Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS28895

Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with TAPS
6,425,191	+		PFLU_RS28885	0.83	+0.5
6,425,191	+		PFLU_RS28885	0.83	-2.3
6,425,191	+		PFLU_RS28885	0.83	+0.6
6,425,191	+		PFLU_RS28885	0.83	+1.2
6,425,191	+		PFLU_RS28885	0.83	+0.3
6,425,191	+		PFLU_RS28885	0.83	+0.9
6,425,191	+		PFLU_RS28885	0.83	-2.1
6,425,191	+		PFLU_RS28885	0.83	-0.3
6,425,191	+		PFLU_RS28885	0.83	-0.7
6,425,191	+		PFLU_RS28885	0.83	-2.5
6,425,191	+		PFLU_RS28885	0.83	-1.4
6,425,191	+		PFLU_RS28885	0.83	-0.0
6,425,191	+		PFLU_RS28885	0.83	+1.1
6,425,192	-		PFLU_RS28885	0.83	-0.3
6,425,192	-		PFLU_RS28885	0.83	-1.1
6,425,192	-		PFLU_RS28885	0.83	-0.4
6,425,192	-		PFLU_RS28885	0.83	+1.9
6,425,192	-		PFLU_RS28885	0.83	+0.6
6,425,192	-		PFLU_RS28885	0.83	-2.2
6,425,192	-		PFLU_RS28885	0.83	-3.3
6,425,192	-		PFLU_RS28885	0.83	-0.1
6,425,192	-		PFLU_RS28885	0.83	+0.8
6,425,192	-		PFLU_RS28885	0.83	-0.6
6,425,192	-		PFLU_RS28885	0.83	-0.0
6,425,209	+		PFLU_RS28885	0.85	-0.2
6,425,209	+		PFLU_RS28885	0.85	+0.4
6,425,209	+		PFLU_RS28885	0.85	+1.1
6,425,209	+		PFLU_RS28885	0.85	+0.8
6,425,209	+		PFLU_RS28885	0.85	+0.3
6,425,209	+		PFLU_RS28885	0.85	+1.2
6,425,209	+		PFLU_RS28885	0.85	+0.4
6,425,210	-		PFLU_RS28885	0.85	+0.1
6,425,210	-		PFLU_RS28885	0.85	-0.9
6,425,210	-		PFLU_RS28885	0.85	+1.0
6,425,433	+		PFLU_RS28890	0.16	-0.3
6,425,433	+		PFLU_RS28890	0.16	-1.2
6,425,433	+		PFLU_RS28890	0.16	+2.0
6,425,434	-		PFLU_RS28890	0.17	+0.5
6,425,434	-		PFLU_RS28890	0.17	+1.3
6,425,434	-		PFLU_RS28890	0.17	+0.6
6,425,434	-		PFLU_RS28890	0.17	+0.2
6,425,434	-		PFLU_RS28890	0.17	-0.6
6,425,434	-		PFLU_RS28890	0.17	+0.6
6,425,434	-		PFLU_RS28890	0.17	-1.8
6,425,434	-		PFLU_RS28890	0.17	-0.6
6,425,450	+		PFLU_RS28890	0.20	-0.5
6,425,451	-		PFLU_RS28890	0.20	+0.4
6,425,451	-		PFLU_RS28890	0.20	-2.7
6,425,451	-		PFLU_RS28890	0.20	+1.0
6,425,451	-		PFLU_RS28890	0.20	-0.8
6,425,570	+		PFLU_RS28890	0.47	-0.0
6,425,570	+		PFLU_RS28890	0.47	-2.5
6,425,570	+		PFLU_RS28890	0.47	-1.7
6,425,570	+		PFLU_RS28890	0.47	+1.6
6,425,570	+		PFLU_RS28890	0.47	+1.0
6,425,570	+		PFLU_RS28890	0.47	+1.1
6,425,570	+		PFLU_RS28890	0.47	-0.3
6,425,570	+		PFLU_RS28890	0.47	+0.7
6,425,570	+		PFLU_RS28890	0.47	-0.1
6,425,570	+		PFLU_RS28890	0.47	+0.6
6,425,570	+		PFLU_RS28890	0.47	-0.2
6,425,570	+		PFLU_RS28890	0.47	-2.7
6,425,571	-		PFLU_RS28890	0.47	+1.1
6,425,571	-		PFLU_RS28890	0.47	+0.1
6,425,571	-		PFLU_RS28890	0.47	-1.9
6,425,571	-		PFLU_RS28890	0.47	+0.9
6,425,571	-		PFLU_RS28890	0.47	-1.0
6,425,571	-		PFLU_RS28890	0.47	+0.3
6,425,679	+		PFLU_RS28890	0.71	+1.3
6,425,679	+		PFLU_RS28890	0.71	+1.1
6,425,679	+		PFLU_RS28890	0.71	-0.2
6,425,679	+		PFLU_RS28890	0.71	-1.2
6,425,679	+		PFLU_RS28890	0.71	-2.6
