Experiment: KB with Karanjin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4672 and Psyr_4673 overlap by 4 nucleotides Psyr_4673 and Psyr_4674 overlap by 8 nucleotides Psyr_4674 and Psyr_4675 overlap by 38 nucleotides
Psyr_4672: Psyr_4672 - Coenzyme PQQ synthesis C, at 5,538,337 to 5,539,092
_4672
Psyr_4673: Psyr_4673 - Coenzyme PQQ synthesis D, at 5,539,089 to 5,539,373
_4673
Psyr_4674: Psyr_4674 - Radical SAM, at 5,539,366 to 5,540,535
_4674
Psyr_4675: Psyr_4675 - Peptidase S9, prolyl oligopeptidase active site region, at 5,540,498 to 5,542,324
_4675
Position (kb) 5539
5540
5541 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5538.400 kb on + strand at 5538.400 kb on + strand at 5538.400 kb on + strand at 5538.401 kb on - strand at 5538.401 kb on - strand at 5538.401 kb on - strand at 5538.401 kb on - strand at 5538.403 kb on + strand at 5538.403 kb on + strand at 5538.403 kb on + strand at 5538.403 kb on + strand at 5538.403 kb on + strand at 5538.403 kb on + strand at 5538.404 kb on - strand at 5538.404 kb on - strand at 5538.412 kb on + strand at 5538.412 kb on + strand at 5538.412 kb on + strand at 5538.412 kb on + strand at 5538.412 kb on + strand at 5538.412 kb on + strand at 5538.412 kb on + strand at 5538.412 kb on + strand at 5538.412 kb on + strand at 5538.412 kb on + strand at 5538.412 kb on + strand at 5538.413 kb on - strand, within Psyr_4672 at 5538.413 kb on - strand, within Psyr_4672 at 5538.413 kb on - strand, within Psyr_4672 at 5538.413 kb on - strand, within Psyr_4672 at 5538.413 kb on - strand, within Psyr_4672 at 5538.413 kb on - strand, within Psyr_4672 at 5538.413 kb on - strand, within Psyr_4672 at 5538.436 kb on + strand, within Psyr_4672 at 5538.436 kb on + strand, within Psyr_4672 at 5538.436 kb on + strand, within Psyr_4672 at 5538.436 kb on + strand, within Psyr_4672 at 5538.437 kb on - strand, within Psyr_4672 at 5538.437 kb on - strand, within Psyr_4672 at 5538.437 kb on - strand, within Psyr_4672 at 5538.490 kb on + strand, within Psyr_4672 at 5538.490 kb on + strand, within Psyr_4672 at 5538.490 kb on + strand, within Psyr_4672 at 5538.490 kb on + strand, within Psyr_4672 at 5538.491 kb on - strand, within Psyr_4672 at 5538.491 kb on - strand, within Psyr_4672 at 5538.491 kb on - strand, within Psyr_4672 at 5538.491 kb on - strand, within Psyr_4672 at 5538.491 kb on - strand, within Psyr_4672 at 5538.493 kb on + strand, within Psyr_4672 at 5538.493 kb on + strand, within Psyr_4672 at 5538.494 kb on - strand, within Psyr_4672 at 5538.719 kb on - strand, within Psyr_4672 at 5538.853 kb on + strand, within Psyr_4672 at 5538.853 kb on + strand, within Psyr_4672 at 5538.859 kb on + strand, within Psyr_4672 at 5538.860 kb on - strand, within Psyr_4672 at 5538.860 kb on - strand, within Psyr_4672 at 5538.860 kb on - strand, within Psyr_4672 at 5538.860 kb on - strand, within Psyr_4672 at 5538.860 kb on - strand, within Psyr_4672 at 5538.896 kb on + strand, within Psyr_4672 at 5538.896 kb on + strand, within Psyr_4672 at 5538.896 kb on + strand, within Psyr_4672 