Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2772

Experiment: KB with Isosafrole 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Isosafrole 10 mM
3,356,010	+		Psyr_2771	0.15	-1.3
3,356,010	+		Psyr_2771	0.15	-1.0
3,356,011	-		Psyr_2771	0.16	-3.2
3,356,069	+		Psyr_2771	0.24	-1.4
3,356,070	-		Psyr_2771	0.24	-1.5
3,356,070	-		Psyr_2771	0.24	-0.0
3,356,074	-		Psyr_2771	0.25	-0.9
3,356,106	+		Psyr_2771	0.29	-0.7
3,356,109	+		Psyr_2771	0.30	+1.2
3,356,208	-		Psyr_2771	0.44	-0.4
3,356,239	+		Psyr_2771	0.49	+1.2
3,356,328	+		Psyr_2771	0.62	-1.2
3,356,328	+		Psyr_2771	0.62	-1.2
3,356,328	+		Psyr_2771	0.62	+0.0
3,356,328	+		Psyr_2771	0.62	+0.4
3,356,328	+		Psyr_2771	0.62	+1.0
3,356,328	+		Psyr_2771	0.62	+1.7
3,356,329	-		Psyr_2771	0.62	-0.4
3,356,329	-		Psyr_2771	0.62	+0.1
3,356,329	-		Psyr_2771	0.62	-1.0
3,356,329	-		Psyr_2771	0.62	-0.0
3,356,357	+		Psyr_2771	0.66	-1.0
3,356,393	+		Psyr_2771	0.71	-1.0
3,356,394	-		Psyr_2771	0.71	+0.0
3,356,454	+		Psyr_2771	0.80	+0.6
3,356,455	-		Psyr_2771	0.80	-0.6
3,356,455	-		Psyr_2771	0.80	-0.5
3,356,485	+		Psyr_2771	0.85	+0.3
3,356,486	-		Psyr_2771	0.85	-0.0
3,356,486	-		Psyr_2771	0.85	-0.9
3,356,544	-				-1.8
3,356,605	-				+0.2
3,356,619	+				-0.4
3,356,619	+				+1.1
3,356,619	+				-0.1
3,356,649	-				+0.1
3,356,667	-				-0.7
3,356,715	+				+0.5
3,356,716	-				+0.2
3,356,723	+				+0.5
3,356,724	-				-1.6
3,356,724	-				-0.5
3,356,724	-				-1.0
3,356,817	+				-0.3
3,356,957	-				+0.2
3,357,067	+				+0.0
3,357,067	+				+0.9
3,357,067	+				-0.4
3,357,067	+				+1.2
3,357,068	-				-1.5
3,357,094	-				+0.4
3,357,178	-				+0.1
3,357,180	-				-1.0
3,357,180	-				-1.3
3,357,201	-				-0.2
3,357,292	+		Psyr_2772	0.11	+0.9
3,357,292	+		Psyr_2772	0.11	-0.4
3,357,292	+		Psyr_2772	0.11	-0.0
3,357,293	-		Psyr_2772	0.11	-0.9
3,357,293	-		Psyr_2772	0.11	-0.3
3,357,293	-		Psyr_2772	0.11	-0.2
3,357,293	-		Psyr_2772	0.11	-0.8
3,357,361	+		Psyr_2772	0.13	-0.1
3,357,410	+		Psyr_2772	0.14	+0.2
3,357,458	+		Psyr_2772	0.15	-0.8
3,357,459	-		Psyr_2772	0.15	+1.6
3,357,480	+		Psyr_2772	0.16	+0.5
3,357,480	+		Psyr_2772	0.16	-0.2
3,357,480	+		Psyr_2772	0.16	+0.2
3,357,481	-		Psyr_2772	0.16	-0.5
3,357,684	-		Psyr_2772	0.22	-1.1
3,357,775	-		Psyr_2772	0.24	+0.7
