Strain Fitness in Shewanella oneidensis MR-1 around SO3822

Experiment: fumarate electron acceptor

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	fumarate electron acceptor
3,971,680	+		SO3821	0.42	-0.7
3,971,688	+		SO3821	0.43	+0.6
3,971,688	+		SO3821	0.43	+0.6
3,971,688	+		SO3821	0.43	+0.6
3,971,688	+		SO3821	0.43	-0.2
3,971,688	+		SO3821	0.43	-0.1
3,971,688	+		SO3821	0.43	+0.8
3,971,688	+		SO3821	0.43	-0.2
3,971,688	+		SO3821	0.43	+0.7
3,971,688	+		SO3821	0.43	+0.2
3,971,688	+		SO3821	0.43	+3.2
3,971,688	+		SO3821	0.43	-1.3
3,971,688	+		SO3821	0.43	+2.1
3,971,688	+		SO3821	0.43	+0.4
3,971,688	+		SO3821	0.43	-1.5
3,971,696	-		SO3821	0.43	+0.1
3,971,696	-		SO3821	0.43	-0.9
3,971,696	-		SO3821	0.43	-0.1
3,971,696	-		SO3821	0.43	-0.0
3,971,696	-		SO3821	0.43	+1.0
3,971,696	-		SO3821	0.43	-0.4
3,971,696	-		SO3821	0.43	+1.1
3,971,696	-		SO3821	0.43	+0.9
3,971,696	-		SO3821	0.43	-0.9
3,971,696	-		SO3821	0.43	-0.9
3,971,696	-		SO3821	0.43	+0.6
3,971,696	-		SO3821	0.43	-0.4
3,971,696	-		SO3821	0.43	-2.0
3,971,696	-		SO3821	0.43	-1.3
3,971,809	-		SO3821	0.50	+0.0
3,971,814	-		SO3821	0.51	-0.4
3,971,916	+		SO3821	0.57	-0.9
3,971,917	+		SO3821	0.57	-1.8
3,971,924	-		SO3821	0.58	-1.2
3,971,926	+		SO3821	0.58	+1.2
3,971,926	+		SO3821	0.58	+1.4
3,971,981	-		SO3821	0.61	-2.6
3,971,983	-		SO3821	0.62	+0.9
3,971,998	-		SO3821	0.63	-0.0
3,972,004	+		SO3821	0.63	+1.3
3,972,004	+		SO3821	0.63	-0.2
3,972,010	+		SO3821	0.63	+2.8
3,972,012	-		SO3821	0.63	-0.4
3,972,012	-		SO3821	0.63	+0.1
3,972,040	+		SO3821	0.65	+2.6
3,972,040	+		SO3821	0.65	+2.0
3,972,048	-		SO3821	0.66	+1.2
3,972,079	+		SO3821	0.68	-1.6
3,972,079	+		SO3821	0.68	+0.6
3,972,079	+		SO3821	0.68	-0.7
3,972,079	+		SO3821	0.68	-2.3
3,972,079	+		SO3821	0.68	+0.4
3,972,087	-		SO3821	0.68	-0.0
3,972,087	-		SO3821	0.68	+1.7
3,972,087	-		SO3821	0.68	-0.3
3,972,087	-		SO3821	0.68	+1.6
3,972,087	-		SO3821	0.68	-0.1
3,972,087	-		SO3821	0.68	+1.1
3,972,103	+		SO3821	0.69	+0.3
3,972,104	-		SO3821	0.69	-1.6
3,972,109	-		SO3821	0.70	+0.7
3,972,160	+		SO3821	0.73	-0.3
3,972,245	+		SO3821	0.78	+0.2
3,972,268	+		SO3821	0.80	-1.3
3,972,279	+		SO3821	0.81	+0.2
3,972,288	+		SO3821	0.81	+1.6
3,972,296	-		SO3821	0.82	+3.7
3,972,296	-		SO3821	0.82	-2.6
3,972,296	-		SO3821	0.82	-1.3
3,972,296	-		SO3821	0.82	+0.2
3,972,326	+		SO3821	0.84	+0.9
3,972,331	+		SO3821	0.84	+1.4
3,972,331	+		SO3821	0.84	+0.4
3,972,331	+		SO3821	0.84	+0.8
3,972,331	+		SO3821	0.84	+0.6
3,972,331	+		SO3821	0.84	+2.1
3,972,337	+		SO3821	0.84	+0.1
3,972,337	+		SO3821	0.84	+0.8
3,972,337	+		SO3821	0.84	+0.9
3,972,337	+		SO3821	0.84	+1.3
3,972,337	+		SO3821	0.84	+0.5
3,972,337	+		SO3821	0.84	+1.7
3,972,337	+		SO3821	0.84	+2.5
3,972,337	+		SO3821	0.84	-0.9
3,972,339	-		SO3821	0.85	+1.0
