Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0045 and SO0046 overlap by 26 nucleotides SO0046 and SO0047 are separated by 9 nucleotides SO0047 and SO0048 are separated by 48 nucleotides
SO0045: SO0045 - Rrf2 family protein (NCBI ptt file), at 52,004 to 52,459
SO0045
SO0046: SO0046 - conserved hypothetical protein (NCBI ptt file), at 52,434 to 53,189
SO0046
SO0047: SO0047 - carboxyl-terminal protease, putative (NCBI ptt file), at 53,199 to 54,407
SO0047
SO0048: SO0048 - peptidase, M23/M37 family (NCBI ptt file), at 54,456 to 55,490
SO0048
Position (kb) 53
54
55 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 52.289 kb on + strand, within SO0045 at 52.351 kb on - strand, within SO0045 at 52.353 kb on + strand, within SO0045 at 52.519 kb on - strand, within SO0046 at 52.589 kb on + strand, within SO0046 at 52.709 kb on + strand, within SO0046 at 52.759 kb on + strand, within SO0046 at 52.830 kb on + strand, within SO0046 at 52.870 kb on - strand, within SO0046 at 52.935 kb on + strand, within SO0046 at 52.935 kb on + strand, within SO0046 at 52.943 kb on - strand, within SO0046 at 52.943 kb on - strand, within SO0046 at 52.966 kb on + strand, within SO0046 at 52.990 kb on + strand, within SO0046 at 52.998 kb on - strand, within SO0046 at 53.005 kb on + strand, within SO0046 at 53.013 kb on - strand, within SO0046 at 53.013 kb on - strand, within SO0046 at 53.022 kb on + strand, within SO0046 at 53.030 kb on - strand, within SO0046 at 53.142 kb on - strand at 53.144 kb on + strand at 53.152 kb on - strand at 53.152 kb on - strand at 53.254 kb on - strand at 53.334 kb on - strand, within SO0047 at 53.346 kb on - strand, within SO0047 at 53.382 kb on + strand, within SO0047 at 53.389 kb on + strand, within SO0047 at 53.390 kb on - strand, within SO0047 at 53.428 kb on + strand, within SO0047 at 53.441 kb on + strand, within SO0047 at 53.758 kb on - strand, within SO0047 at 53.771 kb on + strand, within SO0047 at 53.777 kb on - strand, within SO0047 at 53.906 kb on + strand, within SO0047 at 54.015 kb on + strand, within SO0047 at 54.049 kb on + strand, within SO0047 at 54.349 kb on - strand at 54.353 kb on + strand at 54.353 kb on + strand at 54.353 kb on + strand at 54.353 kb on + strand at 54.353 kb on + strand at 54.360 kb on + strand at 54.360 kb on + strand at 54.361 kb on - strand at 54.361 kb on - strand at 54.362 kb on - strand at 54.401 kb on - strand at 54.449 kb on + strand at 54.449 kb on + strand at 54.510 kb on + strand at 54.510 kb on + strand at 54.518 kb on - strand at 54.518 kb on - strand at 54.518 kb on - strand at 54.518 kb on - strand at 54.520 kb on + strand at 54.528 kb on - strand at 54.528 kb on - strand at 54.624 kb on + strand, within SO0048 at 54.632 kb on - strand, within SO0048 at 54.632 kb on - strand, within SO0048 at 54.660 kb on + strand, within SO0048 at 54.676 kb on - strand, within SO0048 at 54.769 kb on + strand, within SO0048 at 54.904 kb on - strand, within