Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS22390

Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with TAPS
5,034,111	+		PFLU_RS22385	0.29	+0.9
5,034,140	-		PFLU_RS22385	0.32	-0.5
5,034,140	-		PFLU_RS22385	0.32	+0.5
5,034,215	+		PFLU_RS22385	0.37	+1.0
5,034,215	+		PFLU_RS22385	0.37	-0.3
5,034,216	-		PFLU_RS22385	0.37	+1.3
5,034,216	-		PFLU_RS22385	0.37	+0.9
5,034,312	+		PFLU_RS22385	0.44	-0.1
5,034,312	+		PFLU_RS22385	0.44	+1.4
5,034,312	+		PFLU_RS22385	0.44	+0.6
5,034,312	+		PFLU_RS22385	0.44	+1.6
5,034,312	+		PFLU_RS22385	0.44	+0.4
5,034,312	+		PFLU_RS22385	0.44	+2.1
5,034,312	+		PFLU_RS22385	0.44	+0.6
5,034,312	+		PFLU_RS22385	0.44	-0.0
5,034,313	-		PFLU_RS22385	0.44	+1.6
5,034,313	-		PFLU_RS22385	0.44	+1.2
5,034,313	-		PFLU_RS22385	0.44	+1.1
5,034,313	-		PFLU_RS22385	0.44	-0.2
5,034,313	-		PFLU_RS22385	0.44	+0.4
5,034,313	-		PFLU_RS22385	0.44	-0.7
5,034,313	-		PFLU_RS22385	0.44	+0.3
5,034,313	-		PFLU_RS22385	0.44	+1.6
5,034,313	-		PFLU_RS22385	0.44	+1.4
5,034,313	-		PFLU_RS22385	0.44	-0.2
5,034,313	-		PFLU_RS22385	0.44	+0.3
5,034,313	-		PFLU_RS22385	0.44	+0.2
5,034,313	-		PFLU_RS22385	0.44	+0.4
5,034,313	-		PFLU_RS22385	0.44	+0.3
5,034,313	-		PFLU_RS22385	0.44	+0.2
5,034,349	+		PFLU_RS22385	0.47	+0.8
5,034,350	-		PFLU_RS22385	0.47	+1.6
5,034,350	-		PFLU_RS22385	0.47	+1.0
5,034,392	+		PFLU_RS22385	0.50	+1.2
5,034,393	-		PFLU_RS22385	0.50	+0.8
5,034,439	+		PFLU_RS22385	0.53	+1.2
5,034,439	+		PFLU_RS22385	0.53	+0.3
5,034,439	+		PFLU_RS22385	0.53	+0.1
5,034,439	+		PFLU_RS22385	0.53	+0.0
5,034,439	+		PFLU_RS22385	0.53	+0.9
5,034,439	+		PFLU_RS22385	0.53	+0.2
5,034,440	-		PFLU_RS22385	0.53	-2.0
5,034,440	-		PFLU_RS22385	0.53	+2.1
5,034,440	-		PFLU_RS22385	0.53	+1.0
5,034,440	-		PFLU_RS22385	0.53	+2.1
5,034,440	-		PFLU_RS22385	0.53	+1.1
5,034,565	+		PFLU_RS22385	0.62	+0.5
5,034,565	+		PFLU_RS22385	0.62	+0.8
5,034,565	+		PFLU_RS22385	0.62	+0.6
5,034,565	+		PFLU_RS22385	0.62	-0.4
5,034,566	-		PFLU_RS22385	0.62	-1.0
5,034,566	-		PFLU_RS22385	0.62	+1.1
5,034,652	+		PFLU_RS22385	0.69	-0.0
5,034,652	+		PFLU_RS22385	0.69	-0.9
5,034,652	+		PFLU_RS22385	0.69	+0.1
5,034,652	+		PFLU_RS22385	0.69	+1.3
5,034,653	-		PFLU_RS22385	0.69	+0.1
5,034,722	-		PFLU_RS22385	0.74	-0.2
5,034,722	-		PFLU_RS22385	0.74	+0.7
5,034,910	+		PFLU_RS22385	0.87	+1.7
5,034,910	+		PFLU_RS22385	0.87	+1.0
5,034,911	-		PFLU_RS22385	0.87	+1.5
5,034,989	+				+1.1
5,034,990	-				+1.3
5,034,990	-				-1.6
5,035,042	+				-0.0
5,035,043	-				+1.5
5,035,084	+				+0.2
