Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0420

Experiment: KB with Isosafrole 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0419 and Psyr_0420 are separated by 77 nucleotidesPsyr_0420 and Psyr_0421 are separated by 115 nucleotides Psyr_0419: Psyr_0419 - conserved hypothetical protein, at 457,693 to 458,958 _0419 Psyr_0420: Psyr_0420 - General substrate transporter:Major facilitator superfamily, at 459,036 to 460,304 _0420 Psyr_0421: Psyr_0421 - transcriptional regulator, LysR family, at 460,420 to 461,310 _0421 Position (kb) 459 460 461Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 458.122 kb on + strand, within Psyr_0419at 458.122 kb on + strand, within Psyr_0419at 458.122 kb on + strand, within Psyr_0419at 458.122 kb on + strand, within Psyr_0419at 458.122 kb on + strand, within Psyr_0419at 458.123 kb on - strand, within Psyr_0419at 458.123 kb on - strand, within Psyr_0419at 458.123 kb on - strand, within Psyr_0419at 458.150 kb on - strand, within Psyr_0419at 458.161 kb on - strand, within Psyr_0419at 458.276 kb on + strand, within Psyr_0419at 458.276 kb on + strand, within Psyr_0419at 458.277 kb on - strand, within Psyr_0419at 458.281 kb on + strand, within Psyr_0419at 458.281 kb on + strand, within Psyr_0419at 458.281 kb on + strand, within Psyr_0419at 458.281 kb on + strand, within Psyr_0419at 458.282 kb on - strand, within Psyr_0419at 458.282 kb on - strand, within Psyr_0419at 458.282 kb on - strand, within Psyr_0419at 458.282 kb on - strand, within Psyr_0419at 458.282 kb on - strand, within Psyr_0419at 458.282 kb on - strand, within Psyr_0419at 458.282 kb on - strand, within Psyr_0419at 458.456 kb on + strand, within Psyr_0419at 458.456 kb on + strand, within Psyr_0419at 458.456 kb on + strand, within Psyr_0419at 458.456 kb on + strand, within Psyr_0419at 458.456 kb on + strand, within Psyr_0419at 458.456 kb on + strand, within Psyr_0419at 458.456 kb on + strand, within Psyr_0419at 458.456 kb on + strand, within Psyr_0419at 458.456 kb on + strand, within Psyr_0419at 458.457 kb on - strand, within Psyr_0419at 458.457 kb on - strand, within Psyr_0419at 458.503 kb on + strand, within Psyr_0419at 458.538 kb on - strand, within Psyr_0419at 458.538 kb on - strand, within Psyr_0419at 458.549 kb on - strand, within Psyr_0419at 458.549 kb on - strand, within Psyr_0419at 458.602 kb on + strand, within Psyr_0419at 458.602 kb on + strand, within Psyr_0419at 458.656 kb on + strand, within Psyr_0419at 458.656 kb on + strand, within Psyr_0419at 458.656 kb on + strand, within Psyr_0419at 458.657 kb on - strand, within Psyr_0419at 458.711 kb on + strand, within Psyr_0419at 458.747 kb on - strand, within Psyr_0419at 458.809 kb on + strand, within Psyr_0419at 458.809 kb on + strand, within Psyr_0419at 458.810 kb on - strand, within Psyr_0419at 458.810 kb on - strand, within Psyr_0419at 458.919 kb on - strandat 458.997 