Experiment: KB with Isosafrole 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0661 and Psyr_0662 are separated by 78 nucleotides Psyr_0662 and Psyr_0663 are separated by 77 nucleotides
Psyr_0661: Psyr_0661 - adenosine deaminase, at 749,365 to 750,318
_0661
Psyr_0662: Psyr_0662 - 2OG-Fe(II) oxygenase superfamily, at 750,397 to 751,362
_0662
Psyr_0663: Psyr_0663 - nucleoside-binding protein, at 751,440 to 752,534
_0663
Position (kb) 750
751
752 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 749.444 kb on + strand at 749.444 kb on + strand at 749.444 kb on + strand at 749.445 kb on - strand at 749.445 kb on - strand at 749.445 kb on - strand at 749.445 kb on - strand at 749.472 kb on - strand, within Psyr_0661 at 749.711 kb on + strand, within Psyr_0661 at 749.711 kb on + strand, within Psyr_0661 at 749.712 kb on - strand, within Psyr_0661 at 749.712 kb on - strand, within Psyr_0661 at 749.712 kb on - strand, within Psyr_0661 at 750.077 kb on + strand, within Psyr_0661 at 750.095 kb on + strand, within Psyr_0661 at 750.095 kb on + strand, within Psyr_0661 at 750.118 kb on + strand, within Psyr_0661 at 750.118 kb on + strand, within Psyr_0661 at 750.118 kb on + strand, within Psyr_0661 at 750.118 kb on + strand, within Psyr_0661 at 750.119 kb on - strand, within Psyr_0661 at 750.119 kb on - strand, within Psyr_0661 at 750.119 kb on - strand, within Psyr_0661 at 750.119 kb on - strand, within Psyr_0661 at 750.134 kb on + strand, within Psyr_0661 at 750.137 kb on + strand, within Psyr_0661 at 750.137 kb on + strand, within Psyr_0661 at 750.137 kb on + strand, within Psyr_0661 at 750.138 kb on - strand, within Psyr_0661 at 750.138 kb on - strand, within Psyr_0661 at 750.138 kb on - strand, within Psyr_0661 at 750.173 kb on + strand, within Psyr_0661 at 750.173 kb on + strand, within Psyr_0661 at 750.173 kb on + strand, within Psyr_0661 at 750.173 kb on + strand, within Psyr_0661 at 750.173 kb on + strand, within Psyr_0661 at 750.173 kb on + strand, within Psyr_0661 at 750.174 kb on - strand, within Psyr_0661 at 750.314 kb on + strand at 750.314 kb on + strand at 750.314 kb on + strand at 750.314 kb on + strand at 750.314 kb on + strand at 750.314 kb on + strand at 750.314 kb on + strand at 750.314 kb on + strand at 750.314 kb on + strand at 750.315 kb on - strand at 750.315 kb on - strand at 750.315 kb on - strand at 750.315 kb on - strand at 750.315 kb on - strand at 750.315 kb on - strand at 750.315 kb on - strand at 750.315 kb on - strand at 750.315 kb on - strand at 750.318 kb on + strand at 750.318 kb on + strand at 750.318 kb on + strand at 750.318 kb on + strand at 750.318 kb on + strand at 750.318 kb on + strand at 750.318 kb on + strand at 750.319 kb on - strand at 750.319 kb on - strand at 750.319 kb on - strand at 750.319 kb on - strand at 750.354 kb on + strand at 750.354 kb on + strand at 750.354 kb on + strand at 750.354 kb on + strand at 750.355 kb on - strand at 750.355 kb on - strand at 750.428 kb on + strand at 750.428 kb on + strand at 750.428 kb on + strand at 750.428 kb on + strand at 750.429 kb on - strand at 750.429 kb on - strand at 750.429 kb on - strand at 750.429 kb on - strand at 750.429 