Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS08435 and PFLU_RS08440 are separated by 28 nucleotides PFLU_RS08440 and PFLU_RS08445 are separated by 234 nucleotides PFLU_RS08445 and PFLU_RS08450 are separated by 79 nucleotides
PFLU_RS08435: PFLU_RS08435 - alpha/beta hydrolase fold domain-containing protein, at 1,881,526 to 1,882,542
_RS08435
PFLU_RS08440: PFLU_RS08440 - organic hydroperoxide resistance protein, at 1,882,571 to 1,882,990
_RS08440
PFLU_RS08445: PFLU_RS08445 - MarR family transcriptional regulator, at 1,883,225 to 1,883,677
_RS08445
PFLU_RS08450: PFLU_RS08450 - LysR family transcriptional regulator, at 1,883,757 to 1,884,707
_RS08450
Position (kb) 1883
1884 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1882.372 kb on + strand, within PFLU_RS08435 at 1882.373 kb on - strand, within PFLU_RS08435 at 1882.527 kb on + strand at 1882.527 kb on + strand at 1882.527 kb on + strand at 1882.528 kb on - strand at 1882.528 kb on - strand at 1882.572 kb on + strand at 1882.572 kb on + strand at 1882.572 kb on + strand at 1882.572 kb on + strand at 1882.572 kb on + strand at 1882.573 kb on - strand at 1882.573 kb on - strand at 1882.592 kb on + strand at 1882.592 kb on + strand at 1882.592 kb on + strand at 1882.592 kb on + strand at 1882.592 kb on + strand at 1882.592 kb on + strand at 1882.592 kb on + strand at 1882.592 kb on + strand at 1882.592 kb on + strand at 1882.593 kb on - strand at 1882.593 kb on - strand at 1882.593 kb on - strand at 1882.593 kb on - strand at 1882.593 kb on - strand at 1882.593 kb on - strand at 1882.593 kb on - strand at 1882.593 kb on - strand at 1882.593 kb on - strand at 1882.593 kb on - strand at 1882.593 kb on - strand at 1882.593 kb on - strand at 1882.593 kb on - strand at 1882.830 kb on + strand, within PFLU_RS08440 at 1882.977 kb on + strand at 1882.977 kb on + strand at 1882.977 kb on + strand at 1882.977 kb on + strand at 1882.977 kb on + strand at 1882.978 kb on - strand at 1882.990 kb on + strand at 1882.990 kb on + strand at 1882.990 kb on + strand at 1882.991 kb on - strand at 1882.991 kb on - strand at 1882.991 kb on - strand at 1882.991 kb on - strand at 1882.991 kb on - strand at 1883.032 kb on + strand at 1883.033 kb on - strand at 1883.054 kb on + strand at 1883.054 kb on + strand at 1883.054 kb on + strand at 1883.054 kb on + strand at 1883.055 kb on - strand at 1883.055 kb on - strand at 1883.055 kb on - strand at 1883.055 kb on - strand at 1883.055 kb on - strand at 1883.055 kb on - strand at 1883.088 kb on - strand at 1883.095 kb on - strand at 1883.114 kb on + strand at 1883.114 kb on + strand at 1883.114 kb on + strand at 1883.114 kb on + strand at 1883.114 kb on + strand at 1883.114 kb on + strand at 1883.114 kb on + strand at 1883.115 kb on - strand at 