Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS05625

Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with TAPS
1,267,915	+		PFLU_RS05620	0.31	-1.4
1,267,915	+		PFLU_RS05620	0.31	-0.6
1,267,915	+		PFLU_RS05620	0.31	-2.4
1,267,915	+		PFLU_RS05620	0.31	-0.0
1,267,915	+		PFLU_RS05620	0.31	+0.1
1,267,915	+		PFLU_RS05620	0.31	-0.9
1,267,916	-		PFLU_RS05620	0.31	-0.5
1,267,916	-		PFLU_RS05620	0.31	+0.6
1,267,918	+		PFLU_RS05620	0.31	-1.0
1,267,918	+		PFLU_RS05620	0.31	-2.1
1,267,918	+		PFLU_RS05620	0.31	-1.0
1,267,918	+		PFLU_RS05620	0.31	+0.4
1,267,919	-		PFLU_RS05620	0.32	-0.4
1,267,919	-		PFLU_RS05620	0.32	-1.0
1,267,919	-		PFLU_RS05620	0.32	-1.4
1,267,919	-		PFLU_RS05620	0.32	-2.4
1,268,159	+		PFLU_RS05620	0.50	-1.0
1,268,531	-		PFLU_RS05620	0.78	-1.7
1,268,606	+		PFLU_RS05620	0.83	-2.1
1,268,744	+				-0.2
1,268,744	+				-0.5
1,268,744	+				-1.7
1,268,745	-				-1.7
1,268,745	-				+0.2
1,268,745	-				-0.1
1,268,834	+				-0.8
1,268,834	+				-0.4
1,268,835	-				+1.2
1,268,843	+				+0.3
1,268,843	+				+0.1
1,268,843	+				-1.3
1,268,843	+				-1.2
1,268,843	+				+1.6
1,268,843	+				-2.3
1,268,843	+				-2.0
1,268,843	+				+0.1
1,268,843	+				-2.6
1,268,844	-				-2.3
1,268,844	-				-2.1
1,268,844	-				-1.0
1,268,844	-				+1.0
1,268,844	-				-1.2
1,268,844	-				-1.6
1,268,844	-				-0.7
1,269,084	+		PFLU_RS05625	0.13	+3.2
1,269,085	-		PFLU_RS05625	0.13	+0.3
1,269,085	-		PFLU_RS05625	0.13	+3.3
1,269,269	+		PFLU_RS05625	0.22	+1.0
1,269,270	-		PFLU_RS05625	0.22	+3.9
1,269,270	-		PFLU_RS05625	0.22	+0.5
1,269,460	+		PFLU_RS05625	0.32	+0.2
1,269,460	+		PFLU_RS05625	0.32	-0.1
1,269,460	+		PFLU_RS05625	0.32	-0.4
1,269,460	+		PFLU_RS05625	0.32	-2.8
1,269,460	+		PFLU_RS05625	0.32	-0.2
1,269,460	+		PFLU_RS05625	0.32	-1.2
1,269,461	-		PFLU_RS05625	0.32	+3.7
1,269,499	+		PFLU_RS05625	0.34	-2.5
1,269,499	+		PFLU_RS05625	0.34	+0.2
1,269,499	+		PFLU_RS05625	0.34	-1.7
1,269,722	-		PFLU_RS05625	0.46	+3.1
1,269,879	+		PFLU_RS05625	0.54	-1.0
1,269,879	+		PFLU_RS05625	0.54	-1.9
1,269,879	+		PFLU_RS05625	0.54	-1.7
1,269,879	+		PFLU_RS05625	0.54	+0.0
1,269,879	+		PFLU_RS05625	0.54	-0.4
1,269,879	+		PFLU_RS05625	0.54	-0.6
1,269,880	-		PFLU_RS05625	0.54	+3.9
1,269,996	+		PFLU_RS05625	0.60	-0.6
1,269,997	-		PFLU_RS05625	0.61	+2.1
1,269,999	+		PFLU_RS05625	0.61	-0.7
1,270,000	-		PFLU_RS05625	0.61	+3.0
1,270,000	-		PFLU_RS05625	0.61	+2.2
1,270,050	-		PFLU_RS05625	0.63	+3.7
1,270,221	+		PFLU_RS05625	0.72	-1.4
1,270,221	+		PFLU_RS05625	0.72	-2.2
1,270,221	+		PFLU_RS05625	0.72	+0.3
1,270,222	-		PFLU_RS05625	0.72	+2.0
1,270,222	-		PFLU_RS05625	0.72	+4.2
1,270,222	-		PFLU_RS05625	0.72	+2.2
1,270,243	+		PFLU_RS05625	0.73	-0.9
1,270,258	-		PFLU_RS05625	0.74	+2.0
1,270,258	-		PFLU_RS05625	0.74	+3.2
1,270,258	-		PFLU_RS05625	0.74	+4.4
1,270,258	-		PFLU_RS05625	0.74	+1.5
1,270,296	+		PFLU_RS05625	0.76	-0.5
1,270,297	-		PFLU_RS05625	0.76	-0.3
1,270,297	-		PFLU_RS05625	0.76	+4.9
1,270,326	+		PFLU_RS05625	0.78	+0.2
1,270,326	+		PFLU_RS05625	0.78	-0.7
1,270,326	+		PFLU_RS05625	0.78	+0.5
1,270,327	-		PFLU_RS05625	0.78	+1.6
1,270,327	-		PFLU_RS05625	0.78	+3.9
