Experiment: 1,4-B-D-Galactobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0803 and BT0804 are separated by 142 nucleotides BT0804 and BT0805 are separated by 156 nucleotides
BT0803: BT0803 - integral membrane efflux pump, putative multidrug-efflux transporter (NCBI ptt file), at 992,326 to 993,384
BT0803
BT0804: BT0804 - putative carbon-nitrogen hydrolase (NCBI ptt file), at 993,527 to 995,065
BT0804
BT0805: BT0805 - conserved hypothetical protein (NCBI ptt file), at 995,222 to 996,271
BT0805
Position (kb) 993
994
995
996 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 992.597 kb on + strand, within BT0803 at 992.627 kb on - strand, within BT0803 at 992.627 kb on - strand, within BT0803 at 992.627 kb on - strand, within BT0803 at 992.631 kb on - strand, within BT0803 at 992.657 kb on + strand, within BT0803 at 992.688 kb on - strand, within BT0803 at 992.703 kb on - strand, within BT0803 at 992.722 kb on - strand, within BT0803 at 992.732 kb on + strand, within BT0803 at 992.895 kb on - strand, within BT0803 at 993.004 kb on + strand, within BT0803 at 993.027 kb on - strand, within BT0803 at 993.142 kb on + strand, within BT0803 at 993.180 kb on - strand, within BT0803 at 993.312 kb on + strand at 993.347 kb on - strand at 993.454 kb on - strand at 993.478 kb on - strand at 993.553 kb on + strand at 993.588 kb on - strand at 993.669 kb on + strand at 993.672 kb on + strand at 993.672 kb on + strand at 993.776 kb on - strand, within BT0804 at 993.780 kb on - strand, within BT0804 at 993.844 kb on + strand, within BT0804 at 993.899 kb on + strand, within BT0804 at 993.899 kb on + strand, within BT0804 at 993.944 kb on - strand, within BT0804 at 993.980 kb on + strand, within BT0804 at 994.010 kb on - strand, within BT0804 at 994.051 kb on + strand, within BT0804 at 994.185 kb on - strand, within BT0804 at 994.222 kb on - strand, within BT0804 at 994.460 kb on - strand, within BT0804 at 994.474 kb on + strand, within BT0804 at 994.513 kb on - strand, within BT0804 at 994.661 kb on + strand, within BT0804 at 994.810 kb on - strand, within BT0804 at 994.852 kb on + strand, within BT0804 at 994.853 kb on - strand, within BT0804 at 994.996 kb on + strand at 995.005 kb on + strand at 995.100 kb on - strand at 995.196 kb on + strand at 995.376 kb on - strand, within BT0805 at 995.436 kb on - strand, within BT0805 at 995.472 kb on + strand, within BT0805 at 995.477 kb on + strand at 995.582 kb on + strand, within BT0805 at 995.582 kb on + strand, within BT0805 at 995.645 kb on + strand, within BT0805 at 995.646 kb on - strand, within BT0805 at 995.680 kb on + strand, within BT0805 at 995.712 kb on - strand, within BT0805 at 995.718 kb on + strand, within BT0805 at 995.719 kb on - strand, within BT0805 at 995.912 kb on + strand, within BT0805 at 995.972 kb on - strand, within BT0805 at 996.045 kb on - strand, within BT0805
Per-strain Table
Position Strand Gene LocusTag Fraction 1,4-B-D-Galactobiose (C) remove 992,597 + BT0803 0.26 -0.2 992,627 - BT0803 0.28 +0.2 992,627 - BT0803 0.28 +1.8 992,627 - BT0803 0.28 -0.2 992,631 - BT0803 0.29 +0.4 992,657 + BT0803 0.31 -0.9 992,688 - BT0803 0.34 +1.4 992,703 - BT0803 0.36 -0.2 992,722 - BT0803 0.37 +0.8 992,732 + BT0803 0.38 -0.2 992,895 - BT0803 0.54 +1.8 993,004 + BT0803 0.64 +0.8 993,027 - BT0803 0.66 -0.2 993,142 + BT0803 0.77 +0.4 993,180 - BT0803 0.81 -0.2 993,312 + +0.4 993,347 - -0.2 993,454 - +0.4 993,478 - +0.5 993,553 + -1.1 993,588 - +0.4 993,669 + -0.1 993,672 + -1.2 993,672 + +1.8 993,776 - BT0804 0.16 -2.1 993,780 - BT0804 0.16 -1.1 993,844 + BT0804 0.21 +1.4 993,899 + BT0804 0.24 -1.1 993,899 + BT0804 0.24 -0.9 993,944 - BT0804 0.27 -0.9 993,980 + BT0804 0.29 -0.6 994,010 - BT0804 0.31 +2.4 994,051 + BT0804 0.34 +0.8 994,185 - BT0804 0.43 +1.4 994,222 - BT0804 0.45 -1.4 994,460 - BT0804 0.61 +1.4 994,474 + BT0804 0.62 -2.1 994,513 - BT0804 0.64 -2.9 994,661 + BT0804 0.74 +0.1 994,810 - BT0804 0.83 +0.4 994,852 + BT0804 0.86 -2.4 994,853 - BT0804 0.86 -1.2 994,996 + -0.1 995,005 + +1.1 995,100 - +0.8 995,196 + +0.4 995,376 - BT0805 0.15 -0.1 995,436 - BT0805 0.20 +0.8 995,472 + BT0805 0.24 -0.3 995,477 + +0.4 995,582 + BT0805 0.34 +0.8 995,582 + BT0805 0.34 -0.2 995,645 + BT0805 0.40 -1.9 995,646 - BT0805 0.40 -1.6 995,680 + BT0805 0.44 -0.2 995,712 - BT0805 0.47 -2.0 995,718 + BT0805 0.47 -4.0 995,719 - BT0805 0.47 +1.0 995,912 + BT0805 0.66 -1.9 995,972 - BT0805 0.71 +0.8 996,045 - BT0805 0.78 -0.4
Or see this region's nucleotide sequence