kb on + strandat 458.997 kb on + strandat 458.997 kb on + strandat 458.997 kb on + strandat 458.997 kb on + strandat 458.998 kb on - strandat 458.998 kb on - strandat 458.998 kb on - strandat 458.998 kb on - strandat 459.027 kb on + strandat 459.027 kb on + strandat 459.027 kb on + strandat 459.028 kb on - strandat 459.028 kb on - strandat 459.028 kb on - strandat 459.028 kb on - strandat 459.111 kb on + strandat 459.111 kb on + strandat 459.111 kb on + strandat 459.112 kb on - strandat 459.112 kb on - strandat 459.143 kb on - strandat 459.191 kb on - strand, within Psyr_0420at 459.193 kb on + strand, within Psyr_0420at 459.194 kb on - strand, within Psyr_0420at 459.194 kb on - strand, within Psyr_0420at 459.205 kb on + strand, within Psyr_0420at 459.205 kb on + strand, within Psyr_0420at 459.205 kb on + strand, within Psyr_0420at 459.206 kb on - strand, within Psyr_0420at 459.206 kb on - strand, within Psyr_0420at 459.399 kb on + strand, within Psyr_0420at 459.400 kb on - strand, within Psyr_0420at 459.436 kb on + strand, within Psyr_0420at 459.436 kb on + strand, within Psyr_0420at 459.436 kb on + strand, within Psyr_0420at 459.436 kb on + strand, within Psyr_0420at 459.436 kb on + strand, within Psyr_0420at 459.436 kb on + strand, within Psyr_0420at 459.436 kb on + strand, within Psyr_0420at 459.436 kb on + strand, within Psyr_0420at 459.437 kb on - strand, within Psyr_0420at 459.437 kb on - strand, within Psyr_0420at 459.437 kb on - strand, within Psyr_0420at 459.437 kb on - strand, within Psyr_0420at 459.451 kb on + strand, within Psyr_0420at 459.451 kb on + strand, within Psyr_0420at 459.451 kb on + strand, within Psyr_0420at 459.452 kb on - strand, within Psyr_0420at 459.452 kb on - strand, within Psyr_0420at 459.493 kb on + strand, within Psyr_0420at 459.494 kb on - strand, within Psyr_0420at 459.523 kb on + strand, within Psyr_0420at 459.524 kb on - strand, within Psyr_0420at 459.524 kb on - strand, within Psyr_0420at 459.524 kb on - strand, within Psyr_0420at 459.524 kb on - strand, within Psyr_0420at 459.524 kb on - strand, within Psyr_0420at 459.524 kb on - strand, within Psyr_0420at 459.524 kb on - strand, within Psyr_0420at 459.745 kb on + strand, within Psyr_0420at 459.745 kb on + strand, within Psyr_0420at 459.746 kb on - strand, within Psyr_0420at 459.746 kb on - strand, within Psyr_0420at 459.746 kb on - strand, within Psyr_0420at 459.746 kb on - strand, within Psyr_0420at 459.746 kb on - strand, within Psyr_0420at 459.746 kb on - strand, within Psyr_0420at 459.746 kb on - strand, within Psyr_0420at 459.808 kb on + strand, within Psyr_0420at 459.808 kb on + strand, within Psyr_0420at 459.808 kb on + strand, within Psyr_0420at 459.808 kb on + strand, within Psyr_0420at 459.808 kb on + strand, within Psyr_0420at 459.808 kb on + strand, within Psyr_0420at 459.808 kb on + strand, within Psyr_0420at 459.808 kb on + strand, within Psyr_0420at 459.808 kb on + strand, within Psyr_0420at 459.809 kb on - strand, within Psyr_0420at 459.809 kb on - strand, within Psyr_0420at 459.809 kb on - strand, within Psyr_0420at 459.809 kb on - strand, within Psyr_0420at 459.809 kb on - strand, within Psyr_0420at 459.809 kb on - strand, within Psyr_0420at 459.809 kb on - strand, within Psyr_0420at 459.809 kb on - strand, within Psyr_0420at 459.809 kb on - strand, within Psyr_0420at 459.809 kb on - strand, within Psyr_0420at 459.809 kb on - strand, within Psyr_0420at 459.859 kb on + strand, within Psyr_0420at 459.859 kb on + strand, within Psyr_0420at 459.860 kb on - strand, within Psyr_0420at 459.860 kb on - strand, within Psyr_0420at 459.900 kb on + strand, within Psyr_0420at 459.900 kb on + strand, within Psyr_0420at 459.901 kb on - strand, within Psyr_0420at 459.901 kb on - strand, within Psyr_0420at 459.901 kb on - strand, within Psyr_0420at 459.901 kb on - strand, within Psyr_0420at 459.901 kb on - strand, within Psyr_0420at 459.901 kb on - strand, within Psyr_0420at 459.901 kb on - strand, within Psyr_0420at 460.144 kb on + strand, within Psyr_0420at 460.144 kb on + strand, within Psyr_0420at 460.144 kb on + strand, within Psyr_0420at 460.144 kb on + strand, within Psyr_0420at 460.145 kb on - strand, within Psyr_0420at 460.145 kb on - strand, within Psyr_0420at 460.145 kb on - strand, within Psyr_0420at 460.154 kb on + strand, within Psyr_0420at 460.154 kb on + strand, within Psyr_0420at 460.225 kb on + strandat 460.225 kb on + strandat 460.225 kb on + strandat 460.225 kb on + strandat 460.225 kb on + strandat 460.225 kb on + strandat 460.225 kb on + strandat 460.225 kb on + strandat 460.225 kb on + strandat 460.225 kb on + strandat 460.225 kb on + strandat 460.225 kb on + strandat 460.225 kb on + strandat 460.225 kb on + strandat 460.226 kb on - strandat 460.226 kb on - strandat 460.226 kb on - strandat 460.226 kb on - strandat 460.226 kb on - strandat 460.226 kb on - strandat 460.226 kb on - strandat 460.226 kb on - strandat 460.226 kb on - strandat 460.226 kb on - strandat 460.255 kb on - strandat 460.346 kb on + strandat 460.346 kb on + strandat 460.346 kb on + strandat 460.348 kb on + strandat 460.348 kb on + strandat 460.348 kb on + strandat 460.348 kb on + strandat 460.348 kb on + strandat 460.348 kb on + strandat 460.348 kb on + strandat 460.348 kb on + strandat 460.348 kb on + strandat 460.348 kb on + strandat 460.348 kb on + strandat 460.348 kb on + strandat 460.348 kb on + strandat 460.348 kb on + strandat 460.348 kb on + strandat 460.348 kb on + strandat 460.349 kb on - strandat 460.349 kb on - strandat 460.349 kb on - strandat 460.349 kb on - strandat 460.349 kb on - strandat 460.349 kb on - strandat 460.349 kb on - strandat 460.349 kb on - strandat 460.349 kb on - strandat 460.349 kb on - strandat 460.349 kb on - strandat 460.349 kb on - strandat 