Experiment: KB with Estragole 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3919 and Psyr_3920 are separated by 151 nucleotides Psyr_3920 and Psyr_3921 are separated by 294 nucleotides Psyr_3921 and Psyr_3922 are separated by 110 nucleotides Psyr_3922 and Psyr_3923 are separated by 46 nucleotides
Psyr_3919: Psyr_3919 - D-alanine--D-alanine ligase, at 4,661,904 to 4,662,995
_3919
Psyr_3920: Psyr_3920 - LSU ribosomal protein L31P, at 4,663,147 to 4,663,428
_3920
Psyr_3921: Psyr_3921 - membrane protein, putative, at 4,663,723 to 4,664,853
_3921
Psyr_3922: Psyr_3922 - conserved hypothetical protein, at 4,664,964 to 4,665,629
_3922
Psyr_3923: Psyr_3923 - hypothetical protein, at 4,665,676 to 4,666,611
_3923
Position (kb) 4663
4664
4665 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4662.792 kb on + strand, within Psyr_3919 at 4662.792 kb on + strand, within Psyr_3919 at 4662.792 kb on + strand, within Psyr_3919 at 4662.793 kb on - strand, within Psyr_3919 at 4662.793 kb on - strand, within Psyr_3919 at 4662.793 kb on - strand, within Psyr_3919 at 4662.829 kb on + strand, within Psyr_3919 at 4662.830 kb on - strand, within Psyr_3919 at 4662.893 kb on - strand at 4663.003 kb on - strand at 4663.028 kb on + strand at 4663.047 kb on + strand at 4663.047 kb on + strand at 4663.048 kb on - strand at 4663.055 kb on + strand at 4663.056 kb on - strand at 4663.056 kb on - strand at 4663.256 kb on + strand, within Psyr_3920 at 4663.256 kb on + strand, within Psyr_3920 at 4663.256 kb on + strand, within Psyr_3920 at 4663.256 kb on + strand, within Psyr_3920 at 4663.256 kb on + strand, within Psyr_3920 at 4663.257 kb on - strand, within Psyr_3920 at 4663.257 kb on - strand, within Psyr_3920 at 4663.257 kb on - strand, within Psyr_3920 at 4663.295 kb on + strand, within Psyr_3920 at 4663.295 kb on + strand, within Psyr_3920 at 4663.295 kb on + strand, within Psyr_3920 at 4663.296 kb on - strand, within Psyr_3920 at 4663.296 kb on - strand, within Psyr_3920 at 4663.296 kb on - strand, within Psyr_3920 at 4663.301 kb on + strand, within Psyr_3920 at 4663.301 kb on + strand, within Psyr_3920 at 4663.301 kb on + strand, within Psyr_3920 at 4663.301 kb on + strand, within Psyr_3920 at 4663.301 kb on + strand, within Psyr_3920 at 4663.301 kb on + strand, within Psyr_3920 at 4663.301 kb on + strand, within Psyr_3920 at 4663.302 kb on - strand, within Psyr_3920 at 4663.302 kb on - strand, within Psyr_3920 at 4663.305 kb on + strand, within Psyr_3920 at 4663.305 kb on + strand, within Psyr_3920 at 4663.342 kb on + strand, within Psyr_3920 at 4663.457 kb on + strand at 4663.458 kb on - strand at 4663.461 kb on + strand at 4663.462 kb on - strand at 4663.463 kb on + strand at 4663.555 kb on - strand at 4663.590 kb on + strand at 4663.591 kb on - strand at 4663.591 kb on - strand at 4663.593 kb on + strand at 4663.594 kb on - strand at 4663.594 kb on - strand