SO0048 at 54.940 kb on + strand, within SO0048 at 54.940 kb on + strand, within SO0048 at 54.948 kb on - strand, within SO0048 at 54.948 kb on - strand, within SO0048 at 54.948 kb on - strand, within SO0048 at 54.974 kb on + strand, within SO0048 at 54.974 kb on + strand, within SO0048 at 55.075 kb on + strand, within SO0048 at 55.083 kb on - strand, within SO0048 at 55.159 kb on + strand, within SO0048 at 55.164 kb on + strand, within SO0048 at 55.180 kb on - strand, within SO0048 at 55.277 kb on + strand, within SO0048 at 55.277 kb on + strand, within SO0048 at 55.277 kb on + strand, within SO0048 at 55.277 kb on + strand, within SO0048 at 55.285 kb on - strand, within SO0048 at 55.285 kb on - strand, within SO0048 at 55.285 kb on - strand, within SO0048 at 55.285 kb on - strand, within SO0048 at 55.365 kb on - strand, within SO0048
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 52,289 + SO0045 0.62 +1.1 52,351 - SO0045 0.76 -0.1 52,353 + SO0045 0.77 +0.6 52,519 - SO0046 0.11 +0.9 52,589 + SO0046 0.21 -1.8 52,709 + SO0046 0.36 -0.3 52,759 + SO0046 0.43 +2.2 52,830 + SO0046 0.52 +0.1 52,870 - SO0046 0.58 -1.3 52,935 + SO0046 0.66 -0.5 52,935 + SO0046 0.66 +0.3 52,943 - SO0046 0.67 +0.7 52,943 - SO0046 0.67 +1.1 52,966 + SO0046 0.70 -0.9 52,990 + SO0046 0.74 +0.2 52,998 - SO0046 0.75 -1.8 53,005 + SO0046 0.76 +0.6 53,013 - SO0046 0.77 +0.0 53,013 - SO0046 0.77 -0.2 53,022 + SO0046 0.78 -2.5 53,030 - SO0046 0.79 +0.8 53,142 - +1.9 53,144 + -0.3 53,152 - -0.3 53,152 - -1.1 53,254 - -0.9 53,334 - SO0047 0.11 -0.2 53,346 - SO0047 0.12 +2.0 53,382 + SO0047 0.15 +3.2 53,389 + SO0047 0.16 -0.9 53,390 - SO0047 0.16 +2.0 53,428 + SO0047 0.19 +0.7 53,441 + SO0047 0.20 -0.6 53,758 - SO0047 0.46 +1.2 53,771 + SO0047 0.47 +0.7 53,777 - SO0047 0.48 -0.4 53,906 + SO0047 0.58 -0.5 54,015 + SO0047 0.67 -0.8 54,049 + SO0047 0.70 +1.4 54,349 - -0.4 54,353 + -1.5 54,353 + -3.1 54,353 + +1.3 54,353 + -1.8 54,353 + -0.2 54,360 + +1.4 54,360 + -0.4 54,361 - +0.8 54,361 - -1.5 54,362 - -0.5 54,401 - -0.8 54,449 + -0.5 54,449 + +1.2 54,510 + -0.8 54,510 + -0.4 54,518 - -0.4 54,518 - +1.9 54,518 - +2.2 54,518 - -0.4 54,520 + -0.9 54,528 - -1.9 54,528 - -0.4 54,624 + SO0048 0.16 +2.2 54,632 - SO0048 0.17 +0.3 54,632 - SO0048 0.17 -0.6 54,660 + SO0048 0.20 -0.3 54,676 - SO0048 0.21 +2.9 54,769 + SO0048 0.30 +1.0 54,904 - SO0048 0.43 +1.7 54,940 + SO0048 0.47 -2.2 54,940 + SO0048 0.47 -0.4 54,948 - SO0048 0.48 +1.0 54,948 - SO0048 0.48 +0.2 54,948 - SO0048 0.48 +0.5 54,974 + SO0048 0.50 -0.4 54,974 + SO0048 0.50 +0.1 55,075 + SO0048 0.60 -3.4 55,083 - SO0048 0.61 +0.5 55,159 + SO0048 0.68 +1.9 55,164 + SO0048 0.68 +1.6 55,180 - SO0048 0.70 +3.8 55,277 + SO0048 0.79 -1.9 55,277 + SO0048 0.79 -0.2 55,277 + SO0048 0.79 +1.6 55,277 + SO0048 0.79 +1.0 55,285 - SO0048 0.80 +0.7 55,285 - SO0048 0.80 +2.9 55,285 - SO0048 0.80 -2.4 55,285 - SO0048 0.80 -2.0 55,365 - SO0048 0.88 -0.2
Or see this region's nucleotide sequence