Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS15395

Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with TAPS
3,450,549	+				-1.0
3,450,549	+				+1.0
3,450,549	+				-0.0
3,450,550	-				+0.0
3,450,550	-				+0.3
3,450,759	+		PFLU_RS15390	0.12	+0.5
3,450,759	+		PFLU_RS15390	0.12	+0.3
3,450,760	-		PFLU_RS15390	0.12	-2.1
3,450,873	+		PFLU_RS15390	0.28	-0.3
3,450,873	+		PFLU_RS15390	0.28	+1.2
3,450,873	+		PFLU_RS15390	0.28	+0.8
3,450,873	+		PFLU_RS15390	0.28	-0.3
3,450,873	+		PFLU_RS15390	0.28	+0.8
3,450,873	+		PFLU_RS15390	0.28	+1.0
3,450,873	+		PFLU_RS15390	0.28	+0.2
3,450,873	+		PFLU_RS15390	0.28	+1.7
3,450,873	+		PFLU_RS15390	0.28	-2.4
3,450,873	+		PFLU_RS15390	0.28	-0.5
3,450,873	+		PFLU_RS15390	0.28	+0.7
3,450,873	+		PFLU_RS15390	0.28	-1.5
3,450,873	+		PFLU_RS15390	0.28	+1.3
3,450,873	+		PFLU_RS15390	0.28	+0.6
3,450,873	+		PFLU_RS15390	0.28	+0.9
3,450,873	+		PFLU_RS15390	0.28	-0.3
3,450,873	+		PFLU_RS15390	0.28	+0.5
3,450,873	+		PFLU_RS15390	0.28	+0.8
3,450,873	+		PFLU_RS15390	0.28	+0.2
3,450,873	+		PFLU_RS15390	0.28	-0.5
3,450,873	+		PFLU_RS15390	0.28	+0.3
3,450,873	+		PFLU_RS15390	0.28	-0.4
3,450,873	+		PFLU_RS15390	0.28	-0.4
3,450,874	-		PFLU_RS15390	0.29	-0.9
3,450,874	-		PFLU_RS15390	0.29	+1.1
3,450,874	-		PFLU_RS15390	0.29	-1.3
3,450,874	-		PFLU_RS15390	0.29	+0.7
3,450,874	-		PFLU_RS15390	0.29	+1.2
3,450,874	-		PFLU_RS15390	0.29	+1.0
3,450,874	-		PFLU_RS15390	0.29	+0.5
3,450,874	-		PFLU_RS15390	0.29	-2.1
3,450,874	-		PFLU_RS15390	0.29	-2.6
3,450,874	-		PFLU_RS15390	0.29	+0.8
3,450,874	-		PFLU_RS15390	0.29	-0.8
3,450,874	-		PFLU_RS15390	0.29	+0.9
3,450,874	-		PFLU_RS15390	0.29	+1.4
3,450,874	-		PFLU_RS15390	0.29	-1.9
3,450,874	-		PFLU_RS15390	0.29	-2.0
3,450,874	-		PFLU_RS15390	0.29	-1.3
3,450,874	-		PFLU_RS15390	0.29	+0.4
3,450,877	+		PFLU_RS15390	0.29	+0.8
3,450,877	+		PFLU_RS15390	0.29	-3.4
3,450,877	+		PFLU_RS15390	0.29	-0.1
3,450,877	+		PFLU_RS15390	0.29	-0.2
3,450,877	+		PFLU_RS15390	0.29	-0.9
3,450,877	+		PFLU_RS15390	0.29	-1.9
3,450,877	+		PFLU_RS15390	0.29	-0.3
3,450,877	+		PFLU_RS15390	0.29	+0.4
3,450,877	+		PFLU_RS15390	0.29	+0.3
3,450,877	+		PFLU_RS15390	0.29	+0.1
3,450,878	-		PFLU_RS15390	0.29	+1.2
3,450,878	-		PFLU_RS15390	0.29	-2.0
