Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08425

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08420 and BWI76_RS08425 are separated by 99 nucleotidesBWI76_RS08425 and BWI76_RS08430 overlap by 1 nucleotides BWI76_RS08420: BWI76_RS08420 - dihydrolipoamide succinyltransferase, at 1,782,047 to 1,783,270 _RS08420 BWI76_RS08425: BWI76_RS08425 - succinyl-CoA ligase subunit beta, at 1,783,370 to 1,784,536 _RS08425 BWI76_RS08430: BWI76_RS08430 - succinate--CoA ligase subunit alpha, at 1,784,536 to 1,785,405 _RS08430 Position (kb) 1783 1784 1785Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 1783.362 kb on - strandat 1783.417 kb on - strandat 1783.706 kb on + strand, within BWI76_RS08425at 1784.119 kb on + strand, within BWI76_RS08425at 1784.773 kb on + strand, within BWI76_RS08430at 1784.811 kb on + strand, within BWI76_RS08430at 1784.921 kb on + strand, within BWI76_RS08430at 1784.921 kb on + strand, within BWI76_RS08430at 1784.921 kb on + strand, within BWI76_RS08430at 1785.273 kb on - strand, within BWI76_RS08430at 1785.338 kb on - strandat 1785.345 kb on + strandat 1785.428 kb on - strandat 1785.437 kb on + strandat 1785.438 kb on + strandat 1785.438 kb on + strandat 1785.438 kb on + strandat 1785.438 kb on + strandat 1785.438 kb on + strandat 1785.438 kb on + strandat 1785.438 kb on + strandat 1785.438 kb on + strandat 1785.438 kb on + strandat 1785.438 kb on + strandat 1785.438 kb on + strandat 1785.438 kb on + strandat 1785.438 kb on + strandat 1785.438 kb on + strandat 1785.438 kb on + strandat 1785.438 kb on + strandat 1785.438 kb on + strandat 1785.438 kb on + strandat 1785.446 kb on - strandat 1785.446 kb on - strandat 1785.446 kb on - strandat 1785.446 kb on - strandat 1785.446 kb on - strandat 1785.446 kb on - strandat 1785.446 kb on - strandat 1785.446 kb on - strandat 1785.446 kb on - strandat 1785.446 kb on - strandat 1785.446 kb on - strandat 1785.446 kb on - strandat 1785.446 kb on - strandat 1785.446 kb on - strandat 1785.446 kb on - strandat 1785.446 kb on - strandat 1785.446 kb on - strandat 1785.453 kb on + strandat 1785.465 kb on + strandat 1785.500 kb on + strandat 1785.500 kb on + strandat 1785.500 kb on + strandat 1785.500 kb on + strandat 1785.500 kb on + strandat 1785.500 kb on + strandat 1785.500 kb on + strandat 1785.500 kb on + strandat 1785.500 kb on + strandat 1785.500 kb on + strandat 1785.500 kb on + strandat 1785.500 kb on + strandat 1785.500 kb on + strandat 1785.508 kb on - strandat 1785.508 kb on - strandat 1785.508 kb on - strandat 1785.508 kb on - strandat 1785.508 kb on - strandat 1785.508 kb on - strandat 1785.508 kb on - strandat 1785.508 kb on - strandat 1785.508 kb on - strandat 1785.510 kb on + strandat 1785.510 kb on + strandat 1785.510 kb on + strandat 1785.510 kb on + strandat 1785.518 kb on - strandat 1785.518 kb on - strandat 1785.518 kb on - strandat 1785.518 kb on - strandat 1785.518 kb on - strandat 1785.518 kb on - strandat 1785.523 kb on - strandat 1785.525 kb on + strandat 1785.525 kb on + strandat 1785.533 kb on + strandat 1785.533 kb on - strandat 1785.533 kb on - strandat 1785.533 kb on - strandat 1785.533 kb on - strandat 1785.533 kb on - strandat 1785.533 kb on - strandat 1785.533 kb on - strandat 1785.533 kb on - strandat 1785.533 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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1,783,362 - -4.3
1,783,417 - -2.8
1,783,706 + BWI76_RS08425 0.29 -1.5
1,784,119 + BWI76_RS08425 0.64 -2.1
1,784,773 + BWI76_RS08430 0.27 +1.9
1,784,811 + BWI76_RS08430 0.32 -1.8
1,784,921 + BWI76_RS08430 0.44 -1.4
1,784,921 + BWI76_RS08430 0.44 -0.9
1,784,921 + BWI76_RS08430 0.44 -4.9
1,785,273 - BWI76_RS08430 0.85 -2.8
1,785,338 - -3.0
1,785,345 + -5.2
1,785,428 - -1.9
1,785,437 + -0.3
1,785,438 + +0.2
1,785,438 + +1.0
1,785,438 + -0.0
1,785,438 + -1.2
1,785,438 + -1.6
1,785,438 + -0.2
1,785,438 + -0.6
1,785,438 + +0.1
1,785,438 + +0.2
1,785,438 + -1.3
1,785,438 + +0.7
1,785,438 + +0.8
1,785,438 + +0.1
1,785,438 + -0.5
1,785,438 + -3.0
1,785,438 + +0.6
1,785,438 + +1.6
1,785,438 + -0.6
1,785,446 - -0.5
1,785,446 - -2.0
1,785,446 - -0.5
1,785,446 - -1.0
1,785,446 - -0.1
1,785,446 - +0.1
1,785,446 - +0.7
1,785,446 - -2.6
1,785,446 - -3.5
1,785,446 - -0.5
1,785,446 - -2.4
1,785,446 - +0.8
1,785,446 - -0.6
1,785,446 - +1.1
1,785,446 - -2.5
1,785,446 - -0.7
1,785,446 - +0.7
1,785,453 + +0.8
1,785,465 + -1.8
1,785,500 + -0.0
1,785,500 + +0.2
1,785,500 + +0.9
1,785,500 + -1.5
1,785,500 + +0.5
1,785,500 + -0.4
1,785,500 + +0.0
1,785,500 + +0.7
1,785,500 + -1.2
1,785,500 + -0.4
1,785,500 + +1.1
1,785,500 + +0.8
1,785,500 + -0.3
1,785,508 - +0.6
1,785,508 - -0.5
1,785,508 - -1.2
1,785,508 - +1.3
1,785,508 - +0.5
1,785,508 - +1.7
1,785,508 - -0.6
1,785,508 - +3.4
1,785,508 - -0.1
1,785,510 + -0.3
1,785,510 + -0.9
1,785,510 + -0.1
1,785,510 + -0.7
1,785,518 - -0.1
1,785,518 - +0.3
1,785,518 - -0.5
1,785,518 - +0.5
1,785,518 - +0.1
1,785,518 - -0.2
1,785,523 - -1.2
1,785,525 + +1.2
1,785,525 + +4.2
1,785,533 + -1.7
1,785,533 - -3.9
1,785,533 - -4.5
1,785,533 - -2.2
1,785,533 - +0.5
1,785,533 - -2.2
1,785,533 - +0.3
1,785,533 - -0.7
1,785,533 - -2.4
1,785,533 - -0.1

Or see this region's nucleotide sequence