3,357,775	-		Psyr_2772	0.24	-0.9
3,357,850	+		Psyr_2772	0.26	+0.5
3,357,851	-		Psyr_2772	0.26	-1.5
3,357,889	+		Psyr_2772	0.27	+0.2
3,357,889	+		Psyr_2772	0.27	-0.5
3,357,889	+		Psyr_2772	0.27	+0.8
3,357,889	+		Psyr_2772	0.27	+1.6
3,357,889	+		Psyr_2772	0.27	-0.3
3,357,889	+		Psyr_2772	0.27	-0.9
3,357,890	-		Psyr_2772	0.27	+0.2
3,357,890	-		Psyr_2772	0.27	-1.0
3,358,280	+		Psyr_2772	0.38	-1.3
3,358,281	-		Psyr_2772	0.38	-2.3
3,358,336	-		Psyr_2772	0.40	-1.4
3,358,396	+		Psyr_2772	0.42	+1.2
3,358,397	-		Psyr_2772	0.42	-1.0
3,358,438	+		Psyr_2772	0.43	+1.1
3,358,438	+		Psyr_2772	0.43	-0.6
3,358,438	+		Psyr_2772	0.43	+1.1
3,358,439	-		Psyr_2772	0.43	-1.5
3,358,439	-		Psyr_2772	0.43	-2.1
3,358,439	-		Psyr_2772	0.43	+0.8
3,358,439	-		Psyr_2772	0.43	-1.1
3,358,439	-		Psyr_2772	0.43	-0.1
3,358,522	+		Psyr_2772	0.45	-0.8
3,358,522	+		Psyr_2772	0.45	-1.4
3,358,522	+		Psyr_2772	0.45	-0.1
3,358,522	+		Psyr_2772	0.45	+0.9
3,358,522	+		Psyr_2772	0.45	-0.0
3,358,523	-		Psyr_2772	0.45	-1.7
3,358,568	+		Psyr_2772	0.46	-0.8
3,358,569	-		Psyr_2772	0.46	+0.0
3,358,637	+		Psyr_2772	0.48	-1.3
3,358,690	+		Psyr_2772	0.50	-0.2
3,358,690	+		Psyr_2772	0.50	+0.7
3,358,691	-		Psyr_2772	0.50	-1.3
3,358,691	-		Psyr_2772	0.50	-1.0
3,358,691	-		Psyr_2772	0.50	+1.1
3,358,691	-		Psyr_2772	0.50	-0.5
3,358,711	+		Psyr_2772	0.50	+0.2
3,358,724	+		Psyr_2772	0.51	-0.3
3,358,733	-		Psyr_2772	0.51	-0.6
3,358,782	-		Psyr_2772	0.52	-0.6
3,358,785	+		Psyr_2772	0.52	-2.0
3,358,785	+		Psyr_2772	0.52	-0.2
3,358,785	+		Psyr_2772	0.52	+0.2
3,358,785	+		Psyr_2772	0.52	+1.2
3,358,785	+		Psyr_2772	0.52	-0.3
3,358,785	+		Psyr_2772	0.52	-0.2
3,358,785	+		Psyr_2772	0.52	+0.6
3,358,785	+		Psyr_2772	0.52	-0.4
3,358,785	+		Psyr_2772	0.52	-0.0
3,358,785	+		Psyr_2772	0.52	+0.4
3,358,786	-		Psyr_2772	0.52	-1.3
3,358,786	-		Psyr_2772	0.52	-0.3
3,358,786	-		Psyr_2772	0.52	-0.8
3,358,786	-		Psyr_2772	0.52	-1.4
3,358,786	-		Psyr_2772	0.52	-1.8
3,358,786	-		Psyr_2772	0.52	-1.5
3,358,786	-		Psyr_2772	0.52	+0.6
3,358,786	-		Psyr_2772	0.52	-1.7
3,358,786	-		Psyr_2772	0.52	-0.8
3,358,786	-		Psyr_2772	0.52	-0.2
3,358,786	-		Psyr_2772	0.52	+0.3
3,358,786	-		Psyr_2772	0.52	+0.2
3,358,838	-		Psyr_2772	0.54	-1.3
3,358,963	-		Psyr_2772	0.57	-1.5
3,358,966	-		Psyr_2772	0.57	-0.3
