Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS04655

Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with TAPS
1,039,242	-		PFLU_RS04650	0.76	-0.9
1,039,242	-		PFLU_RS04650	0.76	+0.8
1,039,242	-		PFLU_RS04650	0.76	+0.0
1,039,260	+		PFLU_RS04650	0.77	-0.1
1,039,261	-		PFLU_RS04650	0.77	+0.6
1,039,261	-		PFLU_RS04650	0.77	-0.9
1,039,390	+		PFLU_RS04650	0.85	-2.0
1,039,390	+		PFLU_RS04650	0.85	+0.1
1,039,390	+		PFLU_RS04650	0.85	-2.2
1,039,390	+		PFLU_RS04650	0.85	-2.8
1,039,390	+		PFLU_RS04650	0.85	+0.8
1,039,390	+		PFLU_RS04650	0.85	-1.6
1,039,390	+		PFLU_RS04650	0.85	-2.5
1,039,390	+		PFLU_RS04650	0.85	+0.4
1,039,390	+		PFLU_RS04650	0.85	-1.1
1,039,391	-		PFLU_RS04650	0.85	+1.0
1,039,391	-		PFLU_RS04650	0.85	-0.4
1,039,391	-		PFLU_RS04650	0.85	-1.5
1,039,391	-		PFLU_RS04650	0.85	-1.7
1,039,391	-		PFLU_RS04650	0.85	+1.5
1,039,435	+		PFLU_RS04650	0.87	+1.4
1,039,435	+		PFLU_RS04650	0.87	+0.5
1,039,435	+		PFLU_RS04650	0.87	-0.6
1,039,435	+		PFLU_RS04650	0.87	+1.4
1,039,435	+		PFLU_RS04650	0.87	-0.2
1,039,435	+		PFLU_RS04650	0.87	-1.6
1,039,436	-		PFLU_RS04650	0.87	-1.7
1,039,436	-		PFLU_RS04650	0.87	+1.7
1,039,436	-		PFLU_RS04650	0.87	-0.3
1,039,436	-		PFLU_RS04650	0.87	+0.6
1,039,436	-		PFLU_RS04650	0.87	+0.2
1,039,436	-		PFLU_RS04650	0.87	+1.1
1,039,436	-		PFLU_RS04650	0.87	-1.4
1,039,436	-		PFLU_RS04650	0.87	-1.8
1,039,436	-		PFLU_RS04650	0.87	+0.8
1,039,436	-		PFLU_RS04650	0.87	+0.4
1,039,436	-		PFLU_RS04650	0.87	+1.1
1,039,436	-		PFLU_RS04650	0.87	+0.5
1,039,436	-		PFLU_RS04650	0.87	+2.0
1,039,469	+		PFLU_RS04650	0.89	-2.3
1,039,470	-		PFLU_RS04650	0.89	-0.7
1,039,470	-		PFLU_RS04650	0.89	-0.8
1,039,500	+				-0.1
1,039,500	+				-0.2
1,039,501	-				-2.4
1,039,501	-				-1.9
1,039,501	-				-0.2
1,039,501	-				+0.2
1,039,501	-				+0.9
1,039,528	-				+0.3
1,039,621	+				-2.8
1,039,670	+				-1.6
1,039,670	+				+0.2
1,039,670	+				-1.4
1,039,670	+				-2.1
1,039,670	+				-0.3
1,039,670	+				+1.0
1,039,670	+				-0.7
1,039,670	+				-1.5
1,039,670	+				-0.5
1,039,670	+				-0.9
1,039,670	+				-0.8
1,039,670	+				-2.2
1,039,670	+				+0.1
1,039,670	+				+2.0
1,039,670	+				-0.9
1,039,670	+				-0.3
1,039,670	+				-0.9
1,039,670	+				-0.9
1,039,670	+				-0.7
1,039,670	+				+0.2
1,039,670	+				-0.4
1,039,670	+				+0.8
1,039,670	+				+0.5
1,039,670	+				+0.2
1,039,670	+				-1.8
1,039,670	+				-1.6
1,039,670	+				-1.5
1,039,670	+				+0.1
1,039,670	+				-1.2
1,039,670	+				-1.1
1,039,670	+				+0.1
1,039,670	+				-0.1
1,039,670	+				+0.4