3,450,878	-		PFLU_RS15390	0.29	+0.3
3,450,878	-		PFLU_RS15390	0.29	-2.6
3,450,878	-		PFLU_RS15390	0.29	+0.6
3,450,878	-		PFLU_RS15390	0.29	+0.3
3,450,878	-		PFLU_RS15390	0.29	+0.8
3,450,878	-		PFLU_RS15390	0.29	+0.6
3,450,878	-		PFLU_RS15390	0.29	-1.3
3,450,878	-		PFLU_RS15390	0.29	-0.8
3,450,878	-		PFLU_RS15390	0.29	-0.1
3,450,878	-		PFLU_RS15390	0.29	-0.7
3,450,878	-		PFLU_RS15390	0.29	+0.2
3,450,878	-		PFLU_RS15390	0.29	-0.3
3,450,878	-		PFLU_RS15390	0.29	-2.7
3,450,890	+		PFLU_RS15390	0.31	-1.2
3,450,890	+		PFLU_RS15390	0.31	-1.6
3,450,890	+		PFLU_RS15390	0.31	+0.8
3,450,891	-		PFLU_RS15390	0.31	+0.8
3,450,918	-		PFLU_RS15390	0.35	+1.0
3,450,984	+		PFLU_RS15390	0.44	+0.6
3,450,985	-		PFLU_RS15390	0.45	+0.1
3,450,985	-		PFLU_RS15390	0.45	-1.0
3,451,203	+		PFLU_RS15390	0.76	+0.7
3,451,230	+		PFLU_RS15390	0.80	+0.1
3,451,231	-		PFLU_RS15390	0.80	+1.2
3,451,355	-				+0.8
3,451,355	-				+0.4
3,451,374	+				+0.1
3,451,374	+				-0.7
3,451,374	+				-2.7
3,451,375	-				+0.2
3,451,375	-				-0.3
3,451,375	-				-0.8
3,451,376	+				-0.8
3,451,376	+				+0.3
3,451,376	+				-0.8
3,451,377	-				+1.0
3,451,377	-				+0.7
3,451,377	-				-0.1
3,451,377	-				-0.6
3,451,377	-				-1.7
3,451,505	+				-1.7
3,451,505	+				+0.4
3,451,505	+				+0.1
3,451,505	+				+0.8
3,451,505	+				+0.9
3,451,505	+				+0.4
3,451,505	+				+2.5
3,451,505	+				+0.8
3,451,505	+				-0.9
3,451,505	+				-1.2
3,451,505	+				-0.2
3,451,505	+				-0.0
3,451,506	-				-1.5
3,451,506	-				+0.2
3,451,506	-				+0.5
3,451,506	-				+0.2
3,451,506	-				+0.1
3,451,506	-				+0.5
3,451,506	-				-0.7
3,451,506	-				-0.3
3,451,506	-				+1.3
3,451,506	-				+1.3
3,451,506	-				-0.1
3,451,506	-				-0.7
3,451,506	-				+1.8
3,451,507	+				-1.3
3,451,507	+				+0.4
3,451,508	-				-0.6
3,451,524	-				-1.3
3,451,542	+				-0.8
3,451,543	-				-0.2
3,451,606	+				-1.4
3,451,607	-				-2.6
3,451,607	-				+0.6
3,451,607	-				+0.2
3,451,615	+				-2.8
3,451,615	+				+0.2
3,451,615	+				-2.5
3,451,615	+				-0.3
3,451,616	-				-0.3
3,451,616	-				-0.3
3,451,616	-				-0.2
3,451,616	-				-0.4
3,451,616	-				+0.1
3,451,616	-				-1.1
3,451,616	-				-2.6
3,451,616	-				-0.6
3,451,616	-				+0.1
3,451,619	+				-3.0
3,451,619	+				-2.1