6,425,679	+		PFLU_RS28890	0.71	+1.2
6,425,679	+		PFLU_RS28890	0.71	+0.3
6,425,679	+		PFLU_RS28890	0.71	+0.1
6,425,679	+		PFLU_RS28890	0.71	-0.6
6,425,679	+		PFLU_RS28890	0.71	-0.8
6,425,679	+		PFLU_RS28890	0.71	-1.0
6,425,679	+		PFLU_RS28890	0.71	+2.0
6,425,679	+		PFLU_RS28890	0.71	-0.8
6,425,679	+		PFLU_RS28890	0.71	+2.2
6,425,679	+		PFLU_RS28890	0.71	-0.8
6,425,679	+		PFLU_RS28890	0.71	+0.3
6,425,679	+		PFLU_RS28890	0.71	-1.0
6,425,679	+		PFLU_RS28890	0.71	+0.4
6,425,680	-		PFLU_RS28890	0.72	-1.6
6,425,680	-		PFLU_RS28890	0.72	-2.7
6,425,680	-		PFLU_RS28890	0.72	-2.0
6,425,680	-		PFLU_RS28890	0.72	+0.1
6,425,680	-		PFLU_RS28890	0.72	+0.4
6,425,680	-		PFLU_RS28890	0.72	-1.2
6,425,680	-		PFLU_RS28890	0.72	+0.7
6,425,680	-		PFLU_RS28890	0.72	+0.9
6,425,680	-		PFLU_RS28890	0.72	+1.0
6,425,680	-		PFLU_RS28890	0.72	-1.8
6,425,680	-		PFLU_RS28890	0.72	+0.9
6,425,680	-		PFLU_RS28890	0.72	+0.0
6,425,680	-		PFLU_RS28890	0.72	-1.4
6,425,680	-		PFLU_RS28890	0.72	-1.3
6,425,697	+		PFLU_RS28890	0.75	+0.0
6,425,697	+		PFLU_RS28890	0.75	+0.3
6,425,698	-		PFLU_RS28890	0.76	+0.6
6,425,698	-		PFLU_RS28890	0.76	-2.7
6,425,698	-		PFLU_RS28890	0.76	+1.0
6,425,698	-		PFLU_RS28890	0.76	-0.6
6,425,698	-		PFLU_RS28890	0.76	-1.5
6,425,757	+		PFLU_RS28890	0.89	-0.7
6,425,757	+		PFLU_RS28890	0.89	+0.5
6,425,757	+		PFLU_RS28890	0.89	+1.1
6,425,758	-		PFLU_RS28890	0.89	+0.3
6,425,787	+				+1.2
6,425,787	+				-0.1
6,425,787	+				+0.1
6,425,788	-				-0.1
6,425,788	-				-0.3
6,425,805	-				-0.3
6,425,805	-				+0.2
6,425,830	+				+2.5
6,425,831	-				-1.1
6,425,834	+				+0.2
6,425,834	+				+1.1
6,425,834	+				+0.6
6,425,834	+				+0.6
6,425,834	+				-0.5
6,425,834	+				+1.1
6,425,834	+				+0.5
6,425,834	+				+0.9
6,425,834	+				-1.3
6,425,834	+				-0.9
6,425,834	+				+0.2
6,425,834	+				+2.0
6,425,834	+				-0.2
6,425,835	-				+0.1
6,425,835	-				-0.3
6,425,835	-				+0.8
6,425,835	-				+1.3
6,425,835	-				+0.8
6,425,835	-				-0.1
6,425,835	-				+1.0
6,425,835	-				-0.2
6,425,835	-				-0.6
6,425,835	-				-0.3
6,425,835	-				+1.0
6,425,835	-				-1.5
6,425,842	+				+1.1
6,425,842	+				+0.6
6,425,842	+				-1.4
6,425,842	+				+0.1
6,425,842	+				+0.0
6,425,842	+				+0.8
6,425,842	+				+0.2
6,425,842	+				-0.6
6,425,843	-				-0.8
6,425,843	-				-2.6
6,425,843	-				-1.5
6,425,843	-				-1.7
6,425,843	-				-0.4
6,425,843	-				-0.5
6,425,847	+				-1.2
6,425,847	+				-0.2
6,425,847	+				-3.6
6,425,847	+				-0.1
6,425,847	+				-2.3
6,425,847	+				+0.2
6,425,847	+				-1.8
6,425,848	-				-0.9
6,425,848	-				-0.9
6,425,848	-				+0.5
6,425,853	+				+1.2
6,425,854	-				+1.3
6,425,854	-				-2.8
6,425,888	+				-1.7
6,425,888	+				+0.9
6,425,888	+				-0.5
6,425,888	+				+0.5
6,425,888	+				+0.5
6,425,888	+				+1.5
6,425,888	+				+0.8