at 4663.686 kb on + strand at 4663.687 kb on - strand at 4663.693 kb on - strand at 4663.693 kb on - strand at 4663.693 kb on - strand at 4663.728 kb on + strand at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.980 kb on + strand, within Psyr_3921 at 4663.980 kb on + strand, within Psyr_3921 at 4663.980 kb on + strand, within Psyr_3921 at 4663.981 kb on - strand, within Psyr_3921 at 4663.981 kb on - strand, within Psyr_3921 at 4663.981 kb on - strand, within Psyr_3921 at 4663.981 kb on - strand, within Psyr_3921 at 4663.981 kb on - strand, within Psyr_3921 at 4663.981 kb on - strand, within Psyr_3921 at 4664.071 kb on + strand, within Psyr_3921 at 4664.071 kb on + strand, within Psyr_3921 at 4664.071 kb on + strand, within Psyr_3921 at 4664.071 kb on + strand, within Psyr_3921 at 4664.071 kb on + strand, within Psyr_3921 at 4664.071 kb on + strand, within Psyr_3921 at 4664.072 kb on - strand, within Psyr_3921 at 4664.072 kb on - strand, within Psyr_3921 at 4664.072 kb on - strand, within Psyr_3921 at 4664.072 kb on - strand, within Psyr_3921 at 4664.072 kb on - strand, within Psyr_3921 at 4664.155 kb on + strand, within Psyr_3921 at 4664.155 kb on + strand, within Psyr_3921 at 4664.155 kb on + strand, within Psyr_3921 at 4664.155 kb on + strand, within Psyr_3921 at 4664.155 kb on + strand, within Psyr_3921 at 4664.155 kb on + strand, within Psyr_3921 at 4664.155 kb on + strand, within Psyr_3921 at 4664.155 kb on + strand, within Psyr_3921 at 4664.155 kb on + strand, within Psyr_3921 at 4664.155 kb on + strand, within Psyr_3921 at 4664.155 kb on + strand, within Psyr_3921 at 4664.155 kb on + strand, within Psyr_3921 at 4664.155 kb on + strand, within Psyr_3921 at 4664.155 kb on + strand, within Psyr_3921 at 4664.155 kb on + strand, within Psyr_3921 at 4664.155 kb on + strand, within Psyr_3921 at 4664.155 kb on + strand, within Psyr_3921 at 4664.155 kb on + strand, within Psyr_3921 at 4664.156 kb on - strand, within Psyr_3921 at 4664.156 kb on - strand, within Psyr_3921 at 4664.156 kb on - strand, within Psyr_3921 at 4664.156 kb on - strand, within Psyr_3921 at 4664.156 kb on - strand, within Psyr_3921 at 4664.157 kb on + strand, within Psyr_3921 at 4664.157 kb on + strand, within Psyr_3921 at 4664.242 kb on + strand, within Psyr_3921 at 4664.281 kb on + strand, within Psyr_3921 at 4664.302 kb on + strand, within Psyr_3921 at 4664.302 kb on + strand, within Psyr_3921 at 4664.302 kb on + strand, within Psyr_3921 at 4664.302 kb on + strand, within Psyr_3921 at 4664.302 kb on + strand, within Psyr_3921 at 4664.302 kb on + strand, within Psyr_3921 at 4664.303 kb on - strand, within Psyr_3921 at 4664.431 kb on + strand, within Psyr_3921 at 4664.431 kb on + strand, within Psyr_3921 at 4664.431 kb on + strand, within Psyr_3921 at 4664.431 kb on + strand, within Psyr_3921 at 4664.431 kb on + strand, within Psyr_3921 at 4664.431 kb on + strand, within