3,451,619	+				+1.2
3,451,619	+				-1.1
3,451,620	-				-0.9
3,451,861	+		PFLU_RS15395	0.21	-1.5
3,451,861	+		PFLU_RS15395	0.21	-0.0
3,451,861	+		PFLU_RS15395	0.21	-1.5
3,451,861	+		PFLU_RS15395	0.21	-1.1
3,452,059	+		PFLU_RS15395	0.33	-0.1
3,452,059	+		PFLU_RS15395	0.33	-0.5
3,452,060	-		PFLU_RS15395	0.33	-2.5
3,452,167	+		PFLU_RS15395	0.39	-0.7
3,452,167	+		PFLU_RS15395	0.39	-1.7
3,452,167	+		PFLU_RS15395	0.39	-2.3
3,452,167	+		PFLU_RS15395	0.39	-3.0
3,452,167	+		PFLU_RS15395	0.39	-1.5
3,452,167	+		PFLU_RS15395	0.39	-0.7
3,452,168	-		PFLU_RS15395	0.39	-0.5
3,452,168	-		PFLU_RS15395	0.39	-2.3
3,452,188	+		PFLU_RS15395	0.41	+0.5
3,452,188	+		PFLU_RS15395	0.41	-1.9
3,452,188	+		PFLU_RS15395	0.41	+0.2
3,452,188	+		PFLU_RS15395	0.41	-2.4
3,452,188	+		PFLU_RS15395	0.41	+0.6
3,452,189	-		PFLU_RS15395	0.41	+1.4
3,452,189	-		PFLU_RS15395	0.41	-1.5
3,452,189	-		PFLU_RS15395	0.41	+0.0
3,452,308	+		PFLU_RS15395	0.48	-2.0
3,452,309	-		PFLU_RS15395	0.48	+0.9
3,452,309	-		PFLU_RS15395	0.48	-2.3
3,452,309	-		PFLU_RS15395	0.48	+0.3
3,452,309	-		PFLU_RS15395	0.48	+1.2
3,452,309	-		PFLU_RS15395	0.48	+1.1
3,452,309	-		PFLU_RS15395	0.48	-1.5
3,452,411	-		PFLU_RS15395	0.54	-2.5
3,452,434	+		PFLU_RS15395	0.56	-2.5
3,452,434	+		PFLU_RS15395	0.56	-2.1
3,452,530	+		PFLU_RS15395	0.61	-1.9
3,452,530	+		PFLU_RS15395	0.61	-1.1
3,452,530	+		PFLU_RS15395	0.61	-0.1
3,452,530	+		PFLU_RS15395	0.61	-0.7
3,452,530	+		PFLU_RS15395	0.61	-1.2
3,452,530	+		PFLU_RS15395	0.61	-0.1
3,452,530	+		PFLU_RS15395	0.61	-3.0
3,452,530	+		PFLU_RS15395	0.61	-1.9
3,452,530	+		PFLU_RS15395	0.61	-1.9
3,452,530	+		PFLU_RS15395	0.61	-2.9
3,452,530	+		PFLU_RS15395	0.61	-2.3
3,452,530	+		PFLU_RS15395	0.61	-1.2
3,452,530	+		PFLU_RS15395	0.61	+1.0
3,452,530	+		PFLU_RS15395	0.61	-0.3
3,452,530	+		PFLU_RS15395	0.61	-2.7
3,452,530	+		PFLU_RS15395	0.61	-1.1
3,452,530	+		PFLU_RS15395	0.61	-2.0
3,452,530	+		PFLU_RS15395	0.61	-1.0
3,452,531	-		PFLU_RS15395	0.62	-1.9
3,452,531	-		PFLU_RS15395	0.62	-0.5
3,452,531	-		PFLU_RS15395	0.62	-1.3
3,452,531	-		PFLU_RS15395	0.62	-3.4
3,452,531	-		PFLU_RS15395	0.62	-0.5
3,452,531	-		PFLU_RS15395	0.62	-3.8
3,452,531	-		PFLU_RS15395	0.62	-0.6
3,452,531	-		PFLU_RS15395	0.62	-0.1