3,358,966	-		Psyr_2772	0.57	-1.5
3,358,966	-		Psyr_2772	0.57	-0.7
3,358,966	-		Psyr_2772	0.57	-1.6
3,358,966	-		Psyr_2772	0.57	-0.4
3,358,966	-		Psyr_2772	0.57	+0.7
3,358,966	-		Psyr_2772	0.57	-0.7
3,358,966	-		Psyr_2772	0.57	-1.0
3,359,041	+		Psyr_2772	0.60	-0.4
3,359,041	+		Psyr_2772	0.60	+0.3
3,359,042	-		Psyr_2772	0.60	-1.0
3,359,042	-		Psyr_2772	0.60	-0.4
3,359,057	+		Psyr_2772	0.60	-0.2
3,359,239	+		Psyr_2772	0.65	-0.2
3,359,239	+		Psyr_2772	0.65	+1.8
3,359,240	-		Psyr_2772	0.65	-0.2
3,359,240	-		Psyr_2772	0.65	-1.8
3,359,281	+		Psyr_2772	0.66	-2.5
3,359,282	-		Psyr_2772	0.66	-0.4
3,359,282	-		Psyr_2772	0.66	+0.8
3,359,282	-		Psyr_2772	0.66	+0.8
3,359,350	+		Psyr_2772	0.68	+1.0
3,359,351	-		Psyr_2772	0.68	-0.8
3,359,411	-		Psyr_2772	0.70	-1.4
3,359,411	-		Psyr_2772	0.70	+0.1
3,359,438	+		Psyr_2772	0.71	-0.2
3,359,505	+		Psyr_2772	0.72	-0.0
3,359,506	-		Psyr_2772	0.72	-1.4
3,359,543	-		Psyr_2772	0.74	-0.9
3,359,632	+		Psyr_2772	0.76	-1.1
3,359,632	+		Psyr_2772	0.76	+0.9
3,359,632	+		Psyr_2772	0.76	-1.0
3,359,632	+		Psyr_2772	0.76	-0.7
3,359,633	-		Psyr_2772	0.76	-0.7
3,359,633	-		Psyr_2772	0.76	+0.5
3,359,633	-		Psyr_2772	0.76	-2.1
3,359,633	-		Psyr_2772	0.76	+0.2
3,359,716	+		Psyr_2772	0.78	-0.4
3,359,716	+		Psyr_2772	0.78	+0.2
3,359,717	-		Psyr_2772	0.78	+0.3
3,359,717	-		Psyr_2772	0.78	+1.0
3,359,717	-		Psyr_2772	0.78	-0.1
3,359,717	-		Psyr_2772	0.78	+1.6
3,359,803	+		Psyr_2772	0.81	-1.1
3,359,803	+		Psyr_2772	0.81	+0.9
3,359,803	+		Psyr_2772	0.81	-0.1
3,359,804	-		Psyr_2772	0.81	-1.1
3,359,804	-		Psyr_2772	0.81	-0.5
3,359,804	-		Psyr_2772	0.81	+1.0
3,359,804	-		Psyr_2772	0.81	-1.4
3,360,022	+		Psyr_2772	0.87	-1.0
3,360,023	-		Psyr_2772	0.87	+0.4
3,360,023	-		Psyr_2772	0.87	+0.2
3,360,023	-		Psyr_2772	0.87	-0.5
3,360,075	+		Psyr_2772	0.88	-0.5
3,360,232	+				+1.0
3,360,232	+				-0.8
3,360,232	+				+0.3
3,360,232	+				-0.1
3,360,233	-				+1.4
3,360,233	-				-0.6
3,360,233	-				-0.7
3,360,325	+				-1.8
3,360,325	+				+0.2
3,360,325	+				-0.9
3,360,325	+				+0.1
3,360,325	+				-0.4
3,360,325	+				+1.2
3,360,325	+				-0.3
3,360,326	-				-0.8
3,360,326	-				+0.3
3,360,326	-				-1.2
3,360,326	-				+0.5
3,360,326	-				+0.0
3,360,326	-				+0.2
3,360,326	-				-0.3
3,360,326	-				+0.0
