Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS20350

Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with TAPS
4,593,120	+		PFLU_RS20335	0.63	-0.6
4,593,120	+		PFLU_RS20335	0.63	-0.8
4,593,211	-				-0.5
4,593,211	-				-0.9
4,593,247	+				-1.8
4,593,247	+				-0.6
4,593,247	+				-0.1
4,593,247	+				-1.6
4,593,247	+				+0.1
4,593,247	+				-1.3
4,593,247	+				-1.1
4,593,247	+				-1.2
4,593,248	-				-0.0
4,593,248	-				-1.4
4,593,248	-				+0.1
4,593,252	+				+1.4
4,593,253	-				+0.3
4,593,307	-				-1.7
4,593,307	-				+0.6
4,593,372	-				+0.3
4,593,372	-				+0.8
4,593,386	+				-0.1
4,593,386	+				-0.6
4,593,386	+				+2.2
4,593,386	+				+1.1
4,593,386	+				+0.3
4,593,387	-				-1.4
4,593,387	-				+1.1
4,593,398	+				+0.1
4,593,398	+				+0.7
4,593,398	+				+0.5
4,593,398	+				-0.9
4,593,398	+				-0.4
4,593,399	-				-2.3
4,593,399	-				+0.3
4,593,399	-				+0.8
4,593,399	-				-2.1
4,593,399	-				+0.5
4,593,399	-				+0.2
4,593,399	-				+0.6
4,593,475	+		PFLU_RS20340	0.30	-1.7
4,593,476	-		PFLU_RS20340	0.30	+0.4
4,593,485	-		PFLU_RS20340	0.33	-0.2
4,593,485	-		PFLU_RS20340	0.33	+0.3
4,593,485	-		PFLU_RS20340	0.33	+0.1
4,593,485	-		PFLU_RS20340	0.33	+1.1
4,593,488	+		PFLU_RS20340	0.34	+1.8
4,593,488	+		PFLU_RS20340	0.34	+0.6
4,593,488	+		PFLU_RS20340	0.34	+0.1
4,593,488	+		PFLU_RS20340	0.34	+0.1
4,593,488	+		PFLU_RS20340	0.34	+0.3
4,593,489	-		PFLU_RS20340	0.35	+1.3
4,593,489	-		PFLU_RS20340	0.35	-0.7
4,593,570	+		PFLU_RS20340	0.61	+0.9
4,593,570	+		PFLU_RS20340	0.61	-0.0
4,593,570	+		PFLU_RS20340	0.61	+0.1
4,593,570	+		PFLU_RS20340	0.61	+0.7
4,593,570	+		PFLU_RS20340	0.61	+0.7
4,593,570	+		PFLU_RS20340	0.61	-0.0
4,593,570	+		PFLU_RS20340	0.61	-1.6
4,593,570	+		PFLU_RS20340	0.61	-1.5
4,593,570	+		PFLU_RS20340	0.61	-2.5
4,593,570	+		PFLU_RS20340	0.61	+0.4
4,593,571	-		PFLU_RS20340	0.61	+1.3
4,593,571	-		PFLU_RS20340	0.61	+0.5
4,593,571	-		PFLU_RS20340	0.61	+0.0
4,593,571	-		PFLU_RS20340	0.61	-0.4
4,593,571	-		PFLU_RS20340	0.61	+1.6
4,593,571	-		PFLU_RS20340	0.61	-0.7
4,593,571	-		PFLU_RS20340	0.61	+1.2
4,593,571	-		PFLU_RS20340	0.61	-0.4
4,593,571	-		PFLU_RS20340	0.61	-1.7
4,593,571	-		PFLU_RS20340	0.61	+0.4
4,593,572	+		PFLU_RS20340	0.61	+2.2
4,593,572	+		PFLU_RS20340	0.61	+1.1
4,593,572	+		PFLU_RS20340	0.61	-2.2
4,593,572	+		PFLU_RS20340	0.61	-1.4
4,593,572	+		PFLU_RS20340	0.61	+0.0
4,593,572	+		PFLU_RS20340	0.61	-0.1
4,593,572	+		PFLU_RS20340	0.61	-1.1
4,593,572	+		PFLU_RS20340	0.61	-0.5
4,593,572	+		PFLU_RS20340	0.61	-0.1