Psyr_3921 at 4664.431 kb on + strand, within Psyr_3921 at 4664.431 kb on + strand, within Psyr_3921 at 4664.431 kb on + strand, within Psyr_3921 at 4664.431 kb on + strand, within Psyr_3921 at 4664.432 kb on - strand, within Psyr_3921 at 4664.432 kb on - strand at 4664.432 kb on - strand, within Psyr_3921 at 4664.432 kb on - strand, within Psyr_3921 at 4664.432 kb on - strand, within Psyr_3921 at 4664.432 kb on - strand, within Psyr_3921 at 4664.432 kb on - strand, within Psyr_3921 at 4664.432 kb on - strand, within Psyr_3921 at 4664.432 kb on - strand, within Psyr_3921 at 4664.432 kb on - strand, within Psyr_3921 at 4664.559 kb on - strand, within Psyr_3921 at 4664.581 kb on + strand, within Psyr_3921 at 4664.581 kb on + strand, within Psyr_3921 at 4664.582 kb on - strand, within Psyr_3921 at 4664.736 kb on + strand, within Psyr_3921 at 4664.736 kb on + strand, within Psyr_3921 at 4664.736 kb on + strand, within Psyr_3921 at 4664.938 kb on + strand at 4664.971 kb on + strand at 4664.972 kb on - strand at 4664.972 kb on - strand at 4664.972 kb on - strand at 4664.972 kb on - strand at 4664.972 kb on - strand at 4665.020 kb on - strand at 4665.030 kb on - strand at 4665.112 kb on - strand, within Psyr_3922 at 4665.112 kb on - strand, within Psyr_3922 at 4665.181 kb on + strand, within Psyr_3922 at 4665.181 kb on + strand, within Psyr_3922 at 4665.181 kb on + strand, within Psyr_3922 at 4665.182 kb on - strand, within Psyr_3922 at 4665.234 kb on + strand, within Psyr_3922 at 4665.235 kb on - strand, within Psyr_3922 at 4665.235 kb on - strand, within Psyr_3922 at 4665.235 kb on - strand, within Psyr_3922 at 4665.235 kb on - strand, within Psyr_3922 at 4665.240 kb on - strand, within Psyr_3922 at 4665.284 kb on + strand, within Psyr_3922 at 4665.415 kb on + strand, within Psyr_3922 at 4665.497 kb on + strand, within Psyr_3922 at 4665.584 kb on + strand at 4665.584 kb on + strand at 4665.585 kb on - strand at 4665.612 kb on - strand at 4665.732 kb on - strand at 4665.798 kb on + strand, within Psyr_3923 at 4665.798 kb on + strand, within Psyr_3923 at 4665.798 kb on + strand, within Psyr_3923 at 4665.799 kb on - strand, within Psyr_3923 at 4665.799 kb on - strand, within Psyr_3923 at 4665.799 kb on - strand, within Psyr_3923 at 4665.799 kb on - strand, within Psyr_3923 at 4665.799 kb on - strand, within Psyr_3923 at 4665.800 kb on + strand, within Psyr_3923 at 4665.801 kb on - strand, within Psyr_3923
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Estragole 10 mM remove 4,662,792 + Psyr_3919 0.81 -0.2 4,662,792 + Psyr_3919 0.81 -0.6 4,662,792 + Psyr_3919 0.81 -0.3 4,662,793 - Psyr_3919 0.81 -0.9 4,662,793 - Psyr_3919 0.81 -1.3 4,662,793 - Psyr_3919 0.81 +2.1 4,662,829 + Psyr_3919 0.85 -2.0 4,662,830 - Psyr_3919 0.85 +0.0 4,662,893 - +0.5 4,663,003 - -0.1 4,663,028 + +0.7 4,663,047 + -0.2 4,663,047 + +1.1 4,663,048 - -1.0 4,663,055 + -0.0 