at 5538.896 kb on + strand, within Psyr_4672 at 5538.896 kb on + strand, within Psyr_4672 at 5538.896 kb on + strand, within Psyr_4672 at 5538.896 kb on + strand, within Psyr_4672 at 5538.897 kb on - strand, within Psyr_4672 at 5538.897 kb on - strand, within Psyr_4672 at 5538.897 kb on - strand, within Psyr_4672 at 5538.897 kb on - strand, within Psyr_4672 at 5538.920 kb on + strand, within Psyr_4672 at 5538.921 kb on - strand, within Psyr_4672 at 5538.928 kb on + strand, within Psyr_4672 at 5538.928 kb on + strand, within Psyr_4672 at 5538.928 kb on + strand, within Psyr_4672 at 5538.928 kb on + strand, within Psyr_4672 at 5538.928 kb on + strand, within Psyr_4672 at 5538.928 kb on + strand, within Psyr_4672 at 5538.928 kb on + strand, within Psyr_4672 at 5538.929 kb on - strand, within Psyr_4672 at 5538.929 kb on - strand, within Psyr_4672 at 5538.929 kb on - strand, within Psyr_4672 at 5538.929 kb on - strand, within Psyr_4672 at 5538.929 kb on - strand, within Psyr_4672 at 5538.929 kb on - strand, within Psyr_4672 at 5538.929 kb on - strand, within Psyr_4672 at 5538.929 kb on - strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.934 kb on - strand, within Psyr_4672 at 5538.934 kb on - strand, within Psyr_4672 at 5538.934 kb on - strand, within Psyr_4672 at 5538.934 kb on - strand, within Psyr_4672 at 5538.934 kb on - strand, within Psyr_4672 at 5538.934 kb on - strand, within Psyr_4672 at 5538.934 kb on - strand, within Psyr_4672 at 5538.934 kb on - strand, within Psyr_4672 at 5538.934 kb on - strand, within Psyr_4672 at 5538.934 kb on - strand, within Psyr_4672 at 5538.934 kb on - strand, within Psyr_4672 at 5538.934 kb on - strand, within Psyr_4672 at 5538.937 kb on + strand, within Psyr_4672 at 5538.937 kb on + strand, within Psyr_4672 at 5538.937 kb on + strand, within Psyr_4672 at 5538.937 kb on + strand, within Psyr_4672 at 5538.937 kb on + strand, within Psyr_4672 at 5538.938 kb on - strand, within Psyr_4672 at 5538.938 kb on - strand, within Psyr_4672 at 5538.938 kb on - strand, within Psyr_4672 at 5538.955 kb on - strand, within Psyr_4672 at 5538.955 kb on - strand, within Psyr_4672 at 5538.955 kb on - strand, within Psyr_4672 at 5538.955 kb on - strand, within Psyr_4672 at 5538.955 kb on - strand, within Psyr_4672 at 5539.021 kb on + strand at 5539.074 kb on + strand at 5539.088 kb on + strand at 5539.089 kb on - strand at 5539.089 kb on - strand at 5539.089 kb on - strand at 5539.089 kb on - strand at 5539.185 kb on + strand, within Psyr_4673 at 5539.186 kb on - strand, within Psyr_4673 at 5539.376 kb on + strand at 5539.376 kb on + strand at 5539.376 kb on + strand at 5539.376 kb on + strand at 5539.376 kb on + strand at 5539.376 kb on + strand at 5539.377 kb on - strand at 5539.377 kb on - strand at 5539.377 kb on - strand at 5539.377 kb on - strand at 5539.377 kb on - strand at 5539.377 kb on - strand at 5539.377 kb on - strand at 5539.377 kb on - strand at 5539.377 kb on - strand at 5539.377 kb on - strand at 5539.377 kb on - strand at 5539.377 kb on - strand at 5539.399 kb