1,039,670	+				-0.9
1,039,670	+				-1.3
1,039,671	-				-0.3
1,039,671	-				+0.4
1,039,671	-				+0.2
1,039,671	-				+1.0
1,039,671	-				-0.3
1,039,671	-				-1.7
1,039,671	-				-2.5
1,039,671	-				-1.5
1,039,671	-				+0.4
1,039,671	-				-0.0
1,039,671	-				-0.0
1,039,671	-				-2.2
1,039,671	-				+0.9
1,039,671	-				-2.8
1,039,671	-				+1.3
1,039,671	-				+0.9
1,039,671	-				-0.8
1,039,671	-				+0.3
1,039,671	-				+0.8
1,039,671	-				+0.4
1,039,671	-				+0.6
1,039,671	-				+0.5
1,039,671	-				-1.2
1,039,671	-				-0.6
1,039,671	-				+0.5
1,039,671	-				-0.5
1,039,671	-				+0.1
1,039,671	-				-0.7
1,039,671	-				-1.0
1,039,671	-				-0.1
1,039,671	-				-1.0
1,039,671	-				-1.9
1,039,671	-				+0.5
1,039,683	+				+0.1
1,039,708	+				+1.0
1,039,708	+				-0.1
1,039,736	+				-0.1
1,039,736	+				+0.1
1,039,736	+				+0.9
1,039,736	+				+1.1
1,039,736	+				+0.7
1,039,737	-				-0.9
1,039,737	-				-0.3
1,039,758	+				-1.7
1,039,758	+				-1.5
1,039,758	+				-0.6
1,039,758	+				-1.2
1,039,759	-				-0.4
1,039,759	-				+0.5
1,039,759	-				+0.6
1,039,759	-				-0.4
1,039,777	+				+0.6
1,039,777	+				-3.0
1,039,778	-				-1.5
1,039,778	-				-3.4
1,039,778	-				-1.7
1,039,819	+				-0.6
1,039,819	+				-0.5
1,039,820	-				+0.1
1,039,820	-				+0.3
1,039,820	-				+1.2
1,039,820	-				-0.6
1,039,835	-				+1.5
1,039,835	-				+1.5
1,039,841	+				+0.3
1,039,842	-				-0.5
1,039,842	-				-1.0
1,039,973	+		PFLU_RS04655	0.11	-1.8
1,039,973	+		PFLU_RS04655	0.11	-2.0
1,039,974	-		PFLU_RS04655	0.11	-1.2
1,040,108	+		PFLU_RS04655	0.26	-1.3
1,040,216	+		PFLU_RS04655	0.39	-1.4
1,040,216	+		PFLU_RS04655	0.39	-1.9
1,040,216	+		PFLU_RS04655	0.39	-2.3
1,040,216	+		PFLU_RS04655	0.39	-2.5
1,040,217	-		PFLU_RS04655	0.39	+1.9
1,040,224	+		PFLU_RS04655	0.40	-0.7
1,040,224	+		PFLU_RS04655	0.40	-1.0
1,040,224	+		PFLU_RS04655	0.40	-2.7
1,040,224	+		PFLU_RS04655	0.40	-0.9
1,040,224	+		PFLU_RS04655	0.40	-0.4
1,040,224	+		PFLU_RS04655	0.40	-2.9
1,040,224	+		PFLU_RS04655	0.40	-2.3
1,040,224	+		PFLU_RS04655	0.40	-2.2
1,040,224	+		PFLU_RS04655	0.40	-1.6
1,040,224	+		PFLU_RS04655	0.40	-1.0
1,040,224	+		PFLU_RS04655	0.40	-1.7
1,040,225	-		PFLU_RS04655	0.40	+0.2
1,040,225	-		PFLU_RS04655	0.40	-1.0
1,040,225	-		PFLU_RS04655	0.40	-1.4
1,040,225	-		PFLU_RS04655	0.40	+0.4
1,040,225	-		PFLU_RS04655	0.40	-2.1
1,040,225	-		PFLU_RS04655	0.40	-1.4
1,040,225	-		PFLU_RS04655	0.40	-0.9
1,040,225	-		PFLU_RS04655	0.40	+0.8
1,040,225	-		PFLU_RS04655	0.40	-1.9
1,040,225	-		PFLU_RS04655	0.40	-1.1
1,040,225	-		PFLU_RS04655	0.40	-2.6