460.349 kb on - strandat 460.349 kb on - strandat 460.372 kb on + strandat 460.374 kb on + strandat 460.397 kb on + strandat 460.398 kb on - strandat 460.441 kb on + strandat 460.442 kb on - strandat 460.728 kb on + strand, within Psyr_0421at 460.972 kb on + strand, within Psyr_0421at 460.972 kb on + strand, within Psyr_0421at 460.972 kb on + strand, within Psyr_0421at 460.972 kb on + strand, within Psyr_0421at 460.972 kb on + strand, within Psyr_0421at 460.972 kb on + strand, within Psyr_0421at 460.972 kb on + strand, within Psyr_0421at 460.972 kb on + strand, within Psyr_0421at 460.973 kb on - strand, within Psyr_0421at 460.973 kb on - strand, within Psyr_0421at 460.973 kb on - strand, within Psyr_0421at 460.973 kb on - strand, within Psyr_0421at 460.973 kb on - strand, within Psyr_0421at 460.973 kb on - strand, within Psyr_0421at 460.973 kb on - strand, within Psyr_0421at 460.973 kb on - strand, within Psyr_0421at 460.973 kb on - strand, within Psyr_0421at 460.973 kb on - strand, within Psyr_0421at 460.973 kb on - strand, within Psyr_0421at 460.973 kb on - strand, within Psyr_0421at 460.973 kb on - strand, within Psyr_0421at 461.020 kb on + strand, within Psyr_0421at 461.020 kb on + strand, within Psyr_0421at 461.021 kb on - strand, within Psyr_0421at 461.021 kb on - strand, within Psyr_0421at 461.031 kb on + strand, within Psyr_0421at 461.032 kb on - strand, within Psyr_0421at 461.035 kb on + strand, within Psyr_0421at 461.035 kb on + strand, within Psyr_0421at 461.035 kb on + strand, within Psyr_0421at 461.036 kb on - strand, within Psyr_0421at 461.303 kb on + strandat 461.303 kb on + strandat 461.303 kb on + strandat 461.304 kb on - strandat 461.304 kb on - strandat 461.304 kb on - strandat 461.304 kb on - strandat 461.304 kb on - strandat 461.304 kb on - strandat 461.304 kb on - strandat 461.304 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Isosafrole 10 mM
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458,122 + Psyr_0419 0.34 -0.1
458,122 + Psyr_0419 0.34 +0.6
458,122 + Psyr_0419 0.34 +0.1
458,122 + Psyr_0419 0.34 +0.1
458,122 + Psyr_0419 0.34 -0.3
458,123 - Psyr_0419 0.34 +0.9
458,123 - Psyr_0419 0.34 +0.4
458,123 - Psyr_0419 0.34 +0.6
458,150 - Psyr_0419 0.36 +0.3
458,161 - Psyr_0419 0.37 -0.1
458,276 + Psyr_0419 0.46 -0.5
458,276 + Psyr_0419 0.46 +0.1
458,277 - Psyr_0419 0.46 -0.4
458,281 + Psyr_0419 0.46 -0.9
458,281 + Psyr_0419 0.46 -0.4
458,281 + Psyr_0419 0.46 -0.4
458,281 + Psyr_0419 0.46 +1.4
458,282 - Psyr_0419 0.47 -0.4
458,282 - Psyr_0419 0.47 -1.7
458,282 - Psyr_0419 0.47 +1.0
458,282 - Psyr_0419 0.47 -0.3
458,282 - Psyr_0419 0.47 -0.2
458,282 - Psyr_0419 0.47 +0.4
458,282 - Psyr_0419 0.47 +0.0
458,456 + Psyr_0419 0.60 +0.0
458,456 + Psyr_0419 0.60 +0.7
458,456 + Psyr_0419 0.60 -0.4
458,456 + Psyr_0419 0.60 -1.7
458,456 + Psyr_0419 0.60 -1.1
458,456 + Psyr_0419 0.60 -0.7
458,456 + Psyr_0419 0.60 +0.4