kb on - strand at 750.433 kb on - strand at 750.433 kb on - strand at 750.740 kb on + strand, within Psyr_0662 at 750.839 kb on - strand, within Psyr_0662 at 750.839 kb on - strand, within Psyr_0662 at 750.944 kb on + strand, within Psyr_0662 at 750.944 kb on + strand, within Psyr_0662 at 750.945 kb on - strand, within Psyr_0662 at 750.945 kb on - strand, within Psyr_0662 at 751.250 kb on + strand, within Psyr_0662 at 751.250 kb on + strand, within Psyr_0662 at 751.250 kb on + strand, within Psyr_0662 at 751.250 kb on + strand, within Psyr_0662 at 751.251 kb on - strand, within Psyr_0662 at 751.251 kb on - strand, within Psyr_0662 at 751.251 kb on - strand, within Psyr_0662 at 751.251 kb on - strand, within Psyr_0662 at 751.251 kb on - strand, within Psyr_0662 at 751.251 kb on - strand, within Psyr_0662 at 751.325 kb on + strand at 751.441 kb on + strand at 751.441 kb on + strand at 751.441 kb on + strand at 751.442 kb on - strand at 751.442 kb on - strand at 751.442 kb on - strand at 751.442 kb on - strand at 751.474 kb on + strand at 751.474 kb on + strand at 751.474 kb on + strand at 751.474 kb on + strand at 751.474 kb on + strand at 751.474 kb on + strand at 751.474 kb on + strand at 751.475 kb on - strand at 751.475 kb on - strand at 751.475 kb on - strand at 751.475 kb on - strand at 751.475 kb on - strand at 751.475 kb on - strand at 751.475 kb on - strand at 751.477 kb on + strand at 751.477 kb on + strand at 751.477 kb on + strand at 751.477 kb on + strand at 751.478 kb on - strand at 751.478 kb on - strand at 751.478 kb on - strand at 751.478 kb on - strand at 751.478 kb on - strand at 751.478 kb on - strand at 751.478 kb on - strand at 751.478 kb on - strand at 751.478 kb on - strand at 751.478 kb on - strand at 751.599 kb on + strand, within Psyr_0663 at 751.735 kb on + strand, within Psyr_0663 at 751.735 kb on + strand, within Psyr_0663 at 751.735 kb on + strand, within Psyr_0663 at 751.735 kb on + strand, within Psyr_0663 at 751.736 kb on - strand, within Psyr_0663 at 751.736 kb on - strand, within Psyr_0663 at 751.736 kb on - strand, within Psyr_0663 at 751.820 kb on - strand, within Psyr_0663 at 751.820 kb on - strand, within Psyr_0663 at 751.859 kb on + strand, within Psyr_0663 at 751.876 kb on - strand, within Psyr_0663 at 751.981 kb on + strand, within Psyr_0663 at 751.981 kb on + strand, within Psyr_0663 at 751.981 kb on + strand, within Psyr_0663 at 751.981 kb on + strand, within Psyr_0663 at 751.982 kb on - strand, within Psyr_0663 at 751.982 kb on - strand, within Psyr_0663 at 751.982 kb on - strand, within Psyr_0663 at 751.982 kb on - strand, within Psyr_0663 at 751.982 kb on - strand, within Psyr_0663 at 751.982 kb on - strand, within Psyr_0663 at 752.023 kb on - strand, within Psyr_0663 at 752.051 kb on - strand, within Psyr_0663 at 752.051 kb on - strand, within Psyr_0663 at 752.089 kb on + strand, within Psyr_0663 at 752.089 kb on + strand, within Psyr_0663 at 752.089 kb on + strand, within Psyr_0663 at 752.089 kb on + strand, within Psyr_0663 at 752.089 kb on + strand, within Psyr_0663 at 752.090 kb on - strand, within Psyr_0663 at 752.102 kb on - strand, within Psyr_0663 at 752.102 kb