5,035,084	+				+0.7
5,035,084	+				+2.5
5,035,084	+				-2.6
5,035,084	+				+1.1
5,035,084	+				+1.3
5,035,084	+				+0.5
5,035,084	+				+1.8
5,035,084	+				+0.6
5,035,084	+				+0.3
5,035,084	+				-1.2
5,035,084	+				+0.6
5,035,084	+				+0.1
5,035,085	-				-1.7
5,035,085	-				-0.7
5,035,085	-				+2.0
5,035,085	-				+0.6
5,035,085	-				-0.9
5,035,085	-				+0.7
5,035,088	+				+0.1
5,035,088	+				-2.0
5,035,088	+				+0.7
5,035,088	+				-1.0
5,035,088	+				+0.9
5,035,089	-				+0.9
5,035,089	-				-0.5
5,035,089	-				+2.2
5,035,089	-				+0.1
5,035,131	+				+0.5
5,035,131	+				-0.6
5,035,132	-				-0.7
5,035,132	-				-0.2
5,035,246	-		PFLU_RS22390	0.34	+0.8
5,035,354	-		PFLU_RS22390	0.57	+0.7
5,035,413	+		PFLU_RS22390	0.70	-1.0
5,035,413	+		PFLU_RS22390	0.70	-1.3
5,035,414	-		PFLU_RS22390	0.70	-1.3
5,035,449	+		PFLU_RS22390	0.77	+0.5
5,035,450	-		PFLU_RS22390	0.78	+0.5
5,035,535	+				-1.3
5,035,535	+				+0.2
5,035,535	+				+1.4
5,035,535	+				+0.3
5,035,536	-				+0.1
5,035,536	-				-0.1
5,035,536	-				-0.8
5,035,536	-				+0.9
5,035,536	-				+0.7
5,035,536	-				+1.1
5,035,543	+				-2.3
5,035,543	+				+0.8
5,035,543	+				+1.5
5,035,543	+				+1.6
5,035,544	-				+1.8
5,035,544	-				+0.5
5,035,544	-				+1.2
5,035,544	-				-0.3
5,035,545	+				-0.4
5,035,545	+				+0.8
5,035,546	-				+0.5
5,035,546	-				-0.1
5,035,570	+				-1.7
5,035,570	+				+0.0
5,035,571	-				+0.2
5,035,571	-				+0.3
5,035,571	-				+1.3
5,035,574	+				-1.1
5,035,574	+				-1.5
5,035,574	+				+0.9
5,035,574	+				-1.4
5,035,574	+				+0.0
5,035,574	+				+0.6
5,035,574	+				-0.1
5,035,574	+				+0.8
5,035,574	+				-0.2
5,035,574	+				+0.9
5,035,574	+				-1.6
5,035,574	+				-0.5
5,035,574	+				+0.5
5,035,574	+				+1.0
5,035,574	+				-1.3
5,035,574	+				-0.1
5,035,574	+				-0.4
5,035,574	+				+1.7
5,035,575	-				-0.1
5,035,575	-				-0.8
5,035,575	-				+0.5
5,035,575	-				-0.7
5,035,575	-				+0.8
5,035,575	-				-1.2
5,035,575	-				+1.3
5,035,575	-				+0.4
5,035,575	-				-1.0
5,035,575	-				+0.6
5,035,575	-				-1.0
5,035,575	-				-0.6
5,035,575	-				-0.3
5,035,575	-				+0.1
5,035,575	-				+0.5
5,035,575	-				-0.7
5,035,575	-				+1.2
5,035,575	-				+1.2
5,035,575	-				-0.6
5,035,575	-				+0.2
5,035,578	+				-1.2
5,035,578	+				-1.3
5,035,578	+				-1.5
5,035,578	+				+0.5
5,035,578	+				-0.8
5,035,578	+				+2.4
5,035,578	+				+0.8
5,035,579	-				-1.9
5,035,579	-				+0.2
5,035,579	-				+0.4
5,035,579	-				-0.8
5,035,579	-				+0.1
5,035,579	-				-0.6
5,035,579	-				-0.7
5,035,579	-				+1.0
5,035,579	-				+0.7