1883.115 kb on - strand at 1883.115 kb on - strand at 1883.226 kb on + strand at 1883.226 kb on + strand at 1883.226 kb on + strand at 1883.226 kb on + strand at 1883.227 kb on - strand at 1883.227 kb on - strand at 1883.315 kb on + strand, within PFLU_RS08445 at 1883.315 kb on + strand, within PFLU_RS08445 at 1883.315 kb on + strand, within PFLU_RS08445 at 1883.315 kb on + strand, within PFLU_RS08445 at 1883.315 kb on + strand, within PFLU_RS08445 at 1883.315 kb on + strand, within PFLU_RS08445 at 1883.315 kb on + strand, within PFLU_RS08445 at 1883.315 kb on + strand, within PFLU_RS08445 at 1883.315 kb on + strand, within PFLU_RS08445 at 1883.315 kb on + strand, within PFLU_RS08445 at 1883.315 kb on + strand, within PFLU_RS08445 at 1883.315 kb on + strand, within PFLU_RS08445 at 1883.315 kb on + strand, within PFLU_RS08445 at 1883.315 kb on + strand, within PFLU_RS08445 at 1883.315 kb on + strand, within PFLU_RS08445 at 1883.315 kb on + strand, within PFLU_RS08445 at 1883.315 kb on + strand, within PFLU_RS08445 at 1883.315 kb on + strand, within PFLU_RS08445 at 1883.315 kb on + strand, within PFLU_RS08445 at 1883.315 kb on + strand, within PFLU_RS08445 at 1883.316 kb on - strand, within PFLU_RS08445 at 1883.316 kb on - strand, within PFLU_RS08445 at 1883.316 kb on - strand, within PFLU_RS08445 at 1883.316 kb on - strand, within PFLU_RS08445 at 1883.316 kb on - strand, within PFLU_RS08445 at 1883.316 kb on - strand, within PFLU_RS08445 at 1883.316 kb on - strand, within PFLU_RS08445 at 1883.316 kb on - strand, within PFLU_RS08445 at 1883.316 kb on - strand, within PFLU_RS08445 at 1883.316 kb on - strand, within PFLU_RS08445 at 1883.316 kb on - strand, within PFLU_RS08445 at 1883.316 kb on - strand, within PFLU_RS08445 at 1883.376 kb on - strand, within PFLU_RS08445 at 1883.376 kb on - strand, within PFLU_RS08445 at 1883.541 kb on + strand, within PFLU_RS08445 at 1883.541 kb on + strand, within PFLU_RS08445 at 1883.541 kb on + strand, within PFLU_RS08445 at 1883.542 kb on - strand, within PFLU_RS08445 at 1883.542 kb on - strand, within PFLU_RS08445 at 1883.542 kb on - strand, within PFLU_RS08445 at 1883.542 kb on - strand, within PFLU_RS08445 at 1883.542 kb on - strand, within PFLU_RS08445 at 1883.551 kb on - strand, within PFLU_RS08445 at 1883.583 kb on + strand, within PFLU_RS08445 at 1883.583 kb on + strand, within PFLU_RS08445 at 1883.584 kb on - strand, within PFLU_RS08445 at 1883.584 kb on - strand, within PFLU_RS08445 at 1883.584 kb on - strand, within PFLU_RS08445 at 1883.584 kb on - strand, within PFLU_RS08445 at 1883.683 kb on + strand at 1883.684 kb on - strand at 1883.684 kb on - strand at 1883.684 kb on - strand at 1883.684 kb on - strand at 1883.684 kb on - strand at 1883.684 kb on - strand at 1883.701 kb on + strand