on - strand, within Psyr_0663 at 752.113 kb on + strand, within Psyr_0663 at 752.113 kb on + strand, within Psyr_0663 at 752.113 kb on + strand, within Psyr_0663 at 752.113 kb on + strand, within Psyr_0663 at 752.113 kb on + strand, within Psyr_0663 at 752.113 kb on + strand, within Psyr_0663 at 752.113 kb on + strand, within Psyr_0663 at 752.113 kb on + strand, within Psyr_0663 at 752.113 kb on + strand, within Psyr_0663 at 752.114 kb on - strand, within Psyr_0663 at 752.114 kb on - strand, within Psyr_0663 at 752.114 kb on - strand, within Psyr_0663 at 752.114 kb on - strand, within Psyr_0663 at 752.114 kb on - strand, within Psyr_0663 at 752.114 kb on - strand, within Psyr_0663 at 752.128 kb on + strand, within Psyr_0663 at 752.128 kb on + strand, within Psyr_0663 at 752.128 kb on + strand, within Psyr_0663 at 752.129 kb on - strand, within Psyr_0663 at 752.129 kb on - strand, within Psyr_0663 at 752.129 kb on - strand, within Psyr_0663 at 752.155 kb on + strand, within Psyr_0663 at 752.252 kb on - strand, within Psyr_0663 at 752.317 kb on + strand, within Psyr_0663 at 752.317 kb on + strand, within Psyr_0663 at 752.318 kb on - strand, within Psyr_0663 at 752.318 kb on - strand, within Psyr_0663 at 752.318 kb on - strand, within Psyr_0663 at 752.318 kb on - strand, within Psyr_0663 at 752.318 kb on - strand, within Psyr_0663 at 752.318 kb on - strand, within Psyr_0663 at 752.318 kb on - strand, within Psyr_0663 at 752.318 kb on - strand, within Psyr_0663
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Isosafrole 10 mM remove 749,444 + -0.4 749,444 + +0.5 749,444 + +0.6 749,445 - -1.5 749,445 - -0.5 749,445 - -1.0 749,445 - -0.1 749,472 - Psyr_0661 0.11 -0.9 749,711 + Psyr_0661 0.36 -0.1 749,711 + Psyr_0661 0.36 -2.9 749,712 - Psyr_0661 0.36 +0.6 749,712 - Psyr_0661 0.36 +0.1 749,712 - Psyr_0661 0.36 -0.0 750,077 + Psyr_0661 0.75 -0.0 750,095 + Psyr_0661 0.77 -0.4 750,095 + Psyr_0661 0.77 -0.7 750,118 + Psyr_0661 0.79 -0.3 750,118 + Psyr_0661 0.79 -1.7 750,118 + Psyr_0661 0.79 +1.3 750,118 + Psyr_0661 0.79 +0.7 750,119 - Psyr_0661 0.79 -2.1 750,119 - Psyr_0661 0.79 +0.6 750,119 - Psyr_0661 0.79 -0.7 750,119 - Psyr_0661 0.79 -1.2 750,134 + Psyr_0661 0.81 +1.2 750,137 + Psyr_0661 0.81 -1.7 750,137 + Psyr_0661 0.81 +0.5 750,137 + Psyr_0661 0.81 +0.2 750,138 - Psyr_0661 0.81 -0.0 750,138 - Psyr_0661 0.81 -0.5 750,138 - Psyr_0661 0.81 -0.0 750,173 + Psyr_0661 0.85 +1.3 750,173 + Psyr_0661 0.85 -1.5 750,173 + Psyr_0661 0.85 -0.4 750,173 + Psyr_0661 0.85 -0.9 750,173 + Psyr_0661 0.85 -1.6 750,173 + Psyr_0661 0.85 -1.7 750,174 - Psyr_0661 0.85 +0.9 750,314 + -1.8 750,314 + +1.3 750,314 + -0.3 750,314 + -0.7 750,314 + -0.3 750,314 + +0.1 750,314 + -0.2 750,314 + -0.3 750,314 + -0.3 750,315 - -1.3 750,315 - -0.6 750,315 - +0.7 750,315 - -0.0 750,315 - +0.8 750,315 - +0.7 750,315 - +0.2 750,315 - -0.4 750,315 - +0.5 750,318 + +0.5 750,318 + +1.0 750,318 + -0.8 750,318 + -0.1 750,318 + -0.9 750,318 + -0.6 750,318 + -0.6 750,319 - -0.1 750,319 - -0.0 750,319 - -0.1 750,319 - +0.6 750,354 + -0.3 750,354 + -0.2 750,354 + -0.2 750,354 + +1.7 750,355 - -0.4 750,355 - -0.8 750,428 + -1.7 750,428 + +0.2 750,428 + +0.6 750,428 + -0.2 