4,593,572	+		PFLU_RS20340	0.61	-0.0
4,593,572	+		PFLU_RS20340	0.61	-2.7
4,593,573	-		PFLU_RS20340	0.62	+1.0
4,593,573	-		PFLU_RS20340	0.62	-1.0
4,593,573	-		PFLU_RS20340	0.62	+1.3
4,593,573	-		PFLU_RS20340	0.62	+1.3
4,593,573	-		PFLU_RS20340	0.62	+0.8
4,593,573	-		PFLU_RS20340	0.62	-0.4
4,593,573	-		PFLU_RS20340	0.62	+0.5
4,593,573	-		PFLU_RS20340	0.62	-0.1
4,593,621	+		PFLU_RS20340	0.77	-2.2
4,593,622	-		PFLU_RS20340	0.78	+0.4
4,593,622	-		PFLU_RS20340	0.78	-1.5
4,593,622	-		PFLU_RS20340	0.78	-1.6
4,593,709	+				+0.8
4,593,709	+				-0.6
4,593,709	+				-0.3
4,593,709	+				-0.7
4,593,710	-				+0.3
4,593,710	-				-1.3
4,593,710	-				-1.6
4,593,764	+				+0.5
4,593,764	+				+0.3
4,593,764	+				-0.1
4,593,764	+				-0.0
4,593,764	+				+0.5
4,593,764	+				+2.6
4,593,764	+				-1.2
4,593,764	+				-0.9
4,593,765	-				+1.2
4,593,765	-				+0.3
4,593,765	-				-1.5
4,593,765	-				+1.0
4,593,765	-				-0.9
4,593,765	-				+1.0
4,593,765	-				-0.1
4,593,765	-				+0.6
4,593,765	-				+2.0
4,593,765	-				+0.7
4,593,765	-				+1.3
4,593,765	-				+0.2
4,593,765	-				-1.4
4,593,765	-				+0.0
4,593,765	-				-0.5
4,593,768	+				+1.4
4,593,768	+				+1.5
4,593,768	+				-0.8
4,593,768	+				-0.7
4,593,768	+				+1.2
4,593,768	+				-0.6
4,593,768	+				+0.5
4,593,768	+				-0.2
4,593,768	+				+1.2
4,593,768	+				+0.4
4,593,768	+				-1.9
4,593,768	+				+0.1
4,593,768	+				-1.0
4,593,769	-				-0.0
4,593,769	-				-0.7
4,593,769	-				+1.6
4,593,769	-				+0.9
4,593,769	-				+0.7
4,593,769	-				+0.6
4,593,769	-				-1.2
4,593,769	-				+0.6
4,593,769	-				-0.7
4,593,769	-				+2.4
4,593,781	+				+0.5
4,593,781	+				+0.4
4,593,781	+				-1.2
4,593,781	+				-0.1
4,593,782	-				-0.6
4,593,782	-				-1.4
4,593,797	+				-2.0
4,593,872	+				-0.2
4,593,922	+		PFLU_RS20345	0.28	-0.3
4,593,922	+		PFLU_RS20345	0.28	+0.9
4,593,922	+		PFLU_RS20345	0.28	-0.6
4,593,923	-		PFLU_RS20345	0.29	+0.2
4,593,923	-		PFLU_RS20345	0.29	+1.2
4,593,987	+		PFLU_RS20345	0.59	-1.3
4,593,988	-		PFLU_RS20345	0.59	+1.0
4,594,019	+		PFLU_RS20345	0.74	+1.8
4,594,030	+		PFLU_RS20345	0.79	-1.6
4,594,031	-		PFLU_RS20345	0.79	-1.6
4,594,072	+				+1.5
4,594,109	+				+0.5
4,594,109	+				-0.3
4,594,109	+				-1.2
4,594,109	+				-0.7
4,594,109	+				-0.7
4,594,109	+				+2.0
4,594,109	+				-1.8
4,594,109	+				+0.7
4,594,110	-				-2.5
4,594,110	-				-0.2
4,594,110	-				-3.0
4,594,110	-				+0.8
4,594,110	-				-1.0
4,594,110	-				+0.3
4,594,110	-				-0.1
4,594,110	-				+0.3
4,594,110	-				-1.3
