Experiment: Rhamnogalacturonan - from potato (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0647 and BT0648 are separated by 61 nucleotides BT0648 and BT0649 are separated by 4 nucleotides BT0649 and BT0650 are separated by 71 nucleotides
BT0647: BT0647 - thiamine phosphate pyrophosphorylase (NCBI ptt file), at 797,658 to 798,266
BT0647
BT0648: BT0648 - molybdopterin biosynthesis protein (NCBI ptt file), at 798,328 to 799,020
BT0648
BT0649: BT0649 - thiamine biosynthesis protein ThiH (NCBI ptt file), at 799,025 to 800,149
BT0649
BT0650: BT0650 - thiamine biosynthesis protein ThiC (NCBI ptt file), at 800,221 to 801,918
BT0650
Position (kb) 799
800
801 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 798.177 kb on + strand, within BT0647 at 798.178 kb on - strand, within BT0647 at 798.212 kb on + strand at 798.212 kb on + strand at 798.219 kb on - strand at 798.357 kb on + strand at 798.358 kb on - strand at 798.460 kb on - strand, within BT0648 at 798.637 kb on - strand, within BT0648 at 798.670 kb on + strand, within BT0648 at 798.673 kb on + strand, within BT0648 at 798.683 kb on + strand, within BT0648 at 798.784 kb on + strand, within BT0648 at 798.785 kb on - strand, within BT0648 at 798.818 kb on + strand, within BT0648 at 798.846 kb on + strand, within BT0648 at 798.866 kb on - strand, within BT0648 at 798.922 kb on + strand, within BT0648 at 798.937 kb on + strand, within BT0648 at 798.942 kb on + strand, within BT0648 at 798.942 kb on + strand, within BT0648 at 799.268 kb on + strand, within BT0649 at 799.389 kb on + strand, within BT0649 at 799.431 kb on + strand, within BT0649 at 799.431 kb on + strand, within BT0649 at 799.516 kb on + strand, within BT0649 at 799.579 kb on + strand, within BT0649 at 799.812 kb on + strand, within BT0649 at 799.914 kb on + strand, within BT0649 at 799.963 kb on - strand, within BT0649 at 800.061 kb on - strand at 800.094 kb on + strand at 800.223 kb on - strand at 800.261 kb on - strand at 800.300 kb on + strand at 800.300 kb on + strand at 800.498 kb on - strand, within BT0650 at 800.554 kb on - strand, within BT0650 at 800.563 kb on + strand, within BT0650 at 800.599 kb on - strand, within BT0650 at 800.624 kb on + strand, within BT0650 at 800.714 kb on - strand, within BT0650 at 800.714 kb on - strand, within BT0650 at 800.870 kb on + strand, within BT0650 at 801.009 kb on + strand, within BT0650 at 801.009 kb on + strand, within BT0650 at 801.010 kb on - strand, within BT0650 at 801.010 kb on - strand, within BT0650 at 801.137 kb on + strand, within BT0650
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan - from potato (C) remove 798,177 + BT0647 0.85 -3.5 798,178 - BT0647 0.85 -2.1 798,212 + -0.4 798,212 + -1.4 798,219 - -2.6 798,357 + -1.9 798,358 - -3.5 798,460 - BT0648 0.19 -0.6 798,637 - BT0648 0.45 -3.6 798,670 + BT0648 0.49 -0.6 798,673 + BT0648 0.50 +0.9 798,683 + BT0648 0.51 -1.6 798,784 + BT0648 0.66 -3.4 798,785 - BT0648 0.66 -0.1 798,818 + BT0648 0.71 -1.6 798,846 + BT0648 0.75 -2.4 798,866 - BT0648 0.78 +0.9 798,922 + BT0648 0.86 -2.4 798,937 + BT0648 0.88 -1.9 798,942 + BT0648 0.89 -2.4 798,942 + BT0648 0.89 -1.4 799,268 + BT0649 0.22 -1.6 799,389 + BT0649 0.32 -0.1 799,431 + BT0649 0.36 -1.4 799,431 + BT0649 0.36 -2.8 799,516 + BT0649 0.44 -0.1 799,579 + BT0649 0.49 -3.4 799,812 + BT0649 0.70 -0.6 799,914 + BT0649 0.79 -1.4 799,963 - BT0649 0.83 -2.8 800,061 - -2.4 800,094 + -3.3 800,223 - -2.2 800,261 - -1.1 800,300 + +0.9 800,300 + -2.3 800,498 - BT0650 0.16 -1.9 800,554 - BT0650 0.20 -0.3 800,563 + BT0650 0.20 -3.1 800,599 - BT0650 0.22 -0.6 800,624 + BT0650 0.24 -0.1 800,714 - BT0650 0.29 -0.1 800,714 - BT0650 0.29 -3.0 800,870 + BT0650 0.38 -0.6 801,009 + BT0650 0.46 -1.6 801,009 + BT0650 0.46 -4.4 801,010 - BT0650 0.46 -0.5 801,010 - BT0650 0.46 -0.6 801,137 + BT0650 0.54 -1.6
Or see this region's nucleotide sequence