3,452,531	-		PFLU_RS15395	0.62	-0.8
3,452,531	-		PFLU_RS15395	0.62	-0.3
3,452,531	-		PFLU_RS15395	0.62	-1.7
3,452,531	-		PFLU_RS15395	0.62	-1.1
3,452,531	-		PFLU_RS15395	0.62	-1.6
3,452,531	-		PFLU_RS15395	0.62	-1.4
3,452,531	-		PFLU_RS15395	0.62	-1.6
3,452,531	-		PFLU_RS15395	0.62	-1.0
3,452,531	-		PFLU_RS15395	0.62	-1.5
3,452,531	-		PFLU_RS15395	0.62	-2.3
3,452,531	-		PFLU_RS15395	0.62	-1.9
3,452,542	+		PFLU_RS15395	0.62	-2.9
3,452,542	+		PFLU_RS15395	0.62	-0.6
3,452,542	+		PFLU_RS15395	0.62	-2.2
3,452,542	+		PFLU_RS15395	0.62	-3.1
3,452,543	-		PFLU_RS15395	0.62	+0.1
3,452,543	-		PFLU_RS15395	0.62	-2.0
3,452,651	+		PFLU_RS15395	0.69	-1.4
3,452,651	+		PFLU_RS15395	0.69	+0.9
3,452,651	+		PFLU_RS15395	0.69	-2.0
3,452,652	-		PFLU_RS15395	0.69	-1.7
3,452,652	-		PFLU_RS15395	0.69	+0.0
3,452,652	-		PFLU_RS15395	0.69	-1.8
3,452,652	-		PFLU_RS15395	0.69	-1.2
3,452,692	+		PFLU_RS15395	0.71	-0.9
3,452,692	+		PFLU_RS15395	0.71	+0.1
3,452,692	+		PFLU_RS15395	0.71	-2.2
3,452,692	+		PFLU_RS15395	0.71	-0.7
3,452,692	+		PFLU_RS15395	0.71	-1.0
3,452,692	+		PFLU_RS15395	0.71	-0.4
3,452,692	+		PFLU_RS15395	0.71	+0.7
3,452,692	+		PFLU_RS15395	0.71	+0.1
3,452,692	+		PFLU_RS15395	0.71	-1.1
3,452,692	+		PFLU_RS15395	0.71	-0.3
3,452,693	-		PFLU_RS15395	0.71	-1.7
3,452,693	-		PFLU_RS15395	0.71	-2.3
3,452,693	-		PFLU_RS15395	0.71	-1.6
3,452,693	-		PFLU_RS15395	0.71	-2.9
3,452,693	-		PFLU_RS15395	0.71	-0.6
3,452,698	+		PFLU_RS15395	0.72	-0.9
3,452,698	+		PFLU_RS15395	0.72	-1.4
3,452,698	+		PFLU_RS15395	0.72	+0.0
3,452,776	+		PFLU_RS15395	0.76	-2.0
3,452,776	+		PFLU_RS15395	0.76	-1.9
3,452,776	+		PFLU_RS15395	0.76	+0.4
3,452,777	-		PFLU_RS15395	0.76	-0.1
3,452,777	-		PFLU_RS15395	0.76	-2.0
3,452,815	+		PFLU_RS15395	0.79	-1.4
3,452,815	+		PFLU_RS15395	0.79	-0.1
3,452,815	+		PFLU_RS15395	0.79	-2.5
3,452,815	+		PFLU_RS15395	0.79	-0.8
3,452,816	-		PFLU_RS15395	0.79	-2.5
3,452,816	-		PFLU_RS15395	0.79	-1.9
3,452,816	-		PFLU_RS15395	0.79	-2.2
3,452,816	-		PFLU_RS15395	0.79	+0.3
3,453,035	+				-1.4
3,453,036	-				-0.9
3,453,036	-				-0.1
3,453,085	+				-0.1
3,453,085	+				+0.4
3,453,085	+				-2.5
3,453,085	+				-0.9
3,453,085	+				+0.5
3,453,085	+				-0.6
3,453,085	+				-2.4
3,453,086	-				-0.8