4,594,110	-				+1.0
4,594,110	-				+1.2
4,594,110	-				-2.9
4,594,110	-				-0.6
4,594,110	-				-0.3
4,594,110	-				-2.5
4,594,110	-				+0.5
4,594,110	-				+0.1
4,594,208	+				-0.5
4,594,208	+				+0.9
4,594,208	+				+1.4
4,594,208	+				+0.2
4,594,209	-				+0.7
4,594,209	-				-1.1
4,594,259	-		PFLU_RS20350	0.15	+0.0
4,594,304	+		PFLU_RS20350	0.19	+1.5
4,594,304	+		PFLU_RS20350	0.19	-1.6
4,594,304	+		PFLU_RS20350	0.19	-0.3
4,594,304	+		PFLU_RS20350	0.19	-0.4
4,594,304	+		PFLU_RS20350	0.19	-0.0
4,594,345	-		PFLU_RS20350	0.23	-0.4
4,594,349	+		PFLU_RS20350	0.23	-0.2
4,594,349	+		PFLU_RS20350	0.23	+1.7
4,594,349	+		PFLU_RS20350	0.23	-0.5
4,594,373	+		PFLU_RS20350	0.26	-0.2
4,594,373	+		PFLU_RS20350	0.26	-1.6
4,594,373	+		PFLU_RS20350	0.26	+0.5
4,594,373	+		PFLU_RS20350	0.26	+0.2
4,594,373	+		PFLU_RS20350	0.26	-0.6
4,594,373	+		PFLU_RS20350	0.26	+0.6
4,594,373	+		PFLU_RS20350	0.26	+0.0
4,594,373	+		PFLU_RS20350	0.26	-2.6
4,594,373	+		PFLU_RS20350	0.26	+1.1
4,594,374	-		PFLU_RS20350	0.26	-1.9
4,594,374	-		PFLU_RS20350	0.26	+1.1
4,594,374	-		PFLU_RS20350	0.26	+0.2
4,594,374	-		PFLU_RS20350	0.26	-0.9
4,594,374	-		PFLU_RS20350	0.26	-0.5
4,594,374	-		PFLU_RS20350	0.26	+0.9
4,594,374	-		PFLU_RS20350	0.26	-0.3
4,594,386	+		PFLU_RS20350	0.27	+0.5
4,594,387	-		PFLU_RS20350	0.27	-2.7
4,594,456	+		PFLU_RS20350	0.34	-1.5
4,594,456	+		PFLU_RS20350	0.34	+0.0
4,594,456	+		PFLU_RS20350	0.34	+0.7
4,594,456	+		PFLU_RS20350	0.34	-1.2
4,594,456	+		PFLU_RS20350	0.34	+0.3
4,594,456	+		PFLU_RS20350	0.34	-0.1
4,594,457	-		PFLU_RS20350	0.34	-0.2
4,594,457	-		PFLU_RS20350	0.34	+0.1
4,594,457	-		PFLU_RS20350	0.34	-0.7
4,594,457	-		PFLU_RS20350	0.34	-0.9
4,594,457	-		PFLU_RS20350	0.34	+1.0
4,594,457	-		PFLU_RS20350	0.34	-1.3
4,594,484	+		PFLU_RS20350	0.37	-1.7
4,594,484	+		PFLU_RS20350	0.37	-0.7
4,594,484	+		PFLU_RS20350	0.37	+0.6
4,594,484	+		PFLU_RS20350	0.37	-0.6
4,594,484	+		PFLU_RS20350	0.37	+0.6
4,594,485	-		PFLU_RS20350	0.37	+1.0
4,594,485	-		PFLU_RS20350	0.37	-1.7
4,594,485	-		PFLU_RS20350	0.37	+0.4
4,594,485	-		PFLU_RS20350	0.37	+0.8
4,594,485	-		PFLU_RS20350	0.37	+0.7
4,594,485	-		PFLU_RS20350	0.37	-2.0
4,594,485	-		PFLU_RS20350	0.37	+0.7
4,594,485	-		PFLU_RS20350	0.37	+0.2
4,594,485	-		PFLU_RS20350	0.37	+0.4
4,594,485	-		PFLU_RS20350	0.37	-1.0
4,594,563	+		PFLU_RS20350	0.44	-1.7
4,594,563	+		PFLU_RS20350	0.44	+1.2
4,594,563	+		PFLU_RS20350	0.44	-0.7
4,594,566	+		PFLU_RS20350	0.45	-0.4
4,594,566	+		PFLU_RS20350	0.45	-0.8
4,594,566	+		PFLU_RS20350	0.45	-0.3