3,972,339	-		SO3821	0.85	+0.2
3,972,339	-		SO3821	0.85	+2.1
3,972,342	+		SO3821	0.85	+0.9
3,972,342	+		SO3821	0.85	+0.1
3,972,342	+		SO3821	0.85	+0.5
3,972,345	-		SO3821	0.85	+0.9
3,972,345	-		SO3821	0.85	+1.4
3,972,345	-		SO3821	0.85	-0.3
3,972,345	-		SO3821	0.85	-0.4
3,972,345	-		SO3821	0.85	-0.8
3,972,345	-		SO3821	0.85	+2.3
3,972,345	-		SO3821	0.85	+1.1
3,972,345	-		SO3821	0.85	+1.6
3,972,345	-		SO3821	0.85	-0.0
3,972,345	-		SO3821	0.85	-0.2
3,972,345	-		SO3821	0.85	-0.7
3,972,345	-		SO3821	0.85	-0.7
3,972,350	+		SO3821	0.85	+1.0
3,972,353	-		SO3821	0.85	+1.9
3,972,360	-		SO3821	0.86	+2.3
3,972,360	-		SO3821	0.86	+0.3
3,972,361	+		SO3821	0.86	-0.8
3,972,361	+		SO3821	0.86	+0.1
3,972,396	+		SO3821	0.88	-1.0
3,972,404	+		SO3821	0.89	+1.1
3,972,404	-		SO3821	0.89	-1.4
3,972,404	-		SO3821	0.89	-1.0
3,972,404	-		SO3821	0.89	+0.9
3,972,404	-		SO3821	0.89	+2.8
3,972,406	+		SO3821	0.89	-1.0
3,972,412	+		SO3821	0.89	+1.6
3,972,412	-		SO3821	0.89	+1.2
3,972,413	+		SO3821	0.89	+2.1
3,972,414	-		SO3821	0.89	+0.1
3,972,414	-		SO3821	0.89	+0.7
3,972,420	-		SO3821	0.90	+0.3
3,972,421	-		SO3821	0.90	-0.4
3,972,456	+				+2.7
3,972,463	-				+2.1
3,972,464	-				+2.1
3,972,483	-				+0.3
3,972,488	-				+2.2
3,972,488	-				+0.6
3,972,488	-				+1.5
3,972,606	+				+1.2
3,972,606	+				+2.1
3,972,614	-				+0.4
3,972,626	+				-1.8
3,972,626	+				-1.6
3,972,626	+				+0.7
3,972,626	+				-1.7
3,972,626	+				-1.9
3,972,626	+				-3.4
3,972,626	+				-0.0
3,972,628	-				-0.5
3,972,629	-				-1.0
3,972,634	-				-1.0
3,972,634	-				-1.9
3,972,634	-				-1.1
3,972,639	-				-2.9
3,972,646	+				+2.2
3,972,673	+				-1.3
3,972,683	+				-0.7
3,972,683	+				+0.1
3,972,683	+				+2.0
3,972,683	+				+0.1
3,972,683	+				+0.6
3,972,683	-				+2.1
3,972,691	-				+0.0
3,972,709	+				+1.3
3,972,712	-				-0.4
3,972,712	-				-0.6
3,972,778	+		SO3822	0.13	-1.2
3,972,785	-				+1.9
3,972,789	+		SO3822	0.14	+0.3
3,972,789	+		SO3822	0.14	-1.5
3,972,795	+		SO3822	0.15	+2.7
3,972,797	-		SO3822	0.15	+1.3
3,972,797	-		SO3822	0.15	+0.5
3,972,797	-		SO3822	0.15	+1.7
3,972,803	-		SO3822	0.16	-1.1
3,972,805	-		SO3822	0.16	-0.0
3,972,824	+		SO3822	0.18	+3.8
3,972,830	+		SO3822	0.19	+1.3
3,972,838	-		SO3822	0.20	+0.5
3,972,848	+		SO3822	0.21	+1.0
3,972,848	+		SO3822	0.21	+2.5
3,972,848	+		SO3822	0.21	-0.0
3,972,848	+		SO3822	0.21	-0.9
3,972,848	+		SO3822	0.21	+1.9
3,972,848	+		SO3822	0.21	+0.1
3,972,856	-		SO3822	0.22	-1.4
3,972,856	-		SO3822	0.22	+1.3
3,972,856	-		SO3822	0.22	-0.0
3,972,856	-		SO3822	0.22	-0.9
3,972,856	-		SO3822	0.22	-1.7
3,972,856	-		SO3822	0.22	+1.6
3,972,856	-		SO3822	0.22	-1.3
3,972,856	-		SO3822	0.22	+0.3
3,972,856	-		SO3822	0.22	+2.0
3,972,856	-		SO3822	0.22	-3.3
3,972,856	-		SO3822	0.22	-1.8
3,972,856	-		SO3822	0.22	+0.0
3,972,865	+		SO3822	0.23	+1.0