3,453,086	-				-0.2
3,453,086	-				-2.4
3,453,086	-				-2.7
3,453,086	-				-3.2
3,453,086	-				-2.2
3,453,088	+				-0.9
3,453,088	+				+0.1
3,453,088	+				+0.9
3,453,089	-				+0.7
3,453,089	-				+0.0
3,453,089	-				-0.5
3,453,168	+				+0.7
3,453,168	+				-3.0
3,453,168	+				-0.5
3,453,168	+				-0.8
3,453,168	+				+0.3
3,453,168	+				+0.3
3,453,168	+				+0.1
3,453,168	+				-0.4
3,453,168	+				-2.5
3,453,169	-				-0.4
3,453,169	-				+1.1
3,453,169	-				-1.7
3,453,169	-				+0.3
3,453,169	-				-2.4
3,453,169	-				-0.9
3,453,169	-				-1.5
3,453,169	-				-3.1
3,453,169	-				-0.9
3,453,244	+				-1.0
3,453,244	+				-0.1
3,453,244	+				-1.4
3,453,244	+				-0.5
3,453,244	+				-0.2
3,453,245	-				+0.3
3,453,245	-				-0.1
3,453,245	-				+0.0
3,453,245	-				+1.0
3,453,245	-				+0.6
3,453,246	+				+0.1
3,453,246	+				-0.0
3,453,246	+				+1.4
3,453,246	+				+1.2
3,453,246	+				+0.5
3,453,246	+				+1.1
3,453,247	-				-1.2
3,453,247	-				+1.5
3,453,247	-				+0.5
3,453,457	+		PFLU_RS15400	0.13	+0.4
3,453,457	+		PFLU_RS15400	0.13	+0.2
3,453,457	+		PFLU_RS15400	0.13	+0.8
3,453,457	+		PFLU_RS15400	0.13	+0.0
3,453,458	-		PFLU_RS15400	0.13	-1.6
3,453,458	-		PFLU_RS15400	0.13	+1.0
3,453,509	+		PFLU_RS15400	0.17	+1.2
3,453,571	+		PFLU_RS15400	0.21	-0.8
3,453,571	+		PFLU_RS15400	0.21	-2.1
3,453,571	+		PFLU_RS15400	0.21	+0.4
3,453,571	+		PFLU_RS15400	0.21	-1.4
3,453,621	-		PFLU_RS15400	0.25	+0.4
3,453,621	-		PFLU_RS15400	0.25	+0.8
3,453,621	-		PFLU_RS15400	0.25	-0.5
3,453,655	+		PFLU_RS15400	0.27	+0.3
3,453,656	-		PFLU_RS15400	0.27	+1.3
3,453,719	+		PFLU_RS15400	0.32	-0.1
3,453,719	+		PFLU_RS15400	0.32	+0.6
3,453,720	-		PFLU_RS15400	0.32	+0.1
3,453,720	-		PFLU_RS15400	0.32	+0.2
3,453,720	-		PFLU_RS15400	0.32	-1.4
3,453,726	-		PFLU_RS15400	0.32	-0.2
3,453,726	-		PFLU_RS15400	0.32	+0.5
3,453,746	-		PFLU_RS15400	0.34	+0.2
3,453,799	+		PFLU_RS15400	0.38	-1.1
3,453,841	-		PFLU_RS15400	0.41	+0.4
3,453,866	+		PFLU_RS15400	0.42	+1.0
3,453,866	+		PFLU_RS15400	0.42	-0.5
3,453,946	+		PFLU_RS15400	0.48	-0.9
3,454,123	+		PFLU_RS15400	0.61	+0.1
3,454,124	-		PFLU_RS15400	0.61	+1.4
3,454,124	-		PFLU_RS15400	0.61	+0.5
3,454,124	-		PFLU_RS15400	0.61	+1.6
3,454,124	-		PFLU_RS15400	0.61	-0.1