4,594,566	+		PFLU_RS20350	0.45	-0.4
4,594,567	-		PFLU_RS20350	0.45	+0.9
4,594,567	-		PFLU_RS20350	0.45	-1.1
4,594,727	+		PFLU_RS20350	0.60	-2.3
4,594,727	+		PFLU_RS20350	0.60	+1.2
4,594,727	+		PFLU_RS20350	0.60	-0.7
4,594,728	-		PFLU_RS20350	0.60	-1.3
4,594,728	-		PFLU_RS20350	0.60	+0.6
4,594,728	-		PFLU_RS20350	0.60	-0.7
4,594,728	-		PFLU_RS20350	0.60	+0.1
4,594,728	-		PFLU_RS20350	0.60	-0.2
4,594,728	-		PFLU_RS20350	0.60	-0.3
4,594,788	+		PFLU_RS20350	0.66	+0.2
4,594,788	+		PFLU_RS20350	0.66	-1.3
4,594,788	+		PFLU_RS20350	0.66	+0.2
4,594,788	+		PFLU_RS20350	0.66	-0.9
4,594,788	+		PFLU_RS20350	0.66	+0.4
4,594,788	+		PFLU_RS20350	0.66	+0.5
4,594,789	-		PFLU_RS20350	0.66	-2.6
4,594,789	-		PFLU_RS20350	0.66	-0.6
4,594,789	-		PFLU_RS20350	0.66	-0.5
4,594,789	-		PFLU_RS20350	0.66	-1.7
4,594,789	-		PFLU_RS20350	0.66	-0.1
4,594,817	+		PFLU_RS20350	0.69	-0.4
4,594,818	-		PFLU_RS20350	0.69	-1.7
4,594,818	-		PFLU_RS20350	0.69	-0.6
4,594,818	-		PFLU_RS20350	0.69	-1.6
4,594,818	-		PFLU_RS20350	0.69	+0.0
4,594,856	+		PFLU_RS20350	0.73	-0.5
4,595,136	+				+0.2
4,595,136	+				+0.3
4,595,136	+				-0.5
4,595,136	+				+0.0
4,595,137	-				-0.0
4,595,137	-				-1.8
4,595,137	-				-0.1
4,595,137	-				+0.6
4,595,163	+				+2.3
4,595,163	+				-0.2
4,595,164	-				-0.3
4,595,164	-				-0.2
4,595,164	-				+1.5
4,595,164	-				-1.3
4,595,164	-				+1.8
4,595,164	-				+0.7
4,595,172	-				-1.3
4,595,192	-				-0.3
4,595,199	+				+0.2
4,595,200	-				-0.8
4,595,200	-				+0.7
4,595,311	+		PFLU_RS20355	0.37	+1.7
4,595,311	+		PFLU_RS20355	0.37	+0.6
4,595,584	+				-2.0
4,595,584	+				-0.3
4,595,584	+				-1.7
4,595,584	+				+0.1
4,595,584	+				+0.5
4,595,584	+				+0.2
4,595,584	+				-1.3
4,595,585	-				+0.0
4,595,585	-				+0.5
4,595,585	-				-0.7
4,595,585	-				-0.9
4,595,585	-				+0.0
4,595,585	-				+1.3
4,595,585	-				+0.8
4,595,605	-				+1.0
4,595,722	-		PFLU_RS20360	0.17	-0.0
4,595,794	-		PFLU_RS20360	0.25	-0.1
4,595,794	-		PFLU_RS20360	0.25	-0.6
4,595,939	+		PFLU_RS20360	0.41	-1.1
4,595,940	-		PFLU_RS20360	0.41	-1.5
4,595,954	+		PFLU_RS20360	0.43	-0.9
4,595,954	+		PFLU_RS20360	0.43	+0.1
4,595,954	+		PFLU_RS20360	0.43	-1.1
4,595,954	+		PFLU_RS20360	0.43	-2.0
4,595,954	+		PFLU_RS20360	0.43	-2.4
4,595,954	+		PFLU_RS20360	0.43	-0.7
4,595,955	-		PFLU_RS20360	0.43	+1.0
4,595,955	-		PFLU_RS20360	0.43	-1.6
4,595,955	-		PFLU_RS20360	0.43	-0.1
4,595,955	-		PFLU_RS20360	0.43	-0.7
4,595,955	-		PFLU_RS20360	0.43	+1.0
4,596,038	+		PFLU_RS20360	0.52	-1.5