Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0449 and SO0450 are separated by 72 nucleotides SO0450 and SO0451 are separated by 311 nucleotides SO0451 and trxC overlap by 18 nucleotides
SO0449: SO0449 - conserved hypothetical protein (NCBI ptt file), at 475,608 to 477,227
SO0449
SO0450: SO0450 - major facilitator family protein (NCBI ptt file), at 477,300 to 478,463
SO0450
SO0451: SO0451 - hypothetical protein (NCBI ptt file), at 478,775 to 478,927
SO0451
SO0452: trxC - thioredoxin 2 (NCBI ptt file), at 478,910 to 479,332
trxC
Position (kb) 477
478
479 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 476.381 kb on + strand, within SO0449 at 476.399 kb on - strand, within SO0449 at 476.551 kb on + strand, within SO0449 at 476.551 kb on + strand, within SO0449 at 476.551 kb on + strand, within SO0449 at 476.551 kb on + strand, within SO0449 at 476.551 kb on + strand, within SO0449 at 476.551 kb on + strand, within SO0449 at 476.559 kb on - strand, within SO0449 at 476.559 kb on - strand, within SO0449 at 476.559 kb on - strand, within SO0449 at 476.559 kb on - strand, within SO0449 at 476.559 kb on - strand, within SO0449 at 476.559 kb on - strand, within SO0449 at 476.559 kb on - strand, within SO0449 at 476.559 kb on - strand, within SO0449 at 476.559 kb on - strand, within SO0449 at 476.559 kb on - strand, within SO0449 at 476.788 kb on + strand, within SO0449 at 476.796 kb on - strand, within SO0449 at 476.796 kb on - strand, within SO0449 at 476.796 kb on - strand, within SO0449 at 476.936 kb on + strand, within SO0449 at 477.071 kb on + strand at 477.079 kb on + strand at 477.124 kb on + strand at 477.161 kb on + strand at 477.199 kb on + strand at 477.268 kb on - strand at 477.279 kb on - strand at 477.300 kb on - strand at 477.313 kb on + strand at 477.325 kb on + strand at 477.347 kb on - strand at 477.398 kb on - strand at 477.415 kb on - strand at 477.540 kb on + strand, within SO0450 at 477.593 kb on - strand, within SO0450 at 477.613 kb on + strand, within SO0450 at 477.699 kb on + strand, within SO0450 at 477.707 kb on + strand, within SO0450 at 477.707 kb on - strand, within SO0450 at 477.804 kb on - strand, within SO0450 at 477.875 kb on + strand, within SO0450 at 478.047 kb on + strand, within SO0450 at 478.193 kb on + strand, within SO0450 at 478.201 kb on - strand, within SO0450 at 478.239 kb on + strand, within SO0450 at 478.278 kb on - strand, within SO0450 at 478.286 kb on + strand, within SO0450 at 478.336 kb on - strand, within SO0450 at 478.353 kb on - strand at 478.372 kb on - strand at 478.486 kb on - strand at 478.525 kb on + strand at 478.525 kb on + strand at 478.533 kb on - strand at 478.555 kb on - strand at 478.649 kb on + strand at 478.713 kb on - strand at 478.720 kb on - strand at 478.781 kb on - strand at 478.803 kb on + strand, within SO0451 at 478.807 kb on + strand, within SO0451 at 478.811 kb on - strand, within SO0451 at 478.931 kb on + strand at 478.939 kb on - strand at 478.947 kb on - strand at 478.949 kb on + strand at 479.063 kb on - strand, within trxC at 479.182 kb on - strand, within trxC at 479.296 kb on + strand at 479.304 kb on + strand at 479.396 kb on + strand at 479.415 kb on - strand at 479.462 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 476,381 + SO0449 0.48 -0.6 476,399 - SO0449 0.49 -0.8 476,551 + SO0449 0.58 +0.6 476,551 + SO0449 0.58 +2.3 476,551 + SO0449 0.58 +1.8 476,551 + SO0449 0.58 +1.4 476,551 + SO0449 0.58 -1.0 476,551 + SO0449 0.58 -0.1 476,559 - SO0449 0.59 -0.5 476,559 - SO0449 0.59 -1.4 476,559 - SO0449 0.59 -0.9 476,559 - SO0449 0.59 -0.3 476,559 - SO0449 0.59 -2.0 476,559 - SO0449 0.59 -0.7 476,559 - SO0449 0.59 +1.2 476,559 - SO0449 0.59 +1.2 476,559 - SO0449 0.59 -0.9 476,559 - SO0449 0.59 +1.2 476,788 + SO0449 0.73 +1.6 476,796 - SO0449 0.73 +1.9 476,796 - SO0449 0.73 +1.1 476,796 - SO0449 0.73 -0.4 476,936 + SO0449 0.82 -1.3 477,071 + -0.2 477,079 + +1.0 477,124 + +0.3 477,161 + +2.2 477,199 + -0.5 477,268 - +0.4 477,279 - +0.6 477,300 - -1.0 477,313 + -2.0 477,325 + -1.1 477,347 - +0.6 477,398 - -0.9 477,415 - -1.6 477,540 + SO0450 0.21 +0.6 477,593 - SO0450 0.25 -0.4 477,613 + SO0450 0.27 +0.3 477,699 + SO0450 0.34 -1.6 477,707 + SO0450 0.35 +2.0 477,707 - SO0450 0.35 +0.5 477,804 - SO0450 0.43 -0.3 477,875 + SO0450 0.49 +0.9 478,047 + SO0450 0.64 +5.5 478,193 + SO0450 0.77 -1.0 478,201 - SO0450 0.77 -0.8 478,239 + SO0450 0.81 +0.0 478,278 - SO0450 0.84 +0.6 478,286 + SO0450 0.85 +0.6 478,336 - SO0450 0.89 +0.9 478,353 - -0.2 478,372 - +0.1 478,486 - +0.1 478,525 + -0.3 478,525 + +1.2 478,533 - +0.3 478,555 - +0.4 478,649 + +1.0 478,713 - -1.7 478,720 - -1.9 478,781 - +1.1 478,803 + SO0451 0.18 -1.0 478,807 + SO0451 0.21 -2.7 478,811 - SO0451 0.24 +0.8 478,931 + -0.2 478,939 - +0.1 478,947 - -0.3 478,949 + -0.2 479,063 - trxC SO0452 0.36 +1.3 479,182 - trxC SO0452 0.64 -1.1 479,296 + -1.5 479,304 + +0.3 479,396 + -2.1 479,415 - -0.2 479,462 - -2.9
Or see this region's nucleotide sequence