5,035,579	-				-2.2
5,035,579	-				-2.2
5,035,579	-				+1.4
5,035,579	-				-0.3
5,035,579	-				+0.3
5,035,579	-				-1.1
5,035,579	-				+1.2
5,035,579	-				-1.0
5,035,579	-				+2.4
5,035,579	-				+0.1
5,035,589	+				-0.0
5,035,601	+				-0.1
5,035,613	+				+0.2
5,035,613	+				+0.7
5,035,614	-				-2.2
5,035,615	+				-1.1
5,035,615	+				-0.0
5,035,615	+				-0.7
5,035,616	-				-0.0
5,035,616	-				-0.1
5,035,616	-				-2.5
5,035,616	-				+1.9
5,035,616	-				-0.1
5,035,634	+				-0.8
5,035,634	+				+1.8
5,035,635	-				+0.9
5,035,671	+				+2.0
5,035,672	-				+1.7
5,035,672	-				-1.2
5,035,672	-				-1.8
5,035,678	+				+1.1
5,035,678	+				-0.0
5,035,678	+				+0.1
5,035,678	+				+0.2
5,035,678	+				-0.5
5,035,678	+				-0.0
5,035,678	+				+0.8
5,035,678	+				+0.0
5,035,678	+				+1.1
5,035,679	-				-2.1
5,035,679	-				-1.5
5,035,679	-				-0.9
5,035,679	-				+0.8
5,035,679	-				+1.2
5,035,679	-				-1.1
5,035,679	-				-1.5
5,035,679	-				-2.4
5,035,679	-				+1.5
5,035,679	-				-0.3
5,035,679	-				+0.1
5,035,679	-				+1.2
5,035,723	-				-0.0
5,035,830	+		PFLU_RS22395	0.17	+1.5
5,035,831	-		PFLU_RS22395	0.17	-1.8
5,035,897	+		PFLU_RS22395	0.26	-2.0
5,035,897	+		PFLU_RS22395	0.26	-1.9
5,035,898	-		PFLU_RS22395	0.26	-0.2
5,035,898	-		PFLU_RS22395	0.26	-0.8
5,035,898	-		PFLU_RS22395	0.26	-1.5
5,035,904	+		PFLU_RS22395	0.27	-0.3
5,035,904	+		PFLU_RS22395	0.27	-2.1
5,035,904	+		PFLU_RS22395	0.27	-0.5
5,035,904	+		PFLU_RS22395	0.27	-1.3
5,035,904	+		PFLU_RS22395	0.27	-2.4
5,035,905	-		PFLU_RS22395	0.27	-0.7
5,035,905	-		PFLU_RS22395	0.27	-0.7
5,035,905	-		PFLU_RS22395	0.27	-0.8
5,035,905	-		PFLU_RS22395	0.27	-1.1
5,036,299	+		PFLU_RS22395	0.80	-1.9
5,036,299	+		PFLU_RS22395	0.80	-1.9
5,036,299	+		PFLU_RS22395	0.80	-0.8
5,036,299	+		PFLU_RS22395	0.80	-2.0
5,036,299	+		PFLU_RS22395	0.80	-2.1
5,036,299	+		PFLU_RS22395	0.80	-2.0
5,036,299	+		PFLU_RS22395	0.80	-1.5
5,036,299	+		PFLU_RS22395	0.80	+1.1
5,036,299	+		PFLU_RS22395	0.80	-0.6
5,036,299	+		PFLU_RS22395	0.80	-1.5
5,036,300	-		PFLU_RS22395	0.81	-0.5
5,036,300	-		PFLU_RS22395	0.81	-0.9
5,036,300	-		PFLU_RS22395	0.81	-1.9
5,036,300	-		PFLU_RS22395	0.81	-1.3
5,036,300	-		PFLU_RS22395	0.81	-1.6
5,036,300	-		PFLU_RS22395	0.81	-1.4
5,036,388	+				-0.9
5,036,388	+				-1.8
5,036,440	+				-0.6
5,036,441	-				-2.6
5,036,456	+				-0.3
5,036,457	-				-0.7
5,036,511	-				+0.9
5,036,512	+				+1.2
5,036,512	+				-2.4
5,036,512	+				-0.8
5,036,512	+				-0.7
5,036,512	+				+0.8
5,036,513	-				-0.5
5,036,513	-				+0.4