750,429 - +0.1 750,429 - +0.5 750,429 - -0.5 750,429 - +0.4 750,429 - +1.2 750,433 - +0.3 750,433 - +0.5 750,740 + Psyr_0662 0.36 -1.0 750,839 - Psyr_0662 0.46 +0.9 750,839 - Psyr_0662 0.46 +1.2 750,944 + Psyr_0662 0.57 -0.1 750,944 + Psyr_0662 0.57 +0.2 750,945 - Psyr_0662 0.57 -0.3 750,945 - Psyr_0662 0.57 +0.3 751,250 + Psyr_0662 0.88 +1.2 751,250 + Psyr_0662 0.88 +0.4 751,250 + Psyr_0662 0.88 +0.3 751,250 + Psyr_0662 0.88 +0.4 751,251 - Psyr_0662 0.88 -0.0 751,251 - Psyr_0662 0.88 -0.4 751,251 - Psyr_0662 0.88 +0.4 751,251 - Psyr_0662 0.88 -0.4 751,251 - Psyr_0662 0.88 +0.8 751,251 - Psyr_0662 0.88 -0.1 751,325 + +0.3 751,441 + +1.1 751,441 + +0.5 751,441 + -0.1 751,442 - +0.5 751,442 - +1.3 751,442 - +0.0 751,442 - -1.3 751,474 + -0.0 751,474 + +0.5 751,474 + +0.1 751,474 + +0.2 751,474 + +0.2 751,474 + +0.5 751,474 + +0.5 751,475 - -0.9 751,475 - +0.1 751,475 - +0.9 751,475 - +0.5 751,475 - -0.6 751,475 - -0.6 751,475 - -1.1 751,477 + +1.1 751,477 + -0.1 751,477 + +0.2 751,477 + +0.6 751,478 - +0.3 751,478 - -0.1 751,478 - -1.3 751,478 - +0.7 751,478 - -0.0 751,478 - +0.5 751,478 - +1.0 751,478 - -0.8 751,478 - -0.5 751,478 - +0.8 751,599 + Psyr_0663 0.15 -0.5 751,735 + Psyr_0663 0.27 -0.3 751,735 + Psyr_0663 0.27 -0.6 751,735 + Psyr_0663 0.27 -1.0 751,735 + Psyr_0663 0.27 +0.1 751,736 - Psyr_0663 0.27 +1.7 751,736 - Psyr_0663 0.27 -0.7 751,736 - Psyr_0663 0.27 -0.9 751,820 - Psyr_0663 0.35 -0.3 751,820 - Psyr_0663 0.35 -0.8 751,859 + Psyr_0663 0.38 -0.9 751,876 - Psyr_0663 0.40 +0.3 751,981 + Psyr_0663 0.49 -1.0 751,981 + Psyr_0663 0.49 +0.1 751,981 + Psyr_0663 0.49 -0.6 751,981 + Psyr_0663 0.49 +1.5 751,982 - Psyr_0663 0.49 -0.8 751,982 - Psyr_0663 0.49 -0.6 751,982 - Psyr_0663 0.49 -0.7 751,982 - Psyr_0663 0.49 +0.1 751,982 - Psyr_0663 0.49 +0.8 751,982 - Psyr_0663 0.49 -0.5 752,023 - Psyr_0663 0.53 -0.3 752,051 - Psyr_0663 0.56 +1.1 752,051 - Psyr_0663 0.56 -1.0 752,089 + Psyr_0663 0.59 -0.2 752,089 + Psyr_0663 0.59 -1.0 752,089 + Psyr_0663 0.59 +1.0 752,089 + Psyr_0663 0.59 -0.6 752,089 + Psyr_0663 0.59 +0.8 752,090 - Psyr_0663 0.59 -0.0 752,102 - Psyr_0663 0.60 +0.5 752,102 - Psyr_0663 0.60 +0.3 752,113 + Psyr_0663 0.61 -0.5 752,113 + Psyr_0663 0.61 +1.3 752,113 + Psyr_0663 0.61 +0.0 752,113 + Psyr_0663 0.61 -0.2 752,113 + Psyr_0663 0.61 -0.6 752,113 + Psyr_0663 0.61 -0.4 752,113 + Psyr_0663 0.61 +0.7 752,113 + Psyr_0663 0.61 +0.3 752,113 + Psyr_0663 0.61 -1.0 752,114 - Psyr_0663 0.62 +0.3 752,114 - Psyr_0663 0.62 +0.4 752,114 - Psyr_0663 0.62 +1.1 752,114 - Psyr_0663 0.62 +1.2 752,114 - Psyr_0663 0.62 -0.3 752,114 - Psyr_0663 0.62 -0.1 752,128 + Psyr_0663 0.63 +0.3 752,128 + Psyr_0663 0.63 -0.7 752,128 + Psyr_0663 0.63 +0.1 752,129 - Psyr_0663 0.63 -0.9 752,129 - Psyr_0663 0.63 -0.0 752,129 - Psyr_0663 0.63 +0.8 752,155 + Psyr_0663 0.65 +0.7 752,252 - Psyr_0663 0.74 -0.5 752,317 + Psyr_0663 0.80 +1.3 752,317 + Psyr_0663 0.80 -0.5 752,318 - Psyr_0663 0.80 +0.3 752,318 - Psyr_0663 0.80 -0.6 752,318 - Psyr_0663 0.80 -0.1 752,318 - Psyr_0663 0.80 +0.7 752,318 - Psyr_0663 0.80 -1.8 752,318 - Psyr_0663 0.80 -0.5 752,318 - Psyr_0663 0.80 -1.6 752,318 - Psyr_0663 0.80 +0.1
Or see this region's nucleotide sequence