458,456 + Psyr_0419 0.60 +0.0
458,456 + Psyr_0419 0.60 -2.2
458,457 - Psyr_0419 0.60 -2.1
458,457 - Psyr_0419 0.60 -0.5
458,503 + Psyr_0419 0.64 +0.4
458,538 - Psyr_0419 0.67 +0.4
458,538 - Psyr_0419 0.67 +0.9
458,549 - Psyr_0419 0.68 -0.6
458,549 - Psyr_0419 0.68 -0.9
458,602 + Psyr_0419 0.72 -1.1
458,602 + Psyr_0419 0.72 +0.3
458,656 + Psyr_0419 0.76 -0.9
458,656 + Psyr_0419 0.76 -0.3
458,656 + Psyr_0419 0.76 -0.2
458,657 - Psyr_0419 0.76 +0.1
458,711 + Psyr_0419 0.80 -0.6
458,747 - Psyr_0419 0.83 -0.7
458,809 + Psyr_0419 0.88 +0.2
458,809 + Psyr_0419 0.88 -0.9
458,810 - Psyr_0419 0.88 -0.8
458,810 - Psyr_0419 0.88 +0.7
458,919 - +0.6
458,997 + +0.2
458,997 + -0.0
458,997 + +1.3
458,997 + +0.0
458,997 + +0.9
458,998 - +0.1
458,998 - +0.8
458,998 - +0.5
458,998 - +2.0
459,027 + +0.3
459,027 + -0.5
459,027 + -0.9
459,028 - -0.4
459,028 - +0.5
459,028 - -0.8
459,028 - -2.8
459,111 + -1.0
459,111 + +0.5
459,111 + +0.5
459,112 - -0.5
459,112 - -0.2
459,143 - -0.5
459,191 - Psyr_0420 0.12 -0.1
459,193 + Psyr_0420 0.12 +0.5
459,194 - Psyr_0420 0.12 +0.7
459,194 - Psyr_0420 0.12 -1.1
459,205 + Psyr_0420 0.13 +0.1
459,205 + Psyr_0420 0.13 -0.3
459,205 + Psyr_0420 0.13 -0.1
459,206 - Psyr_0420 0.13 -0.8
459,206 - Psyr_0420 0.13 +1.0
459,399 + Psyr_0420 0.29 +0.7
459,400 - Psyr_0420 0.29 -0.5
459,436 + Psyr_0420 0.32 -0.1
459,436 + Psyr_0420 0.32 -0.3
459,436 + Psyr_0420 0.32 +0.7
459,436 + Psyr_0420 0.32 -0.5
459,436 + Psyr_0420 0.32 -0.5
459,436 + Psyr_0420 0.32 +0.1
459,436 + Psyr_0420 0.32 +1.1
459,436 + Psyr_0420 0.32 -0.8
459,437 - Psyr_0420 0.32 +0.3
459,437 - Psyr_0420 0.32 +2.5
459,437 - Psyr_0420 0.32 -0.1
459,437 - Psyr_0420 0.32 -0.7
459,451 + Psyr_0420 0.33 -1.4
459,451 + Psyr_0420 0.33 -0.5
459,451 + Psyr_0420 0.33 +0.6
459,452 - Psyr_0420 0.33 -0.9
459,452 - Psyr_0420 0.33 +0.3
459,493 + Psyr_0420 0.36 +0.3
459,494 - Psyr_0420 0.36 -1.9
459,523 + Psyr_0420 0.38 +0.5
459,524 - Psyr_0420 0.38 +0.6
459,524 - Psyr_0420 0.38 +0.5
459,524 - Psyr_0420 0.38 +0.9
459,524 - Psyr_0420 0.38 -0.1
459,524 - Psyr_0420 0.38 -0.4
459,524 - Psyr_0420 0.38 -0.2
459,524 - Psyr_0420 0.38 -0.7
459,745 + Psyr_0420 0.56 +1.2
459,745 + Psyr_0420 0.56 -0.3
459,746 - Psyr_0420 0.56 -0.7
459,746 - Psyr_0420 0.56 -0.4
459,746 - Psyr_0420 0.56 -1.1
459,746 - Psyr_0420 0.56 -1.3
459,746 - Psyr_0420 0.56 -1.5
459,746 - Psyr_0420 0.56 +0.3
459,746 - Psyr_0420 0.56 +0.0
459,808 + Psyr_0420 0.61 -0.4
459,808 + Psyr_0420 0.61 +0.7
459,808 + Psyr_0420 0.61 +0.2
459,808 + Psyr_0420 0.61 +0.3
459,808 + Psyr_0420 0.61 -1.5
459,808 + Psyr_0420 0.61 -1.5
459,808 + Psyr_0420 0.61 -0.2
459,808 + Psyr_0420 0.61 -1.9
459,808 + Psyr_0420 0.61 -0.6
459,809 - Psyr_0420 0.61 +1.2
459,809 - Psyr_0420 0.61 -1.3
459,809 - Psyr_0420 0.61 -1.1
459,809 - Psyr_0420 0.61 -0.1
459,809 - Psyr_0420 0.61 +0.6
459,809 - Psyr_0420 0.61 +0.2
459,809 - Psyr_0420 0.61 -0.5
459,809 - Psyr_0420 0.61 -0.3