3,972,870	+		SO3822	0.23	-0.4
3,972,873	-		SO3822	0.24	+1.9
3,972,873	-		SO3822	0.24	-1.8
3,972,873	-		SO3822	0.24	+0.1
3,972,873	-		SO3822	0.24	-1.0
3,972,873	-		SO3822	0.24	+1.4
3,972,873	-		SO3822	0.24	+0.1
3,972,873	-		SO3822	0.24	+0.3
3,972,879	+		SO3822	0.24	+2.1
3,972,887	-		SO3822	0.25	+0.4
3,972,892	-		SO3822	0.26	+3.0
3,972,892	-		SO3822	0.26	-0.9
3,972,892	-		SO3822	0.26	+1.3
3,972,924	-		SO3822	0.30	-0.4
3,972,955	-		SO3822	0.33	+3.3
3,972,983	-		SO3822	0.36	-1.3
3,973,017	+		SO3822	0.40	-3.4
3,973,025	-		SO3822	0.41	-0.9
3,973,034	-		SO3822	0.42	+1.6
3,973,045	-		SO3822	0.43	+0.7
3,973,052	+		SO3822	0.44	-0.2
3,973,060	-		SO3822	0.45	+0.5
3,973,090	-		SO3822	0.49	-0.2
3,973,090	-		SO3822	0.49	-1.6
3,973,118	+		SO3822	0.52	+0.9
3,973,118	+		SO3822	0.52	+0.1
3,973,118	+		SO3822	0.52	+1.1
3,973,118	+		SO3822	0.52	-0.2
3,973,126	-		SO3822	0.53	-0.8
3,973,126	-		SO3822	0.53	+0.1
3,973,126	-		SO3822	0.53	+0.3
3,973,126	-		SO3822	0.53	+1.0
3,973,126	-		SO3822	0.53	+2.0
3,973,167	-		SO3822	0.57	+1.2
3,973,234	+		SO3822	0.65	-0.2
3,973,236	-		SO3822	0.65	+0.5
3,973,244	+		SO3822	0.66	+2.0
3,973,244	+		SO3822	0.66	+1.6
3,973,244	+		SO3822	0.66	-1.3
3,973,244	+		SO3822	0.66	+0.9
3,973,252	-		SO3822	0.67	+1.0
3,973,252	-		SO3822	0.67	+0.7
3,973,252	-		SO3822	0.67	+0.9
3,973,294	-		SO3822	0.72	-0.4
3,973,328	+		SO3822	0.76	+0.2
3,973,328	+		SO3822	0.76	+0.1
3,973,328	+		SO3822	0.76	-0.9
3,973,328	+		SO3822	0.76	+0.6
3,973,328	+		SO3822	0.76	-0.3
3,973,328	+		SO3822	0.76	-1.6
3,973,328	+		SO3822	0.76	+2.5
3,973,336	-		SO3822	0.77	+0.5
3,973,336	-		SO3822	0.77	-1.1
3,973,364	+		SO3822	0.80	+2.7
3,973,364	+		SO3822	0.80	+1.8
3,973,398	+		SO3822	0.84	+1.1
3,973,406	-		SO3822	0.85	-1.2
3,973,408	+		SO3822	0.85	-0.7
3,973,408	+		SO3822	0.85	+2.9
3,973,408	+		SO3822	0.85	-1.4
3,973,408	+		SO3822	0.85	-0.1
3,973,408	+		SO3822	0.85	+1.7
3,973,408	+		SO3822	0.85	-0.2
3,973,409	+		SO3822	0.85	+2.6
3,973,416	-		SO3822	0.86	+2.4
3,973,416	-		SO3822	0.86	-1.2
3,973,416	-		SO3822	0.86	-0.0
3,973,416	-		SO3822	0.86	-0.9
3,973,433	-		SO3822	0.88	-1.9
3,973,453	+				+0.3
3,973,453	+				+1.6
3,973,453	+				+2.1
3,973,454	+				+3.2
3,973,454	+				-0.4
3,973,454	+				+0.3
3,973,454	+				-1.0
3,973,454	+				+1.7
3,973,461	-				+2.5
3,973,461	-				-1.6
3,973,461	-				+3.3
3,973,461	-				+0.2
3,973,461	-				+1.6
3,973,461	-				-0.0
3,973,461	-				+1.7
3,973,461	-				-1.9
3,973,461	-				+2.0
3,973,461	-				-0.2
3,973,461	-				+0.5
3,973,462	-				+0.1
3,973,462	-				-0.6
3,973,463	-				-0.2
3,973,463	-				+1.9
3,973,486	+				-0.6
3,973,486	+				-0.8
3,973,486	+				-1.9
3,973,486	+				+1.4
3,973,486	+				+1.1
3,973,486	+				-1.9
3,973,486	+				+0.5
3,973,492	+				+0.7
3,973,492	+				+0.4
3,973,493	-				+2.3