3,360,326	-				-0.4
3,360,326	-				-0.5
3,360,326	-				-1.1
3,360,326	-				+0.8
3,360,327	+				-0.5
3,360,327	+				+0.9
3,360,327	+				-0.2
3,360,327	+				-1.5
3,360,327	+				-0.6
3,360,327	+				+1.9
3,360,327	+				-0.2
3,360,327	+				-0.2
3,360,327	+				-0.7
3,360,327	+				+0.2
3,360,327	+				-1.0
3,360,327	+				+0.1
3,360,327	+				+0.2
3,360,327	+				+0.8
3,360,327	+				+0.2
3,360,327	+				-0.4
3,360,328	-				-0.6
3,360,328	-				+0.1
3,360,328	-				+0.7
3,360,328	-				-1.9
3,360,328	-				+0.1
3,360,328	-				-1.4
3,360,370	-				+1.1
3,360,370	-				+2.2
3,360,508	-				+0.3
3,360,543	-				+0.2
3,360,548	+				-0.4
3,360,649	-		Psyr_2773	0.17	+0.5
3,360,657	+		Psyr_2773	0.18	-1.5
3,360,657	+		Psyr_2773	0.18	-0.9
3,360,658	-		Psyr_2773	0.18	+1.2
3,360,658	-		Psyr_2773	0.18	+0.4
3,360,658	-		Psyr_2773	0.18	+0.8
3,360,658	-		Psyr_2773	0.18	-0.4
3,360,716	+		Psyr_2773	0.28	-0.9
3,360,717	-		Psyr_2773	0.28	+0.3
3,360,717	-		Psyr_2773	0.28	-1.6
3,360,813	+		Psyr_2773	0.43	-1.5
3,360,814	-		Psyr_2773	0.44	+0.2
3,360,814	-		Psyr_2773	0.44	+0.8
3,360,814	-		Psyr_2773	0.44	+0.2
3,360,814	-		Psyr_2773	0.44	-1.1
3,360,814	-		Psyr_2773	0.44	+0.3
3,360,814	-		Psyr_2773	0.44	+0.9
3,360,817	+		Psyr_2773	0.44	-0.4
3,360,818	-		Psyr_2773	0.44	-0.2
3,360,860	+		Psyr_2773	0.51	-1.6
3,360,860	+		Psyr_2773	0.51	+0.2
3,360,860	+		Psyr_2773	0.51	+0.4
3,360,861	-		Psyr_2773	0.51	-1.3
3,360,861	-		Psyr_2773	0.51	-0.1
3,360,861	-		Psyr_2773	0.51	-0.5
3,360,861	-		Psyr_2773	0.51	+0.0
3,360,861	-		Psyr_2773	0.51	-1.2
3,360,896	-		Psyr_2773	0.57	-0.1
3,360,900	+		Psyr_2773	0.58	+0.2
3,360,900	+		Psyr_2773	0.58	-1.4
3,360,900	+		Psyr_2773	0.58	-0.7
3,360,948	+		Psyr_2773	0.66	-0.4
3,360,948	+		Psyr_2773	0.66	-2.0
3,361,046	-		Psyr_2773	0.82	-0.9
3,361,046	-		Psyr_2773	0.82	-0.2
3,361,061	+		Psyr_2773	0.84	-1.4
3,361,067	+		Psyr_2773	0.85	-2.0
3,361,071	-		Psyr_2773	0.86	+1.4
3,361,107	+				-0.8
3,361,108	-				+0.5
3,361,142	+				+2.2
3,361,143	-				-0.9
3,361,189	-				+0.6
3,361,189	-				+1.2
3,361,189	-				-0.5
3,361,189	-				+2.2
3,361,204	+				-1.1
3,361,205	-				-0.5
3,361,205	-				+1.2
3,361,306	+		Psyr_2774	0.21	+0.1
3,361,306	+		Psyr_2774	0.21	+0.2
3,361,307	-		Psyr_2774	0.21	+0.5
3,361,344	-		Psyr_2774	0.27	+2.0