459,809 - Psyr_0420 0.61 -0.8
459,809 - Psyr_0420 0.61 +1.0
459,809 - Psyr_0420 0.61 +0.5
459,859 + Psyr_0420 0.65 -0.7
459,859 + Psyr_0420 0.65 +0.9
459,860 - Psyr_0420 0.65 -0.5
459,860 - Psyr_0420 0.65 +0.0
459,900 + Psyr_0420 0.68 -0.9
459,900 + Psyr_0420 0.68 -0.3
459,901 - Psyr_0420 0.68 +0.6
459,901 - Psyr_0420 0.68 +0.6
459,901 - Psyr_0420 0.68 -0.7
459,901 - Psyr_0420 0.68 -1.3
459,901 - Psyr_0420 0.68 -0.1
459,901 - Psyr_0420 0.68 +0.3
459,901 - Psyr_0420 0.68 +0.5
460,144 + Psyr_0420 0.87 -0.4
460,144 + Psyr_0420 0.87 +0.2
460,144 + Psyr_0420 0.87 -1.7
460,144 + Psyr_0420 0.87 -1.0
460,145 - Psyr_0420 0.87 -0.9
460,145 - Psyr_0420 0.87 +0.1
460,145 - Psyr_0420 0.87 +1.0
460,154 + Psyr_0420 0.88 -0.3
460,154 + Psyr_0420 0.88 +0.7
460,225 + -1.9
460,225 + -0.1
460,225 + +0.2
460,225 + -2.9
460,225 + -0.8
460,225 + +0.3
460,225 + +1.0
460,225 + +0.7
460,225 + -0.4
460,225 + -0.0
460,225 + +0.6
460,225 + -0.3
460,225 + -0.4
460,225 + +0.3
460,226 - -0.1
460,226 - +0.5
460,226 - -0.4
460,226 - +0.3
460,226 - +0.5
460,226 - +1.7
460,226 - -0.5
460,226 - -1.5
460,226 - +1.1
460,226 - -0.1
460,255 - -0.2
460,346 + -0.0
460,346 + +0.4
460,346 + +0.5
460,348 + -0.1
460,348 + +0.5
460,348 + +1.2
460,348 + -0.7
460,348 + -0.1
460,348 + +0.4
460,348 + -1.5
460,348 + +0.2
460,348 + -0.9
460,348 + -0.1
460,348 + +2.7
460,348 + +0.0
460,348 + -0.6
460,348 + +0.5
460,348 + +0.7
460,348 + -0.5
460,349 - -0.2
460,349 - +0.3
460,349 - +0.8
460,349 - -1.2
460,349 - +0.1
460,349 - +0.5
460,349 - +0.6
460,349 - -0.5
460,349 - -1.0
460,349 - -1.1
460,349 - +1.0
460,349 - -0.1
460,349 - +0.2
460,349 - -0.4
460,372 + -0.8
460,374 + -2.0
460,397 + -0.6
460,398 - +0.5
460,441 + +0.8
460,442 - +0.7
460,728 + Psyr_0421 0.35 +1.0
460,972 + Psyr_0421 0.62 +1.0
460,972 + Psyr_0421 0.62 -0.1
460,972 + Psyr_0421 0.62 -0.4
460,972 + Psyr_0421 0.62 -0.3
460,972 + Psyr_0421 0.62 +0.2
460,972 + Psyr_0421 0.62 +0.3
460,972 + Psyr_0421 0.62 -1.2
460,972 + Psyr_0421 0.62 +0.1
460,973 - Psyr_0421 0.62 +0.2
460,973 - Psyr_0421 0.62 +0.1
460,973 - Psyr_0421 0.62 +0.1
460,973 - Psyr_0421 0.62 +0.3
460,973 - Psyr_0421 0.62 -1.4
460,973 - Psyr_0421 0.62 +0.3
460,973 - Psyr_0421 0.62 +1.1
460,973 - Psyr_0421 0.62 -0.1
460,973 - Psyr_0421 0.62 +0.9
460,973 - Psyr_0421 0.62 +0.5
460,973 - Psyr_0421 0.62 -1.7
460,973 - Psyr_0421 0.62 +0.0
460,973 - Psyr_0421 0.62 +0.0
461,020 + Psyr_0421 0.67 +0.6
461,020 + Psyr_0421 0.67 -0.9
461,021 - Psyr_0421 0.67 +0.0
461,021 - Psyr_0421 0.67 -0.2
461,031 + Psyr_0421 0.69 -1.5
461,032 - Psyr_0421 0.69 -1.1
461,035 + Psyr_0421 0.69 +0.6
461,035 + Psyr_0421 0.69 -1.9
461,035 + Psyr_0421 0.69 +1.0
461,036 - Psyr_0421 0.69 -0.8
461,303 + -1.1
461,303 + -0.3
461,303 + -0.2
461,304 - -0.5
461,304 - +0.7
461,304 - +0.1
461,304 - -0.1
461,304 - +0.3
461,304 - -0.3
461,304 - -0.3
461,304 - +0.1

Or see this region's nucleotide sequence