3,973,494	-				-1.0
3,973,494	-				+1.5
3,973,494	-				+2.8
3,973,494	-				-0.6
3,973,494	-				+0.7
3,973,494	-				-1.8
3,973,494	-				-0.7
3,973,494	-				+1.3
3,973,494	-				-0.9
3,973,494	-				-0.1
3,973,494	-				-1.6
3,973,500	-				+0.0
3,973,500	-				+1.4
3,973,500	-				+1.0
3,973,500	-				-0.4
3,973,511	-				-0.3
3,973,556	+				+1.4
3,973,569	+				-0.8
3,973,577	-				+1.8
3,973,615	+				-0.4
3,973,615	+				+1.7
3,973,615	-				+0.4
3,973,622	-				-1.8
3,973,623	-				+0.6
3,973,623	-				+0.7
3,973,623	-				+1.6
3,973,623	-				+0.1
3,973,641	-				-0.7
3,973,653	+				-0.2
3,973,719	-				-1.3
3,973,754	-				+0.2
3,973,754	-				-2.4
3,973,761	+				-0.9
3,973,761	+				-0.2
3,973,761	+				+0.7
3,973,762	+				-1.9
3,973,762	+				+0.6
3,973,762	+				+1.1
3,973,767	+				-0.9
3,973,767	+				-1.9
3,973,767	+				+1.1
3,973,767	+				-1.7
3,973,767	+				+0.5
3,973,767	+				+1.4
3,973,767	+				+0.2
3,973,767	+				-0.4
3,973,767	+				-0.9
3,973,767	+				-0.4
3,973,767	+				+1.9
3,973,767	+				-0.7
3,973,767	+				-0.1
3,973,767	+				+0.3
3,973,767	+				-0.1
3,973,767	+				+0.1
3,973,769	-				+0.1
3,973,775	-				-0.2
3,973,775	-				+1.8
3,973,775	-				-0.5
3,973,775	-				+2.2
3,973,775	-				+0.8
3,973,775	-				-1.9
3,973,775	-				-3.0
3,973,779	+				+0.1
3,973,805	-				+0.3
3,973,823	+				-0.6
3,973,823	+				-1.9
3,973,823	+				+1.3
3,973,823	+				+0.3
3,973,824	+				-2.3
3,973,824	-				+0.5
3,973,824	-				-2.3
3,973,826	+				+0.9
3,973,826	+				+0.9
3,973,827	-				+1.4
3,973,829	-				-0.1
3,973,831	-				-0.5
3,973,831	-				+2.0
3,973,831	-				-0.2
3,973,831	-				+0.1
3,973,831	-				-1.7
3,973,831	-				+1.1
3,973,836	-				-1.7
3,973,852	+				-2.2
3,973,852	+				+1.1
3,973,852	+				+0.4
3,973,852	+				+1.1
3,973,852	+				+0.3
3,973,852	+				-0.5
3,973,856	-				-3.1
3,973,860	-				-2.1
3,973,860	-				+2.3
3,973,860	-				+2.1
3,973,860	-				-1.5
3,973,860	-				+0.6
3,973,860	-				-0.3
3,973,860	-				+0.6
3,973,860	-				+0.3
3,973,860	-				-0.9
3,973,916	+				-1.0
3,973,924	-				-0.7
3,973,944	+				+1.1
3,974,000	-				-1.9
3,974,065	+				+1.4
3,974,066	+				+2.7
3,974,071	+				+0.1
3,974,071	+				+0.5
3,974,071	+				+0.1
3,974,071	+				+0.3
3,974,072	-				-1.7
3,974,081	+				-1.5
3,974,081	+				-1.2
3,974,081	+				-2.7
3,974,081	+				-0.3
3,974,081	+				-0.9
3,974,081	+				-1.7
3,974,089	-				+0.7
3,974,089	-				+0.4
3,974,089	-				-2.2
3,974,089	-				+0.8
3,974,090	-				-1.1
3,974,090	-				+0.0
3,974,090	-				+0.1
3,974,099	+				-1.1
3,974,099	+				+0.8
3,974,107	+				+1.0
3,974,107	-				-1.4
3,974,107	-				+0.2
3,974,137	-				+0.7
3,974,139	+				-0.6
3,974,182	+				+2.1
3,974,182	+				+1.0
3,974,182	+				+0.5
3,974,182	+				+0.3
3,974,182	+				-0.9
3,974,190	-				+2.3
3,974,190	-				+0.6
3,974,290	-				+3.4