Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1552

Experiment: KB with Isosafrole 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1550 and Psyr_1551 are separated by 28 nucleotidesPsyr_1551 and Psyr_RNA25 are separated by 92 nucleotidesPsyr_RNA25 and Psyr_1552 are separated by 58 nucleotidesPsyr_1552 and Psyr_1553 are separated by 602 nucleotides Psyr_1550: Psyr_1550 - Beta-lactamase-like protein, at 1,743,360 to 1,744,118 _1550 Psyr_1551: Psyr_1551 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 1,744,147 to 1,744,857 _1551 Psyr_RNA25: Psyr_RNA25 - tRNA-Ser, at 1,744,950 to 1,745,039 _RNA25 Psyr_1552: Psyr_1552 - CDS, at 1,745,098 to 1,745,496 _1552 Psyr_1553: Psyr_1553 - hypothetical protein, at 1,746,099 to 1,746,434 _1553 Position (kb) 1745 1746Strain fitness (log2 ratio) -2 -1 0 1 2at 1744.109 kb on + strandat 1744.125 kb on + strandat 1744.125 kb on + strandat 1744.125 kb on + strandat 1744.125 kb on + strandat 1744.125 kb on + strandat 1744.129 kb on + strandat 1744.129 kb on + strandat 1744.129 kb on + strandat 1744.129 kb on + strandat 1744.934 kb on + strandat 1744.996 kb on + strand, within Psyr_RNA25at 1745.012 kb on + strand, within Psyr_RNA25at 1745.040 kb on + strandat 1745.046 kb on + strandat 1745.047 kb on - strandat 1745.069 kb on + strandat 1745.080 kb on + strandat 1745.092 kb on + strandat 1745.113 kb on + strandat 1745.114 kb on - strandat 1745.187 kb on + strand, within Psyr_1552at 1745.187 kb on + strand, within Psyr_1552at 1745.187 kb on + strand, within Psyr_1552at 1745.187 kb on + strand, within Psyr_1552at 1745.187 kb on + strand, within Psyr_1552at 1745.187 kb on + strand, within Psyr_1552at 1745.188 kb on - strand, within Psyr_1552at 1745.188 kb on - strand, within Psyr_1552at 1745.188 kb on - strand, within Psyr_1552at 1745.188 kb on - strand, within Psyr_1552at 1745.188 kb on - strand, within Psyr_1552at 1745.262 kb on + strand, within Psyr_1552at 1745.262 kb on + strand, within Psyr_1552at 1745.263 kb on - strand, within Psyr_1552at 1745.263 kb on - strand, within Psyr_1552at 1745.263 kb on - strand, within Psyr_1552at 1745.263 kb on - strand, within Psyr_1552at 1745.263 kb on - strand, within Psyr_1552at 1745.269 kb on + strand, within Psyr_1552at 1745.269 kb on + strand, within Psyr_1552at 1745.269 kb on + strand, within Psyr_1552at 1745.269 kb on + strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.278 kb on - strand, within Psyr_1552at 1745.316 kb on + strand, within Psyr_1552at 1745.316 kb on + strand, within Psyr_1552at 1745.317 kb on - strand, within Psyr_1552at 1745.317 kb on - strand, within Psyr_1552at 1745.317 kb on - strand, within Psyr_1552at 1745.498 kb on + strandat 1745.498 kb on + strandat 1745.499 kb on - strandat 1745.499 kb on - strandat 1745.499 kb on - strandat 1745.551 kb on - strandat 1745.551 kb on - strandat 1745.551 kb on - strandat 1745.551 kb on - strandat 1745.584 kb on + strandat 1745.613 kb on + strandat 1745.613 kb on + strandat 1745.614 kb on - strandat 1745.655 kb on + strandat 1745.655 kb on + strandat 1745.700 kb on + strandat 1745.785 kb on - strandat 1745.875 kb on - strandat 1745.901 kb on + strandat 1745.950 kb on + strandat 1745.950 kb on + strandat 1745.950 kb on + strandat 1745.950 kb on + strandat 1745.950 kb on + strandat 1745.950 kb on + strandat 1745.950 kb on + strandat 1745.951 kb on - strandat 1745.951 kb on - strandat 1745.951 kb on - strandat 1745.951 kb on - strandat 1745.951 kb on - strandat 1746.053 kb on - strandat 1746.056 kb on - strandat 1746.056 kb on - strandat 1746.056 kb on - strandat 1746.056 kb on - strandat 1746.087 kb on + strandat 1746.110 kb on + strandat 1746.158 kb on + strand, within Psyr_1553at 1746.200 kb on + strand, within Psyr_1553at 1746.200 kb on + strand, within Psyr_1553at 1746.201 kb on - strand, within Psyr_1553at 1746.201 kb on - strand, within Psyr_1553at 1746.292 kb on + strand, within Psyr_1553at 1746.348 kb on - strand, within Psyr_1553at 1746.348 kb on - strand, within Psyr_1553at 1746.351 kb on + strand, within Psyr_1553at 1746.351 kb on + strand, within Psyr_1553at 1746.351 kb on + strand, within Psyr_1553at 1746.352 kb on - strand, within Psyr_1553at 1746.352 kb on - strand, within Psyr_1553at 1746.352 kb on - strand, within Psyr_1553at 1746.352 kb on - strand, within Psyr_1553at 1746.354 kb on - strand, within Psyr_1553at 1746.422 kb on + strandat 1746.423 kb on - strandat 1746.459 kb on + strandat 1746.470 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Isosafrole 10 mM
remove
1,744,109 + +0.3
1,744,125 + -0.2
1,744,125 + +1.8
1,744,125 + +0.1
1,744,125 + +0.0
1,744,125 + +0.7
1,744,129 + -1.3
1,744,129 + -0.2
1,744,129 + +0.3
1,744,129 + -1.1
1,744,934 + -0.5
1,744,996 + Psyr_RNA25 0.51 -2.1
1,745,012 + Psyr_RNA25 0.69 +2.0
1,745,040 + +0.8
1,745,046 + +0.4
1,745,047 - -1.7
1,745,069 + -0.9
1,745,080 + -0.1
1,745,092 + -0.1
1,745,113 + +0.1
1,745,114 - +0.4
1,745,187 + Psyr_1552 0.22 -0.0
1,745,187 + Psyr_1552 0.22 -2.3
1,745,187 + Psyr_1552 0.22 -1.1
1,745,187 + Psyr_1552 0.22 +0.6
1,745,187 + Psyr_1552 0.22 -0.1
1,745,187 + Psyr_1552 0.22 +1.0
1,745,188 - Psyr_1552 0.23 +0.8
1,745,188 - Psyr_1552 0.23 -2.2
1,745,188 - Psyr_1552 0.23 +2.1
1,745,188 - Psyr_1552 0.23 -1.3
1,745,188 - Psyr_1552 0.23 +0.8
1,745,262 + Psyr_1552 0.41 -1.6
1,745,262 + Psyr_1552 0.41 +0.2
1,745,263 - Psyr_1552 0.41 -0.4
1,745,263 - Psyr_1552 0.41 +1.0
1,745,263 - Psyr_1552 0.41 -0.7
1,745,263 - Psyr_1552 0.41 -1.1
1,745,263 - Psyr_1552 0.41 -0.2
1,745,269 + Psyr_1552 0.43 +1.3
1,745,269 + Psyr_1552 0.43 -0.7
1,745,269 + Psyr_1552 0.43 -0.6
1,745,269 + Psyr_1552 0.43 +1.4
1,745,270 - Psyr_1552 0.43 +0.6
1,745,270 - Psyr_1552 0.43 +1.3
1,745,270 - Psyr_1552 0.43 +2.3
1,745,270 - Psyr_1552 0.43 +0.8
1,745,270 - Psyr_1552 0.43 -1.5
1,745,270 - Psyr_1552 0.43 -0.7
1,745,270 - Psyr_1552 0.43 +1.8
1,745,270 - Psyr_1552 0.43 +0.3
1,745,270 - Psyr_1552 0.43 +1.7
1,745,270 - Psyr_1552 0.43 -0.5
1,745,270 - Psyr_1552 0.43 +1.4
1,745,270 - Psyr_1552 0.43 -0.2
1,745,270 - Psyr_1552 0.43 +0.6
1,745,270 - Psyr_1552 0.43 -0.1
1,745,278 - Psyr_1552 0.45 -0.1
1,745,316 + Psyr_1552 0.55 +0.5
1,745,316 + Psyr_1552 0.55 -0.7
1,745,317 - Psyr_1552 0.55 +0.5
1,745,317 - Psyr_1552 0.55 -0.5
1,745,317 - Psyr_1552 0.55 -0.3
1,745,498 + -1.7
1,745,498 + -1.2
1,745,499 - -0.3
1,745,499 - +2.0
1,745,499 - +0.3
1,745,551 - +0.7
1,745,551 - +0.3
1,745,551 - -0.3
1,745,551 - +0.5
1,745,584 + +0.4
1,745,613 + -1.7
1,745,613 + -0.2
1,745,614 - -1.1
1,745,655 + -0.5
1,745,655 + -1.2
1,745,700 + -1.5
1,745,785 - -0.2
1,745,875 - +0.1
1,745,901 + +0.8
1,745,950 + -0.4
1,745,950 + +1.0
1,745,950 + -0.4
1,745,950 + +0.1
1,745,950 + +0.3
1,745,950 + -1.2
1,745,950 + +0.9
1,745,951 - -0.0
1,745,951 - -0.4
1,745,951 - -1.2
1,745,951 - -0.0
1,745,951 - -0.2
1,746,053 - +0.6
1,746,056 - -1.1
1,746,056 - +0.6
1,746,056 - +0.3
1,746,056 - +0.8
1,746,087 + -0.7
1,746,110 + -1.1
1,746,158 + Psyr_1553 0.18 +0.1
1,746,200 + Psyr_1553 0.30 -0.2
1,746,200 + Psyr_1553 0.30 -0.2
1,746,201 - Psyr_1553 0.30 -0.1
1,746,201 - Psyr_1553 0.30 -0.3
1,746,292 + Psyr_1553 0.57 +0.3
1,746,348 - Psyr_1553 0.74 -0.4
1,746,348 - Psyr_1553 0.74 -0.6
1,746,351 + Psyr_1553 0.75 -0.3
1,746,351 + Psyr_1553 0.75 +0.4
1,746,351 + Psyr_1553 0.75 +0.9
1,746,352 - Psyr_1553 0.75 -1.5
1,746,352 - Psyr_1553 0.75 -0.7
1,746,352 - Psyr_1553 0.75 -0.2
1,746,352 - Psyr_1553 0.75 -0.7
1,746,354 - Psyr_1553 0.76 -1.7
1,746,422 + +1.0
1,746,423 - -0.2
1,746,459 + +0.8
1,746,470 + -1.1

Or see this region's nucleotide sequence