4,663,056 - +2.1 4,663,056 - +1.3 4,663,256 + Psyr_3920 0.39 -0.3 4,663,256 + Psyr_3920 0.39 +0.7 4,663,256 + Psyr_3920 0.39 +0.7 4,663,256 + Psyr_3920 0.39 +0.3 4,663,256 + Psyr_3920 0.39 -0.5 4,663,257 - Psyr_3920 0.39 +0.3 4,663,257 - Psyr_3920 0.39 +0.5 4,663,257 - Psyr_3920 0.39 +0.1 4,663,295 + Psyr_3920 0.52 +0.3 4,663,295 + Psyr_3920 0.52 -0.4 4,663,295 + Psyr_3920 0.52 -0.0 4,663,296 - Psyr_3920 0.53 +0.2 4,663,296 - Psyr_3920 0.53 -0.0 4,663,296 - Psyr_3920 0.53 +1.2 4,663,301 + Psyr_3920 0.55 +0.9 4,663,301 + Psyr_3920 0.55 +0.2 4,663,301 + Psyr_3920 0.55 +0.2 4,663,301 + Psyr_3920 0.55 -1.5 4,663,301 + Psyr_3920 0.55 +0.3 4,663,301 + Psyr_3920 0.55 -0.1 4,663,301 + Psyr_3920 0.55 +0.3 4,663,302 - Psyr_3920 0.55 +0.4 4,663,302 - Psyr_3920 0.55 +0.8 4,663,305 + Psyr_3920 0.56 -0.5 4,663,305 + Psyr_3920 0.56 -1.1 4,663,342 + Psyr_3920 0.69 -1.6 4,663,457 + -0.5 4,663,458 - -1.0 4,663,461 + -0.5 4,663,462 - -1.0 4,663,463 + -0.2 4,663,555 - -0.4 4,663,590 + -0.3 4,663,591 - +0.2 4,663,591 - +0.1 4,663,593 + -0.1 4,663,594 - -0.1 4,663,594 - -0.4 4,663,686 + +0.2 4,663,687 - +0.2 4,663,693 - +0.8 4,663,693 - -0.0 4,663,693 - -1.2 4,663,728 + +0.5 4,663,969 + Psyr_3921 0.22 +0.9 4,663,969 + Psyr_3921 0.22 +0.2 4,663,969 + Psyr_3921 0.22 +0.5 4,663,969 + Psyr_3921 0.22 -0.2 4,663,969 + Psyr_3921 0.22 -1.0 4,663,969 + Psyr_3921 0.22 -1.2 4,663,969 + Psyr_3921 0.22 +0.7 4,663,969 + Psyr_3921 0.22 +1.1 4,663,969 + Psyr_3921 0.22 +1.6 4,663,969 + Psyr_3921 0.22 +0.9 4,663,969 + Psyr_3921 0.22 -0.3 4,663,969 + Psyr_3921 0.22 -0.2 4,663,969 + Psyr_3921 0.22 -1.6 4,663,969 + Psyr_3921 0.22 -0.3 4,663,969 + Psyr_3921 0.22 -1.2 4,663,969 + Psyr_3921 0.22 -1.0 4,663,970 - Psyr_3921 0.22 -0.5 4,663,970 - Psyr_3921 0.22 +0.4 4,663,970 - Psyr_3921 0.22 +0.6 4,663,970 - Psyr_3921 0.22 -1.0 4,663,970 - Psyr_3921 0.22 -0.5 4,663,970 - Psyr_3921 0.22 +0.3 4,663,970 - Psyr_3921 0.22 -0.5 4,663,970 - Psyr_3921 0.22 +0.5 4,663,970 - Psyr_3921 0.22 +0.1 4,663,970 - Psyr_3921 0.22 +0.7 4,663,970 - Psyr_3921 0.22 +0.5 4,663,970 - Psyr_3921 0.22 +0.1 4,663,970 - Psyr_3921 0.22 -0.9 4,663,970 - Psyr_3921 0.22 -0.0 4,663,980 + Psyr_3921 0.23 -0.8 4,663,980 + Psyr_3921 0.23 -0.2 4,663,980 + Psyr_3921 0.23 -0.2 4,663,981 - Psyr_3921 0.23 -0.1 4,663,981 - Psyr_3921 0.23 -0.2 4,663,981 - Psyr_3921 0.23 +0.7 4,663,981 - Psyr_3921 0.23 -0.9 4,663,981 - Psyr_3921 0.23 -0.8 4,663,981 - Psyr_3921 0.23 +1.1 4,664,071 + Psyr_3921 0.31 -0.1 4,664,071 + Psyr_3921 0.31 -0.9 4,664,071 + Psyr_3921 0.31 -0.6 4,664,071 + Psyr_3921 0.31 -1.2 4,664,071 + Psyr_3921 0.31 +0.4 4,664,071 + Psyr_3921 0.31 +1.1 4,664,072 - Psyr_3921 0.31 -0.5 4,664,072 - Psyr_3921 0.31 +0.5 4,664,072 - Psyr_3921 0.31 +0.1 4,664,072 - Psyr_3921 0.31 -0.2 4,664,072 - Psyr_3921 0.31 +0.4 4,664,155 + Psyr_3921 0.38 -0.4 4,664,155 + Psyr_3921 0.38 -0.5 4,664,155 + Psyr_3921 0.38 +0.1 4,664,155 + Psyr_3921 