1,040,225	-		PFLU_RS04655	0.40	-1.4
1,040,294	+		PFLU_RS04655	0.48	-0.9
1,040,294	+		PFLU_RS04655	0.48	-1.1
1,040,295	-		PFLU_RS04655	0.48	-1.8
1,040,295	-		PFLU_RS04655	0.48	-1.8
1,040,382	+		PFLU_RS04655	0.58	-2.0
1,040,383	-		PFLU_RS04655	0.58	+0.6
1,040,612	+		PFLU_RS04655	0.84	+0.9
1,040,715	+				-0.5
1,040,715	+				-3.6
1,040,715	+				-1.0
1,040,715	+				-0.3
1,040,716	-				-0.7
1,040,716	-				-1.6
1,040,716	-				-2.1
1,040,748	+				+1.8
1,040,748	+				-1.2
1,040,749	-				-0.7
1,040,749	-				-0.6
1,040,798	-				+1.0
1,040,803	+				-0.5
1,040,803	+				-2.5
1,040,803	+				-1.1
1,040,803	+				-2.4
1,040,804	-				+0.6
1,040,806	+				-0.1
1,040,806	+				+0.1
1,040,806	+				-0.6
1,040,806	+				-0.4
1,040,806	+				-1.5
1,040,806	+				+0.4
1,040,806	+				-2.5
1,040,806	+				-0.8
1,040,807	-				-0.2
1,040,807	-				+0.0
1,040,807	-				-0.2
1,040,807	-				-2.1
1,040,807	-				-1.3
1,041,238	+				+0.1
1,041,239	-				+0.8
1,041,239	-				+0.4
1,041,241	+				-0.4
1,041,242	-				+1.1
1,041,288	+				+1.1
1,041,289	-				+1.1
1,041,289	-				+0.1
1,041,315	-				+1.7
1,041,320	-				+0.6
1,041,331	-				+1.0
1,041,336	-				-0.4
1,041,351	-				+0.1
1,041,351	-				-0.5
1,041,351	-				-0.6
1,041,475	+				+0.9
1,041,475	+				-0.7
1,041,475	+				+0.2
1,041,475	+				-1.5
1,041,475	+				+0.8
1,041,475	+				-0.1
1,041,475	+				+0.1
1,041,475	+				+3.7
1,041,475	+				-1.3
1,041,475	+				-0.5
1,041,475	+				-2.7
1,041,475	+				+1.9
1,041,475	+				-1.1
1,041,475	+				-0.4
1,041,475	+				+1.3
1,041,477	+				+0.5
1,041,477	+				-0.9
1,041,477	+				+0.8
1,041,477	+				-0.1
1,041,477	+				-1.5
1,041,477	+				+1.3
1,041,477	+				-0.7
1,041,477	+				-1.9
1,041,477	+				-0.7
1,041,477	+				+1.1
1,041,477	+				-1.1
1,041,525	+				-0.9
1,041,525	+				+1.2
1,041,569	+				-1.4
1,041,569	+				+0.3
1,041,569	+				+0.9
1,041,569	+				+0.4
1,041,688	+		PFLU_RS04660	0.29	+0.6
1,041,688	+		PFLU_RS04660	0.29	+2.3
1,041,688	+		PFLU_RS04660	0.29	-1.9
1,041,688	+		PFLU_RS04660	0.29	+0.6
1,041,688	+		PFLU_RS04660	0.29	-0.7
1,041,688	+		PFLU_RS04660	0.29	+1.4
1,041,688	+		PFLU_RS04660	0.29	+1.4
1,041,688	+		PFLU_RS04660	0.29	+0.1
1,041,688	+		PFLU_RS04660	0.29	+0.0
1,041,688	+		PFLU_RS04660	0.29	+1.4
1,041,688	+		PFLU_RS04660	0.29	-0.8
1,041,688	+		PFLU_RS04660	0.29	-0.5
1,041,688	+		PFLU_RS04660	0.29	+1.2
1,041,688	+		PFLU_RS04660	0.29	+0.9
1,041,688	+		PFLU_RS04660	0.29	+1.7
1,041,688	+		PFLU_RS04660	0.29	-0.4
1,041,688	+		PFLU_RS04660	0.29	+0.3
1,041,696	+		PFLU_RS04660	0.31	-1.7