Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0394 and prmA are separated by 175 nucleotides prmA and frdC are separated by 440 nucleotides
SO0394: SO0394 - conserved hypothetical protein (NCBI ptt file), at 407,220 to 408,188
SO0394
SO0395: prmA - ribosomal protein L11 methyltransferase (NCBI ptt file), at 408,364 to 409,245
prmA
SO0396: frdC - fumarate reductase cytochrome B subunit (NCBI ptt file), at 409,686 to 410,411
frdC
Position (kb) 408
409
410 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 407.462 kb on + strand, within SO0394 at 407.462 kb on + strand, within SO0394 at 407.470 kb on - strand, within SO0394 at 407.542 kb on + strand, within SO0394 at 407.550 kb on - strand, within SO0394 at 407.550 kb on - strand, within SO0394 at 407.555 kb on - strand, within SO0394 at 407.742 kb on + strand, within SO0394 at 407.762 kb on - strand, within SO0394 at 407.789 kb on + strand, within SO0394 at 407.797 kb on - strand, within SO0394 at 407.852 kb on - strand, within SO0394 at 407.857 kb on - strand, within SO0394 at 407.929 kb on + strand, within SO0394 at 407.952 kb on + strand, within SO0394 at 408.078 kb on + strand, within SO0394 at 408.216 kb on - strand at 408.216 kb on - strand at 408.216 kb on - strand at 408.356 kb on + strand at 408.418 kb on - strand at 408.486 kb on + strand, within prmA at 408.500 kb on + strand, within prmA at 408.515 kb on + strand, within prmA at 408.523 kb on - strand, within prmA at 408.538 kb on + strand, within prmA at 408.610 kb on + strand, within prmA at 408.610 kb on - strand, within prmA at 408.614 kb on - strand, within prmA at 408.749 kb on - strand, within prmA at 408.772 kb on + strand, within prmA at 408.777 kb on + strand, within prmA at 408.785 kb on - strand, within prmA at 408.785 kb on - strand, within prmA at 408.795 kb on + strand, within prmA at 408.795 kb on + strand, within prmA at 408.805 kb on - strand, within prmA at 408.812 kb on + strand, within prmA at 408.812 kb on + strand, within prmA at 408.812 kb on + strand, within prmA at 408.820 kb on - strand, within prmA at 408.820 kb on - strand, within prmA at 408.820 kb on - strand, within prmA at 408.820 kb on - strand, within prmA at 408.840 kb on - strand, within prmA at 408.866 kb on + strand, within prmA at 408.893 kb on - strand, within prmA at 408.895 kb on + strand, within prmA at 408.989 kb on - strand, within prmA at 409.022 kb on + strand, within prmA at 409.032 kb on + strand, within prmA at 409.032 kb on + strand, within prmA at 409.069 kb on - strand, within prmA at 409.143 kb on - strand, within prmA at 409.211 kb on + strand at 409.221 kb on - strand at 409.256 kb on - strand at 409.445 kb on - strand at 409.561 kb on + strand at 409.569 kb on - strand at 409.593 kb on + strand at 409.593 kb on + strand at 409.601 kb on - strand at 409.693 kb on + strand at 409.723 kb on - strand at 409.727 kb on + strand at 409.734 kb on + strand at 409.739 kb on + strand at 409.747 kb on - strand at 409.761 kb on + strand, within frdC at 409.780 kb on + strand, within frdC at 409.788 kb on - strand, within frdC at 409.860 kb on + strand, within frdC at 409.871 kb on + strand, within frdC at 409.894 kb on + strand, within frdC at 410.035 kb on + strand, within frdC at 410.035 kb on + strand, within frdC at 410.043 kb on - strand, within frdC at 410.043 kb on - strand, within frdC at 410.208 kb on - strand, within frdC at 410.208 kb on - strand, within frdC at 410.215 kb on + strand, within frdC at 410.217 kb on + strand, within frdC at 410.217 kb on + strand, within frdC at 410.220 kb on - strand, within frdC
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 407,462 + SO0394 0.25 +1.8 407,462 + SO0394 0.25 +3.2 407,470 - SO0394 0.26 -0.3 407,542 + SO0394 0.33 +0.6 407,550 - SO0394 0.34 +1.1 407,550 - SO0394 0.34 +1.3 407,555 - SO0394 0.35 -1.4 407,742 + SO0394 0.54 +0.9 407,762 - SO0394 0.56 +1.6 407,789 + SO0394 0.59 +0.6 407,797 - SO0394 0.60 -0.6 407,852 - SO0394 0.65 +1.4 407,857 - SO0394 0.66 +2.6 407,929 + SO0394 0.73 +1.2 407,952 + SO0394 0.76 +1.2 408,078 + SO0394 0.89 -0.6 408,216 - +1.3 408,216 - +2.2 408,216 - +0.4 408,356 + -0.3 408,418 - -1.4 408,486 + prmA SO0395 0.14 +1.8 408,500 + prmA SO0395 0.15 -0.4 408,515 + prmA SO0395 0.17 +0.2 408,523 - prmA SO0395 0.18 +0.2 408,538 + prmA SO0395 0.20 -0.5 408,610 + prmA SO0395 0.28 -0.8 408,610 - prmA SO0395 0.28 -1.4 408,614 - prmA SO0395 0.28 -0.6 408,749 - prmA SO0395 0.44 -1.2 408,772 + prmA SO0395 0.46 -0.8 408,777 + prmA SO0395 0.47 -0.1 408,785 - prmA SO0395 0.48 -0.6 408,785 - prmA SO0395 0.48 -1.1 408,795 + prmA SO0395 0.49 -0.9 408,795 + prmA SO0395 0.49 -2.3 408,805 - prmA SO0395 0.50 +1.2 408,812 + prmA SO0395 0.51 -0.6 408,812 + prmA SO0395 0.51 -0.5 408,812 + prmA SO0395 0.51 -2.0 408,820 - prmA SO0395 0.52 -0.3 408,820 - prmA SO0395 0.52 +0.8 408,820 - prmA SO0395 0.52 +1.3 408,820 - prmA SO0395 0.52 +1.2 408,840 - prmA SO0395 0.54 -0.3 408,866 + prmA SO0395 0.57 -0.7 408,893 - prmA SO0395 0.60 -0.9 408,895 + prmA SO0395 0.60 +1.2 408,989 - prmA SO0395 0.71 +0.0 409,022 + prmA SO0395 0.75 +0.4 409,032 + prmA SO0395 0.76 +1.0 409,032 + prmA SO0395 0.76 -2.3 409,069 - prmA SO0395 0.80 +1.8 409,143 - prmA SO0395 0.88 +3.7 409,211 + -0.6 409,221 - +0.9 409,256 - -2.0 409,445 - +0.4 409,561 + -0.7 409,569 - -0.7 409,593 + -0.9 409,593 + +2.2 409,601 - -0.4 409,693 + -2.1 409,723 - +0.9 409,727 + +6.2 409,734 + +0.2 409,739 + +1.9 409,747 - +1.1 409,761 + frdC SO0396 0.10 +1.3 409,780 + frdC SO0396 0.13 -1.0 409,788 - frdC SO0396 0.14 -1.9 409,860 + frdC SO0396 0.24 +0.9 409,871 + frdC SO0396 0.25 +1.4 409,894 + frdC SO0396 0.29 +0.1 410,035 + frdC SO0396 0.48 +0.2 410,035 + frdC SO0396 0.48 -1.3 410,043 - frdC SO0396 0.49 -0.3 410,043 - frdC SO0396 0.49 +1.2 410,208 - frdC SO0396 0.72 -1.3 410,208 - frdC SO0396 0.72 -0.9 410,215 + frdC SO0396 0.73 -0.6 410,217 + frdC SO0396 0.73 -1.4 410,217 + frdC SO0396 0.73 +0.0 410,220 - frdC SO0396 0.74 -0.7
Or see this region's nucleotide sequence