6,425,888	+				+0.3
6,425,888	+				-1.0
6,425,888	+				+0.6
6,425,888	+				+0.7
6,425,889	-				-1.1
6,425,889	-				+0.4
6,425,889	-				-0.3
6,425,889	-				-0.8
6,425,889	-				+0.6
6,425,889	-				+0.0
6,425,889	-				+0.2
6,425,889	-				-0.2
6,425,889	-				-0.9
6,425,889	-				+0.5
6,425,889	-				-0.2
6,425,889	-				-1.5
6,425,993	+		PFLU_RS28895	0.37	+0.4
6,425,993	+		PFLU_RS28895	0.37	-1.4
6,425,994	-		PFLU_RS28895	0.37	-0.3
6,426,188	+				-0.1
6,426,189	-				+0.4
6,426,189	-				-1.4
6,426,249	-				+0.6
6,426,249	-				-1.5
6,426,267	+				-0.3
6,426,267	+				-2.1
6,426,267	+				-2.2
6,426,267	+				-0.5
6,426,267	+				-1.6
6,426,267	+				+2.3
6,426,268	-				+0.5
6,426,268	-				-0.1
6,426,268	-				-2.2
6,426,268	-				-0.8
6,426,270	+				-1.6
6,426,270	+				-1.2
6,426,270	+				-0.5
6,426,270	+				-1.8
6,426,270	+				-0.1
6,426,270	+				-0.1
6,426,270	+				-0.6
6,426,270	+				-1.1
6,426,270	+				-1.0
6,426,270	+				-0.8
6,426,270	+				-0.4
6,426,270	+				+0.4
6,426,270	+				+0.0
6,426,270	+				+0.1
6,426,270	+				+0.3
6,426,270	+				+0.1
6,426,270	+				+1.1
6,426,270	+				+1.8
6,426,270	+				+0.1
6,426,270	+				-1.0
6,426,271	-				-1.2
6,426,271	-				+1.0
6,426,271	-				+0.4
6,426,271	-				-0.3
6,426,271	-				-1.2
6,426,271	-				-0.4
6,426,271	-				-0.6
6,426,271	-				+0.2
6,426,271	-				-0.2
6,426,271	-				-1.7
6,426,271	-				-0.0
6,426,271	-				+0.7
6,426,271	-				-1.4
6,426,271	-				-0.6
6,426,274	+				+0.4
6,426,274	+				-0.3
6,426,274	+				-2.3
6,426,274	+				+0.7
6,426,274	+				-0.6
6,426,274	+				-1.0
6,426,274	+				+0.7
6,426,274	+				-0.4
6,426,274	+				+1.0
6,426,274	+				-0.7
6,426,274	+				+0.5
6,426,274	+				+0.1
6,426,274	+				+1.7
6,426,274	+				-1.2
6,426,274	+				-0.1
6,426,274	+				+0.9
6,426,274	+				+0.1
6,426,274	+				-0.3
6,426,274	+				+0.3
6,426,274	+				+1.0
6,426,274	+				+1.1
6,426,274	+				-0.6
6,426,274	+				+0.6
6,426,274	+				-0.3
6,426,274	+				+1.5
6,426,274	+				+0.0
6,426,274	+				-0.5
6,426,274	+				+0.4
6,426,274	+				-0.7
6,426,274	+				-3.2
6,426,274	+				-0.0
6,426,274	+				+0.0
6,426,274	+				+0.7
6,426,274	+				+0.7
6,426,274	+				+3.2
6,426,274	+				+0.2
6,426,274	+				+0.8
6,426,274	+				+1.0
6,426,274	+				-0.2
6,426,274	+				+0.6
6,426,274	+				-0.5
6,426,274	+				-1.5
6,426,274	+				-1.3
6,426,274	+				+2.9
6,426,274	+				+0.8
6,426,274	+				-1.8
6,426,274	+				-1.1
6,426,274	+				-0.8
6,426,274	+				-0.5
6,426,274	+				-0.6
6,426,274	+				+0.6
6,426,274	+				-0.6
6,426,274	+				-2.0
6,426,274	+				+0.9
6,426,274	+				-1.6
6,426,274	+				-1.0
6,426,274	+				+0.0
6,426,274	+				+0.9
6,426,274	+				+0.6
6,426,274	+				+0.8
6,426,274	+				+0.4
6,426,274	+				-2.9
6,426,274	+				-0.7
6,426,274	+				+1.8
6,426,274	+				+0.4
6,426,274	+				+1.7