1,270,327	-		PFLU_RS05625	0.78	+4.8
1,270,327	-		PFLU_RS05625	0.78	+2.6
1,270,327	-		PFLU_RS05625	0.78	+0.1
1,270,386	+		PFLU_RS05625	0.81	-0.4
1,270,386	+		PFLU_RS05625	0.81	-1.5
1,270,386	+		PFLU_RS05625	0.81	+0.6
1,270,386	+		PFLU_RS05625	0.81	-0.7
1,270,386	+		PFLU_RS05625	0.81	-0.3
1,270,386	+		PFLU_RS05625	0.81	-2.0
1,270,386	+		PFLU_RS05625	0.81	+1.6
1,270,386	+		PFLU_RS05625	0.81	+1.4
1,270,386	+		PFLU_RS05625	0.81	-3.1
1,270,386	+		PFLU_RS05625	0.81	+0.2
1,270,387	-		PFLU_RS05625	0.81	+2.4
1,270,387	-		PFLU_RS05625	0.81	+3.3
1,270,387	-		PFLU_RS05625	0.81	+3.1
1,270,387	-		PFLU_RS05625	0.81	+3.2
1,270,387	-		PFLU_RS05625	0.81	+3.9
1,270,387	-		PFLU_RS05625	0.81	+3.7
1,270,387	-		PFLU_RS05625	0.81	+4.6
1,270,387	-		PFLU_RS05625	0.81	+2.8
1,270,387	-		PFLU_RS05625	0.81	+4.1
1,270,515	+		PFLU_RS05625	0.88	-1.7
1,270,515	+		PFLU_RS05625	0.88	-0.9
1,270,515	+		PFLU_RS05625	0.88	+0.0
1,270,515	+		PFLU_RS05625	0.88	-0.1
1,270,515	+		PFLU_RS05625	0.88	-0.1
1,270,516	-		PFLU_RS05625	0.88	-0.7
1,270,516	-		PFLU_RS05625	0.88	+4.2
1,270,516	-		PFLU_RS05625	0.88	+0.6
1,270,516	-		PFLU_RS05625	0.88	+2.9
1,270,516	-		PFLU_RS05625	0.88	+4.3
1,270,516	-		PFLU_RS05625	0.88	+3.1
1,270,516	-		PFLU_RS05625	0.88	+3.4
1,270,521	+		PFLU_RS05625	0.88	-1.7
1,270,521	+		PFLU_RS05625	0.88	+0.7
1,270,521	+		PFLU_RS05625	0.88	+0.2
1,270,521	+		PFLU_RS05625	0.88	-0.7
1,270,521	+		PFLU_RS05625	0.88	-1.6
1,270,521	+		PFLU_RS05625	0.88	-0.7
1,270,522	-		PFLU_RS05625	0.88	+0.5
1,270,522	-		PFLU_RS05625	0.88	-1.5
1,270,522	-		PFLU_RS05625	0.88	+1.7
1,270,522	-		PFLU_RS05625	0.88	-0.4
1,270,522	-		PFLU_RS05625	0.88	-1.5
1,270,522	-		PFLU_RS05625	0.88	-0.6
1,270,522	-		PFLU_RS05625	0.88	-0.1
1,270,522	-		PFLU_RS05625	0.88	+4.2
1,270,522	-		PFLU_RS05625	0.88	+3.5
1,270,602	+				-1.5
1,270,602	+				-1.8
1,270,602	+				-0.1
1,270,603	-				+2.5
1,270,603	-				+0.2
1,270,603	-				+1.1
1,270,606	-				-0.7
1,270,606	-				+2.0
1,270,606	-				+3.1
1,270,606	-				+2.7
1,270,627	+				-1.6
1,270,627	+				+0.5
1,270,628	-				-0.4
1,270,628	-				+0.5
1,270,629	+				+0.8
1,270,629	+				-2.0
1,270,630	-				+0.2
1,270,630	-				+0.4
1,270,630	-				+0.3
1,270,630	-				+2.0
1,270,768	+		PFLU_RS31420	0.11	-2.1
1,270,768	+		PFLU_RS31420	0.11	+0.0
1,270,768	+		PFLU_RS31420	0.11	-0.1
1,270,768	+		PFLU_RS31420	0.11	-0.7
1,270,769	-		PFLU_RS31420	0.11	+0.1
1,270,769	-		PFLU_RS31420	0.11	+0.7
1,270,781	-		PFLU_RS31420	0.17	+0.2
1,270,781	-		PFLU_RS31420	0.17	-0.0
1,270,781	-		PFLU_RS31420	0.17	-1.2
1,270,842	+		PFLU_RS31420	0.48	-0.1
1,270,967	+				-0.5
1,270,968	-				-2.4
1,270,968	-				-1.4
1,270,968	-				+0.8
1,270,980	+				+0.2
1,270,980	+				+2.2
1,270,980	+				-1.8
1,270,980	+				+0.5
1,270,980	+				-0.7
1,270,980	+				+1.6
1,270,980	+				-1.2
1,270,981	-				-0.8
1,270,981	-				-2.2
1,270,981	-				-0.8
1,270,981	-				-0.7
1,270,981	-				+0.5
1,271,596	+		PFLU_RS05630	0.84	+0.9
1,271,597	-		PFLU_RS05630	0.84	-0.9
1,271,597	-		PFLU_RS05630	0.84	+0.7
1,271,597	-		PFLU_RS05630	0.84	-2.2
1,271,683	-				+1.3
1,271,704	+				-0.3
1,271,704	+				-2.2
1,271,705	-				-1.8
1,271,713	+				+1.5