0.38 +0.6 4,664,155 + Psyr_3921 0.38 -0.2 4,664,155 + Psyr_3921 0.38 +0.8 4,664,155 + Psyr_3921 0.38 +0.4 4,664,155 + Psyr_3921 0.38 +0.0 4,664,155 + Psyr_3921 0.38 +0.0 4,664,155 + Psyr_3921 0.38 -0.6 4,664,155 + Psyr_3921 0.38 -0.6 4,664,155 + Psyr_3921 0.38 +0.2 4,664,155 + Psyr_3921 0.38 -0.3 4,664,155 + Psyr_3921 0.38 -0.7 4,664,155 + Psyr_3921 0.38 -0.2 4,664,155 + Psyr_3921 0.38 +0.8 4,664,155 + Psyr_3921 0.38 +0.2 4,664,155 + Psyr_3921 0.38 -0.3 4,664,156 - Psyr_3921 0.38 -0.8 4,664,156 - Psyr_3921 0.38 -1.2 4,664,156 - Psyr_3921 0.38 +0.1 4,664,156 - Psyr_3921 0.38 -1.0 4,664,156 - Psyr_3921 0.38 -0.5 4,664,157 + Psyr_3921 0.38 +1.5 4,664,157 + Psyr_3921 0.38 -0.2 4,664,242 + Psyr_3921 0.46 +0.1 4,664,281 + Psyr_3921 0.49 -0.3 4,664,302 + Psyr_3921 0.51 -0.9 4,664,302 + Psyr_3921 0.51 -0.3 4,664,302 + Psyr_3921 0.51 +0.5 4,664,302 + Psyr_3921 0.51 -1.1 4,664,302 + Psyr_3921 0.51 -2.0 4,664,302 + Psyr_3921 0.51 +0.1 4,664,303 - Psyr_3921 0.51 -0.1 4,664,431 + Psyr_3921 0.63 -1.2 4,664,431 + Psyr_3921 0.63 -0.8 4,664,431 + Psyr_3921 0.63 -1.1 4,664,431 + Psyr_3921 0.63 -0.2 4,664,431 + Psyr_3921 0.63 -0.3 4,664,431 + Psyr_3921 0.63 -2.2 4,664,431 + Psyr_3921 0.63 +0.1 4,664,431 + Psyr_3921 0.63 -0.1 4,664,431 + Psyr_3921 0.63 +0.1 4,664,431 + Psyr_3921 0.63 +1.1 4,664,432 - Psyr_3921 0.63 -1.0 4,664,432 - +2.1 4,664,432 - Psyr_3921 0.63 -1.0 4,664,432 - Psyr_3921 0.63 -0.6 4,664,432 - Psyr_3921 0.63 +0.4 4,664,432 - Psyr_3921 0.63 -0.3 4,664,432 - Psyr_3921 0.63 -2.2 4,664,432 - Psyr_3921 0.63 +0.3 4,664,432 - Psyr_3921 0.63 -0.9 4,664,432 - Psyr_3921 0.63 -1.0 4,664,559 - Psyr_3921 0.74 -1.4 4,664,581 + Psyr_3921 0.76 +0.3 4,664,581 + Psyr_3921 0.76 +0.6 4,664,582 - Psyr_3921 0.76 -1.0 4,664,736 + Psyr_3921 0.90 +0.4 4,664,736 + Psyr_3921 0.90 +0.4 4,664,736 + Psyr_3921 0.90 -0.9 4,664,938 + +0.0 4,664,971 + +0.3 4,664,972 - -0.1 4,664,972 - +0.0 4,664,972 - -0.3 4,664,972 - +0.8 4,664,972 - -0.1 4,665,020 - +0.4 4,665,030 - +0.1 4,665,112 - Psyr_3922 0.22 +0.7 4,665,112 - Psyr_3922 0.22 -0.7 4,665,181 + Psyr_3922 0.33 +1.1 4,665,181 + Psyr_3922 0.33 -0.7 4,665,181 + Psyr_3922 0.33 +0.1 4,665,182 - Psyr_3922 0.33 -0.3 4,665,234 + Psyr_3922 0.41 +0.1 4,665,235 - Psyr_3922 0.41 -0.5 4,665,235 - Psyr_3922 0.41 +0.1 4,665,235 - Psyr_3922 0.41 -1.5 4,665,235 - Psyr_3922 0.41 +0.1 4,665,240 - Psyr_3922 0.41 +0.0 4,665,284 + Psyr_3922 0.48 +1.1 4,665,415 + Psyr_3922 0.68 -0.1 4,665,497 + Psyr_3922 0.80 -0.9 4,665,584 + -0.3 4,665,584 + +0.2 4,665,585 - +1.0 4,665,612 - -1.1 4,665,732 - -2.1 4,665,798 + Psyr_3923 0.13 -1.8 4,665,798 + Psyr_3923 0.13 -0.6 4,665,798 + Psyr_3923 0.13 -2.3 4,665,799 - Psyr_3923 0.13 -0.3 4,665,799 - Psyr_3923 0.13 +0.0 4,665,799 - Psyr_3923 0.13 +0.1 4,665,799 - Psyr_3923 0.13 -0.0 4,665,799 - Psyr_3923 0.13 -0.2 4,665,800 + Psyr_3923 0.13 -0.3 4,665,801 - Psyr_3923 0.13 -0.9
Or see this region's nucleotide sequence