at 1883.701 kb on + strand at 1883.701 kb on + strand at 1883.701 kb on + strand at 1883.702 kb on - strand at 1883.702 kb on - strand at 1883.702 kb on - strand at 1883.714 kb on - strand at 1883.740 kb on + strand at 1883.741 kb on - strand at 1883.821 kb on + strand at 1883.821 kb on + strand at 1883.822 kb on - strand at 1883.822 kb on - strand at 1883.822 kb on - strand at 1883.822 kb on - strand at 1883.875 kb on + strand, within PFLU_RS08450 at 1883.875 kb on + strand, within PFLU_RS08450 at 1883.875 kb on + strand, within PFLU_RS08450 at 1883.875 kb on + strand, within PFLU_RS08450 at 1883.875 kb on + strand, within PFLU_RS08450 at 1883.875 kb on + strand, within PFLU_RS08450 at 1883.875 kb on + strand, within PFLU_RS08450 at 1883.875 kb on + strand, within PFLU_RS08450 at 1883.876 kb on - strand, within PFLU_RS08450 at 1883.876 kb on - strand, within PFLU_RS08450 at 1883.876 kb on - strand, within PFLU_RS08450 at 1883.876 kb on - strand, within PFLU_RS08450 at 1883.876 kb on - strand, within PFLU_RS08450 at 1883.876 kb on - strand, within PFLU_RS08450 at 1883.876 kb on - strand, within PFLU_RS08450 at 1883.876 kb on - strand, within PFLU_RS08450 at 1883.876 kb on - strand, within PFLU_RS08450 at 1883.876 kb on - strand, within PFLU_RS08450 at 1883.876 kb on - strand, within PFLU_RS08450 at 1883.947 kb on + strand, within PFLU_RS08450 at 1883.947 kb on + strand, within PFLU_RS08450 at 1883.948 kb on - strand, within PFLU_RS08450 at 1883.948 kb on - strand, within PFLU_RS08450 at 1883.948 kb on - strand, within PFLU_RS08450 at 1883.948 kb on - strand, within PFLU_RS08450 at 1883.948 kb on - strand, within PFLU_RS08450 at 1884.056 kb on - strand, within PFLU_RS08450 at 1884.248 kb on + strand, within PFLU_RS08450 at 1884.249 kb on - strand, within PFLU_RS08450 at 1884.346 kb on + strand, within PFLU_RS08450 at 1884.346 kb on + strand, within PFLU_RS08450 at 1884.346 kb on + strand, within PFLU_RS08450 at 1884.346 kb on + strand, within PFLU_RS08450 at 1884.347 kb on - strand, within PFLU_RS08450 at 1884.347 kb on - strand, within PFLU_RS08450 at 1884.660 kb on + strand at 1884.660 kb on + strand at 1884.660 kb on + strand at 1884.660 kb on + strand at 1884.660 kb on + strand at 1884.660 kb on + strand at 1884.660 kb on + strand at 1884.660 kb on + strand at 1884.660 kb on + strand at 1884.660 kb on + strand at 1884.660 kb on + strand at 1884.660 kb on + strand at 1884.660 kb on + strand at 1884.660 kb on + strand at 1884.660 kb on + strand at 1884.660 kb on + strand at 1884.660 kb on + strand at 1884.660 kb on + strand at 1884.660 kb on + strand at 1884.661 kb on - strand at 1884.661 kb on - strand at 1884.661 kb on - strand at 1884.661 kb on - strand at 1884.661 kb on - strand at 1884.661 kb on - strand at 1884.661 kb on - strand at 1884.661 kb on - strand at 1884.661 kb on - strand at 1884.661 kb on - strand at 1884.661 kb on - strand at 1884.661 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) and Ammonium chloride (N); with TAPS remove 1,882,372 + PFLU_RS08435 0.83 -0.3 1,882,373 - PFLU_RS08435 0.83 +0.4 1,882,527 + +0.1 1,882,527 + +0.6 1,882,527 + +0.4 1,882,528 - -0.4 1,882,528 - +0.1 1,882,572 + +0.1 1,882,572 + +0.2 1,882,572 + +1.1 1,882,572 + -2.0 1,882,572 + +0.2 1,882,573 - +1.3 1,882,573 - -1.5 1,882,592 + -0.1 1,882,592 + -0.9 1,882,592 + -0.4 1,882,592 + -0.1 1,882,592 + -0.6 1,882,592 + -2.8 1,882,592 + +0.4 1,882,592 + +0.7 1,882,592 + -1.2 1,882,593 - -1.2 1,882,593 - +1.2 1,882,593 - +1.5 1,882,593 - +0.3 1,882,593 - +0.6 1,882,593 - +0.2 1,882,593 - +0.2 1,882,593 - -1.1 1,882,593 - +0.1 1,882,593 - +1.0 1,882,593 - +0.5 1,882,593 - -0.5 1,882,593 - +0.7 1,882,830 + PFLU_RS08440 0.62 +0.8 1,882,977 + +0.7 1,882,977 + +0.0 1,882,977 + +1.3 1,882,977 + -0.2 1,882,977 + +0.3 1,882,978 - -0.5 1,882,990 + +0.2 1,882,990 + +0.1 1,882,990 + +0.6 1,882,991 - +0.8 1,882,991 - +0.4 1,882,991 - +0.5 1,882,991 - -2.8 1,882,991 - +1.5 1,883,032 + -0.5 1,883,033 - -1.3 1,883,054 + +1.6 1,883,054 + +2.0 1,883,054 + +1.1 1,883,054 + +1.0 1,883,055 - +1.7 1,883,055 - -0.5 1,883,055 - -2.2 1,883,055 - -0.3 1,883,055 - -0.3 1,883,055 - -1.4 1,883,088 - -2.7 1,883,095 - -0.3 1,883,114 + +0.2 1,883,114 + +0.0 1,883,114 + -0.2 1,883,114 + -1.5 1,883,114 + -0.0 1,883,114 + +0.5 1,883,114 + -2.1 1,883,115 - -0.3 1,883,115 - +0.2 1,883,115 - -0.4 1,883,226 + +0.9 1,883,226 + +0.3 1,883,226 + -0.1 1,883,226 + -1.5 1,883,227 - -0.3 1,883,227 - -0.5 1,883,315 + PFLU_RS08445 0.20 -0.6 1,883,315 + PFLU_RS08445 0.20 -0.9 1,883,315 + PFLU_RS08445 0.20 -0.5 1,883,315 + PFLU_RS08445 0.20 -1.0 1,883,315 + PFLU_RS08445 0.20 -1.3 1,883,315 + PFLU_RS08445 0.20 -1.9 1,883,315 + PFLU_RS08445 0.20 -0.4 1,883,315 + PFLU_RS08445 0.20 -1.3 1,883,315 + PFLU_RS08445 0.20 -1.5 1,883,315 + PFLU_RS08445 0.20 -1.9 1,883,315 + PFLU_RS08445 0.20 -0.1 1,883,315 + PFLU_RS08445 0.20 -1.1 1,883,315 + PFLU_RS08445 0.20 -1.7 1,883,315 + PFLU_RS08445 0.20 -0.1 1,883,315 + PFLU_RS08445 0.20 -2.5 1,883,315 + PFLU_RS08445 0.20 -2.6 1,883,315 + PFLU_RS08445 0.20 -0.6 1,883,315 + PFLU_RS08445 0.20 -2.1 1,883,315 + PFLU_RS08445 0.20 +0.3 1,883,315 + PFLU_RS08445 0.20 -1.7 1,883,316 - PFLU_RS08445 0.20 +2.4 1,883,316 - PFLU_RS08445 0.20 -1.3 1,883,316 - PFLU_RS08445 0.20 -1.2 1,883,316 - PFLU_RS08445 0.20 -1.5 1,883,316 - PFLU_RS08445 0.20 -2.1 1,883,316 - PFLU_RS08445 0.20 -1.8 1,883,316 - PFLU_RS08445 0.20 +0.2 1,883,316 - PFLU_RS08445 0.20 -2.2 1,883,316 - PFLU_RS08445 0.20 -1.1 1,883,316 - PFLU_RS08445 0.20 -1.0 1,883,316 - PFLU_RS08445 0.20 -1.3 1,883,316 - PFLU_RS08445 0.20 -1.1 