Experiment: D-Leucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0338 and BT0339 are separated by 121 nucleotides BT0339 and BT0340 are separated by 9 nucleotides
BT0338: BT0338 - conserved hypothetical protein (NCBI ptt file), at 403,243 to 405,093
BT0338
BT0339: BT0339 - alpha-glucosidase (NCBI ptt file), at 405,215 to 407,461
BT0339
BT0340: BT0340 - trimethylamine corrinoid protein 2 (TCP 2) (NCBI ptt file), at 407,471 to 409,279
BT0340
Position (kb) 405
406
407
408 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 404.221 kb on - strand, within BT0338 at 404.292 kb on + strand, within BT0338 at 404.370 kb on - strand, within BT0338 at 404.375 kb on + strand, within BT0338 at 404.503 kb on - strand, within BT0338 at 404.582 kb on + strand, within BT0338 at 404.595 kb on + strand, within BT0338 at 404.665 kb on + strand, within BT0338 at 404.834 kb on - strand, within BT0338 at 404.835 kb on + strand, within BT0338 at 404.927 kb on - strand at 405.096 kb on - strand at 405.180 kb on + strand at 405.202 kb on + strand at 405.205 kb on + strand at 405.268 kb on - strand at 405.298 kb on + strand at 405.299 kb on - strand at 405.332 kb on - strand at 405.332 kb on - strand at 405.366 kb on + strand at 405.376 kb on + strand at 405.376 kb on + strand at 405.376 kb on + strand at 405.376 kb on + strand at 405.377 kb on - strand at 405.412 kb on + strand at 405.433 kb on + strand at 405.677 kb on + strand, within BT0339 at 405.906 kb on + strand, within BT0339 at 405.934 kb on - strand, within BT0339 at 405.971 kb on + strand, within BT0339 at 406.176 kb on - strand, within BT0339 at 406.194 kb on + strand, within BT0339 at 406.431 kb on - strand, within BT0339 at 406.433 kb on - strand, within BT0339 at 406.511 kb on - strand, within BT0339 at 406.659 kb on - strand, within BT0339 at 406.883 kb on - strand, within BT0339 at 407.070 kb on + strand, within BT0339 at 407.309 kb on + strand at 407.309 kb on + strand at 407.310 kb on - strand at 407.428 kb on - strand at 407.434 kb on + strand at 407.438 kb on + strand at 407.514 kb on - strand at 407.538 kb on + strand at 407.552 kb on - strand at 407.672 kb on + strand, within BT0340 at 407.673 kb on - strand, within BT0340 at 407.673 kb on - strand, within BT0340 at 407.794 kb on - strand, within BT0340 at 407.813 kb on - strand, within BT0340 at 407.881 kb on + strand, within BT0340 at 407.963 kb on - strand, within BT0340 at 407.963 kb on - strand, within BT0340 at 407.963 kb on - strand, within BT0340 at 408.039 kb on - strand, within BT0340 at 408.177 kb on - strand, within BT0340 at 408.236 kb on + strand, within BT0340 at 408.237 kb on - strand, within BT0340
Per-strain Table
Position Strand Gene LocusTag Fraction D-Leucrose (C) remove 404,221 - BT0338 0.53 -1.7 404,292 + BT0338 0.57 -0.2 404,370 - BT0338 0.61 +0.5 404,375 + BT0338 0.61 -0.1 404,503 - BT0338 0.68 -0.3 404,582 + BT0338 0.72 -1.1 404,595 + BT0338 0.73 +0.1 404,665 + BT0338 0.77 +0.9 404,834 - BT0338 0.86 -1.1 404,835 + BT0338 0.86 +1.3 404,927 - -1.9 405,096 - -2.2 405,180 + -1.4 405,202 + -0.1 405,205 + -1.1 405,268 - -1.4 405,298 + -0.1 405,299 - +0.0 405,332 - -0.5 405,332 - +0.7 405,366 + -0.1 405,376 + -1.4 405,376 + -2.1 405,376 + +3.2 405,376 + -3.4 405,377 - -0.7 405,412 + +0.9 405,433 + -0.7 405,677 + BT0339 0.21 +0.6 405,906 + BT0339 0.31 +0.9 405,934 - BT0339 0.32 -1.1 405,971 + BT0339 0.34 -1.8 406,176 - BT0339 0.43 -0.7 406,194 + BT0339 0.44 +0.9 406,431 - BT0339 0.54 -0.4 406,433 - BT0339 0.54 -0.3 406,511 - BT0339 0.58 +0.5 406,659 - BT0339 0.64 -0.2 406,883 - BT0339 0.74 -1.3 407,070 + BT0339 0.83 +0.9 407,309 + -1.1 407,309 + -0.1 407,310 - +0.9 407,428 - -2.0 407,434 + +0.9 407,438 + -1.1 407,514 - +1.5 407,538 + -1.6 407,552 - +0.6 407,672 + BT0340 0.11 -2.1 407,673 - BT0340 0.11 -0.1 407,673 - BT0340 0.11 -2.1 407,794 - BT0340 0.18 +0.6 407,813 - BT0340 0.19 -1.4 407,881 + BT0340 0.23 +0.1 407,963 - BT0340 0.27 -0.1 407,963 - BT0340 0.27 +0.6 407,963 - BT0340 0.27 +0.1 408,039 - BT0340 0.31 -1.9 408,177 - BT0340 0.39 -0.1 408,236 + BT0340 0.42 +0.5 408,237 - BT0340 0.42 -3.1
Or see this region's nucleotide sequence