr_4319 0.13 +1.0 5,170,564 + Psyr_4319 0.29 +0.5 5,170,564 + Psyr_4319 0.29 +0.6 5,170,564 + Psyr_4319 0.29 +0.1 5,170,565 - Psyr_4319 0.29 +0.1 5,170,565 - Psyr_4319 0.29 +0.7 5,170,566 + Psyr_4319 0.29 +0.1 5,170,567 - Psyr_4319 0.29 +0.9 5,170,567 - Psyr_4319 0.29 -0.1 5,170,622 - Psyr_4319 0.43 +1.8 5,170,658 + Psyr_4319 0.52 +0.3 5,170,713 + Psyr_4319 0.66 +0.5 5,170,713 + Psyr_4319 0.66 +1.3 5,170,713 + Psyr_4319 0.66 -0.5 5,170,714 - Psyr_4319 0.66 -0.3 5,170,714 - Psyr_4319 0.66 +0.9 5,170,714 - Psyr_4319 0.66 -0.7 5,170,726 + Psyr_4319 0.69 +0.4 5,170,746 + Psyr_4319 0.74 -0.5 5,170,746 + Psyr_4319 0.74 -2.9 5,170,747 - Psyr_4319 0.75 -0.1 5,170,747 - Psyr_4319 0.75 -0.2 5,170,747 - Psyr_4319 0.75 +1.1 5,170,747 - Psyr_4319 0.75 +0.4 5,170,747 - Psyr_4319 0.75 +0.1 5,170,747 - Psyr_4319 0.75 -0.1 5,170,863 - +0.8 5,170,869 + +0.2 5,170,876 + -0.2 5,170,877 - -0.1 5,170,888 + +0.6 5,170,888 + +1.9 5,170,889 - +0.2 5,170,889 - +0.5 5,170,917 - -0.2 5,170,948 + +0.7 5,170,993 + -0.2 5,170,993 + -1.1 5,170,993 + +0.9 5,170,993 + -1.1 5,170,993 + +1.3 5,170,993 + -0.2 5,170,994 - +0.2 5,170,994 - +0.0 5,170,994 - -0.0 5,170,994 - -0.2 5,170,994 - +0.1 5,171,314 + Psyr_4320 0.17 +0.1 5,171,314 + Psyr_4320 0.17 +0.7 5,171,586 + Psyr_4320 0.28 -0.3 5,171,586 + Psyr_4320 0.28 +0.2 5,171,586 + Psyr_4320 0.28 +0.4 5,171,587 - Psyr_4320 0.28 +1.5 5,171,587 - Psyr_4320 0.28 +1.2 5,171,587 - Psyr_4320 0.28 -0.2 5,171,587 - Psyr_4320 0.28 +1.0 5,171,587 - Psyr_4320 0.28 -0.0 5,171,683 + Psyr_4320 0.31 -0.9 5,171,683 + Psyr_4320 0.31 +1.1 5,171,684 - Psyr_4320 0.31 -0.7 5,171,684 - Psyr_4320 0.31 +0.3 5,171,684 - Psyr_4320 0.31 +0.0
Or see this region's nucleotide sequence