Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01290 and PGA1_262p01300 are separated by 156 nucleotides PGA1_262p01300 and PGA1_262p01310 are separated by 125 nucleotides PGA1_262p01310 and PGA1_262p01320 are separated by 47 nucleotides PGA1_262p01320 and PGA1_262p01330 overlap by 14 nucleotides
PGA1_262p01290: PGA1_262p01290 - transcriptional regulator, AraC family, at 139,970 to 140,977
_262p01290
PGA1_262p01300: PGA1_262p01300 - Cupin domain., at 141,134 to 141,574
_262p01300
PGA1_262p01310: PGA1_262p01310 - putative flavin-containing monooxygenase, at 141,700 to 143,187
_262p01310
PGA1_262p01320: PGA1_262p01320 - Uncharacterized protein conserved in bacteria, at 143,235 to 143,936
_262p01320
PGA1_262p01330: PGA1_262p01330 - transcriptional regulator, MarR family, at 143,923 to 144,480
_262p01330
Position (kb) 141
142
143
144 Strain fitness (log2 ratio) -2
-1
0
1 at 140.908 kb on + strand at 140.950 kb on - strand at 140.962 kb on + strand at 140.988 kb on + strand at 141.098 kb on - strand at 141.178 kb on + strand, within PGA1_262p01300 at 141.197 kb on - strand, within PGA1_262p01300 at 141.357 kb on + strand, within PGA1_262p01300 at 141.407 kb on + strand, within PGA1_262p01300 at 141.476 kb on - strand, within PGA1_262p01300 at 141.523 kb on + strand, within PGA1_262p01300 at 141.557 kb on + strand at 141.729 kb on - strand at 141.802 kb on - strand at 141.924 kb on + strand, within PGA1_262p01310 at 141.947 kb on - strand, within PGA1_262p01310 at 142.011 kb on - strand, within PGA1_262p01310 at 142.041 kb on + strand, within PGA1_262p01310 at 142.218 kb on - strand, within PGA1_262p01310 at 142.435 kb on - strand, within PGA1_262p01310 at 142.566 kb on + strand, within PGA1_262p01310 at 142.566 kb on + strand, within PGA1_262p01310 at 142.574 kb on - strand, within PGA1_262p01310 at 142.574 kb on - strand, within PGA1_262p01310 at 143.018 kb on - strand, within PGA1_262p01310 at 143.030 kb on - strand, within PGA1_262p01310 at 143.292 kb on - strand at 143.496 kb on - strand, within PGA1_262p01320 at 143.514 kb on + strand, within PGA1_262p01320 at 143.739 kb on + strand, within PGA1_262p01320 at 143.935 kb on + strand at 144.118 kb on + strand, within PGA1_262p01330
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 140,908 + -2.5 140,950 - -1.0 140,962 + -0.4 140,988 + -1.0 141,098 - +1.0 141,178 + PGA1_262p01300 0.10 -1.0 141,197 - PGA1_262p01300 0.14 +1.0 141,357 + PGA1_262p01300 0.51 -0.2 141,407 + PGA1_262p01300 0.62 -1.8 141,476 - PGA1_262p01300 0.78 -1.1 141,523 + PGA1_262p01300 0.88 -2.2 141,557 + -0.3 141,729 - -0.0 141,802 - +1.6 141,924 + PGA1_262p01310 0.15 +0.2 141,947 - PGA1_262p01310 0.17 -1.5 142,011 - PGA1_262p01310 0.21 +0.6 142,041 + PGA1_262p01310 0.23 -0.4 142,218 - PGA1_262p01310 0.35 -0.1 142,435 - PGA1_262p01310 0.49 +0.8 142,566 + PGA1_262p01310 0.58 +1.0 142,566 + PGA1_262p01310 0.58 +0.5 142,574 - PGA1_262p01310 0.59 -1.2 142,574 - PGA1_262p01310 0.59 -0.0 143,018 - PGA1_262p01310 0.89 +1.7 143,030 - PGA1_262p01310 0.89 +0.4 143,292 - +0.6 143,496 - PGA1_262p01320 0.37 +0.9 143,514 + PGA1_262p01320 0.40 +0.3 143,739 + PGA1_262p01320 0.72 +0.3 143,935 + -0.2 144,118 + PGA1_262p01330 0.35 -0.1
Or see this region's nucleotide sequence