6,426,274	+				-0.2
6,426,274	+				-0.5
6,426,274	+				-0.4
6,426,274	+				-1.0
6,426,274	+				-0.7
6,426,274	+				-0.1
6,426,274	+				+0.7
6,426,274	+				-0.7
6,426,274	+				+1.9
6,426,274	+				-0.1
6,426,274	+				+0.2
6,426,274	+				-0.6
6,426,274	+				+0.5
6,426,274	+				+0.0
6,426,274	+				+2.0
6,426,274	+				-0.9
6,426,274	+				+0.7
6,426,274	+				-2.0
6,426,274	+				+1.3
6,426,274	+				+1.6
6,426,274	+				-0.8
6,426,274	+				+0.1
6,426,274	+				+1.3
6,426,274	+				-0.1
6,426,275	-				+0.4
6,426,275	-				+1.2
6,426,275	-				+0.9
6,426,275	-				+1.2
6,426,275	-				-1.0
6,426,275	-				+0.5
6,426,275	-				+0.5
6,426,275	-				-1.1
6,426,275	-				+1.1
6,426,275	-				-2.3
6,426,275	-				-0.0
6,426,275	-				-0.9
6,426,275	-				-1.0
6,426,275	-				+1.1
6,426,275	-				-1.6
6,426,275	-				+0.6
6,426,275	-				+0.8
6,426,275	-				+0.2
6,426,275	-				-1.8
6,426,275	-				+0.4
6,426,275	-				+0.8
6,426,275	-				-1.3
6,426,275	-				-0.7
6,426,275	-				-0.4
6,426,275	-				+0.3
6,426,275	-				+0.2
6,426,275	-				+0.6
6,426,275	-				-0.5
6,426,275	-				-1.3
6,426,275	-				-0.2
6,426,275	-				-0.6
6,426,275	-				+1.1
6,426,275	-				+1.8
6,426,275	-				-0.6
6,426,275	-				+0.9
6,426,275	-				-0.2
6,426,275	-				-0.0
6,426,275	-				+1.0
6,426,275	-				-1.7
6,426,275	-				-1.9
6,426,275	-				-0.3
6,426,275	-				+2.0
6,426,275	-				+0.7
6,426,275	-				+0.1
6,426,275	-				-2.2
6,426,275	-				-1.0
6,426,275	-				+0.5
6,426,275	-				+0.6
6,426,275	-				+0.7
6,426,275	-				-0.2
6,426,275	-				+0.4
6,426,275	-				+0.0
6,426,275	-				-0.7
6,426,275	-				-1.1
6,426,275	-				-1.3
6,426,275	-				+0.3
6,426,275	-				+0.7
6,426,275	-				+1.1
6,426,275	-				+2.7
6,426,275	-				-0.3
6,426,275	-				+1.2
6,426,275	-				+0.1
6,426,275	-				+0.9
6,426,275	-				-0.5
6,426,275	-				-0.7
6,426,275	-				+1.8
6,426,275	-				-1.2
6,426,275	-				+0.6
6,426,275	-				-0.7
6,426,275	-				+0.1
6,426,275	-				+0.7
6,426,275	-				-0.1
6,426,275	-				+0.5
6,426,275	-				-0.9
6,426,275	-				-1.6
6,426,275	-				+0.4
6,426,343	+				+0.7
6,426,343	+				+1.9
6,426,343	+				-1.0
6,426,343	+				-1.2
6,426,343	+				-0.4
6,426,343	+				+1.0
6,426,343	+				-2.4
6,426,343	+				+2.1
6,426,344	-				+0.4
6,426,344	-				-1.2
6,426,344	-				+0.2
6,426,344	-				+1.5
6,426,344	-				+1.2
6,426,344	-				-1.0
6,426,344	-				-0.4
6,426,344	-				+1.4
6,426,344	-				+0.5
6,426,344	-				-0.1
6,426,362	-				+0.9
6,426,394	+				+0.9
6,426,394	+				-0.6
6,426,395	-				-1.9
6,426,427	+				+0.8
6,426,428	-				+0.4
6,426,448	+		PFLU_RS28900	0.10	-3.2
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6,426,715	+		PFLU_RS28900	0.50	+0.0
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6,426,716	-		PFLU_RS28900	0.51	-0.6
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