1,883,376 - PFLU_RS08445 0.33 -0.4 1,883,376 - PFLU_RS08445 0.33 -0.4 1,883,541 + PFLU_RS08445 0.70 -0.8 1,883,541 + PFLU_RS08445 0.70 -0.4 1,883,541 + PFLU_RS08445 0.70 -1.9 1,883,542 - PFLU_RS08445 0.70 -0.0 1,883,542 - PFLU_RS08445 0.70 -2.3 1,883,542 - PFLU_RS08445 0.70 -0.9 1,883,542 - PFLU_RS08445 0.70 -1.3 1,883,542 - PFLU_RS08445 0.70 -1.2 1,883,551 - PFLU_RS08445 0.72 -2.9 1,883,583 + PFLU_RS08445 0.79 -1.6 1,883,583 + PFLU_RS08445 0.79 -1.5 1,883,584 - PFLU_RS08445 0.79 -1.4 1,883,584 - PFLU_RS08445 0.79 -0.9 1,883,584 - PFLU_RS08445 0.79 -2.2 1,883,584 - PFLU_RS08445 0.79 -2.2 1,883,683 + -2.5 1,883,684 - +2.2 1,883,684 - -0.7 1,883,684 - -1.3 1,883,684 - -0.9 1,883,684 - +0.1 1,883,684 - -1.8 1,883,701 + +0.1 1,883,701 + -0.5 1,883,701 + +0.0 1,883,701 + +0.2 1,883,702 - -1.6 1,883,702 - -0.9 1,883,702 - -0.3 1,883,714 - -0.5 1,883,740 + -1.5 1,883,741 - -2.3 1,883,821 + -2.8 1,883,821 + -0.1 1,883,822 - -1.2 1,883,822 - +1.5 1,883,822 - +0.5 1,883,822 - -0.1 1,883,875 + PFLU_RS08450 0.12 +1.1 1,883,875 + PFLU_RS08450 0.12 -0.5 1,883,875 + PFLU_RS08450 0.12 -0.1 1,883,875 + PFLU_RS08450 0.12 +0.4 1,883,875 + PFLU_RS08450 0.12 -0.7 1,883,875 + PFLU_RS08450 0.12 -0.4 1,883,875 + PFLU_RS08450 0.12 -1.4 1,883,875 + PFLU_RS08450 0.12 -2.7 1,883,876 - PFLU_RS08450 0.13 -1.8 1,883,876 - PFLU_RS08450 0.13 +1.1 1,883,876 - PFLU_RS08450 0.13 -1.0 1,883,876 - PFLU_RS08450 0.13 -0.5 1,883,876 - PFLU_RS08450 0.13 +0.3 1,883,876 - PFLU_RS08450 0.13 +0.7 1,883,876 - PFLU_RS08450 0.13 +0.9 1,883,876 - PFLU_RS08450 0.13 -1.7 1,883,876 - PFLU_RS08450 0.13 -2.6 1,883,876 - PFLU_RS08450 0.13 -0.8 1,883,876 - PFLU_RS08450 0.13 -1.1 1,883,947 + PFLU_RS08450 0.20 -0.5 1,883,947 + PFLU_RS08450 0.20 +0.8 1,883,948 - PFLU_RS08450 0.20 -1.0 1,883,948 - PFLU_RS08450 0.20 -0.2 1,883,948 - PFLU_RS08450 0.20 -2.1 1,883,948 - PFLU_RS08450 0.20 -2.3 1,883,948 - PFLU_RS08450 0.20 -1.5 1,884,056 - PFLU_RS08450 0.31 +0.2 1,884,248 + PFLU_RS08450 0.52 -0.8 1,884,249 - PFLU_RS08450 0.52 -0.6 1,884,346 + PFLU_RS08450 0.62 -0.6 1,884,346 + PFLU_RS08450 0.62 -1.3 1,884,346 + PFLU_RS08450 0.62 -0.9 1,884,346 + PFLU_RS08450 0.62 +0.3 1,884,347 - PFLU_RS08450 0.62 -0.2 1,884,347 - PFLU_RS08450 0.62 -2.6 1,884,660 + -0.7 1,884,660 + -0.5 1,884,660 + -0.4 1,884,660 + -1.0 1,884,660 + -0.9 1,884,660 + -0.8 1,884,660 + +0.0 1,884,660 + -1.8 1,884,660 + -1.8 1,884,660 + -0.8 1,884,660 + -1.6 1,884,660 + -0.6 1,884,660 + -2.3 1,884,660 + -1.5 1,884,660 + -1.8 1,884,660 + +0.3 1,884,660 + -0.1 1,884,660 + -2.7 1,884,660 + -2.0 1,884,661 - -0.5 1,884,661 - -0.0 1,884,661 - -1.2 1,884,661 - -3.4 1,884,661 - +0.7 1,884,661 - -2.3 1,884,661 - +0.2 1,884,661 - -0.1 1,884,661 - -1.1 1,884,661 - -0.9 1,884,661 - +0.0 1,884,661 - -0.1
Or see this region's nucleotide sequence