on + strand at 5539.400 kb on - strand at 5539.400 kb on - strand at 5539.456 kb on + strand at 5539.456 kb on + strand at 5539.457 kb on - strand at 5539.457 kb on - strand at 5539.457 kb on - strand at 5539.481 kb on - strand at 5539.660 kb on + strand, within Psyr_4674 at 5539.660 kb on + strand, within Psyr_4674 at 5539.660 kb on + strand, within Psyr_4674 at 5539.966 kb on + strand, within Psyr_4674 at 5539.966 kb on + strand, within Psyr_4674 at 5539.967 kb on - strand, within Psyr_4674 at 5539.967 kb on - strand, within Psyr_4674 at 5539.967 kb on - strand, within Psyr_4674 at 5540.107 kb on + strand, within Psyr_4674 at 5540.107 kb on + strand, within Psyr_4674 at 5540.108 kb on - strand, within Psyr_4674 at 5540.108 kb on - strand, within Psyr_4674 at 5540.111 kb on - strand, within Psyr_4674 at 5540.151 kb on + strand, within Psyr_4674 at 5540.152 kb on - strand, within Psyr_4674 at 5540.261 kb on - strand, within Psyr_4674 at 5540.434 kb on - strand at 5540.434 kb on - strand at 5540.704 kb on - strand, within Psyr_4675 at 5540.717 kb on + strand, within Psyr_4675 at 5540.717 kb on + strand, within Psyr_4675 at 5540.717 kb on + strand, within Psyr_4675 at 5540.717 kb on + strand, within Psyr_4675 at 5540.717 kb on + strand, within Psyr_4675 at 5540.718 kb on - strand, within Psyr_4675 at 5540.718 kb on - strand, within Psyr_4675 at 5540.718 kb on - strand, within Psyr_4675 at 5540.718 kb on - strand, within Psyr_4675 at 5540.718 kb on - strand, within Psyr_4675 at 5540.718 kb on - strand, within Psyr_4675 at 5540.723 kb on + strand, within Psyr_4675 at 5540.792 kb on + strand, within Psyr_4675 at 5540.976 kb on - strand, within Psyr_4675 at 5541.176 kb on + strand, within Psyr_4675 at 5541.176 kb on + strand, within Psyr_4675 at 5541.177 kb on - strand, within Psyr_4675 at 5541.446 kb on + strand, within Psyr_4675 at 5541.447 kb on - strand, within Psyr_4675 at 5541.447 kb on - strand, within Psyr_4675
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Karanjin 10 mM remove 5,538,400 + +0.0 5,538,400 + -0.5 5,538,400 + +0.9 5,538,401 - +1.6 5,538,401 - +0.5 5,538,401 - -0.1 5,538,401 - -0.8 5,538,403 + -0.3 5,538,403 + -0.9 5,538,403 + +1.0 5,538,403 + +0.0 5,538,403 + -0.5 5,538,403 + -0.1 5,538,404 - -0.2 5,538,404 - +0.4 5,538,412 + +0.0 5,538,412 + -0.3 5,538,412 + +0.5 5,538,412 + +0.2 5,538,412 + -0.5 5,538,412 + -0.6 5,538,412 + -0.8 5,538,412 + -0.1 5,538,412 + -0.2 5,538,412 + +0.1 5,538,412 + +0.3 5,538,413 - Psyr_4672 0.10 -0.9 5,538,413 - Psyr_4672 0.10 +0.3 5,538,413 - Psyr_4672 0.10 +0.2 5,538,413 - Psyr_4672 0.10 +0.5 5,538,413 - Psyr_4672 0.10 +0.6 5,538,413 - Psyr_4672 0.10 -0.2 5,538,413 - Psyr_4672 0.10 +0.7 5,538,436 + Psyr_4672 0.13 -0.2 5,538,436 + Psyr_4672 0.13 -0.2 5,538,436 + Psyr_4672 0.13 +0.4 5,538,436 + Psyr_4672 0.13 -0.2 5,538,437 - Psyr_4672 0.13 +0.2 5,538,437 - Psyr_4672 0.13 +2.0 5,538,437 - Psyr_4672 0.13 -0.2 5,538,490 + Psyr_4672 0.20 +3.6 5,538,490 + Psyr_4672 0.20 +0.1 5,538,490 + Psyr_4672 0.20 +0.8 5,538,490 + Psyr_4672 0.20 -0.2 5,538,491 - Psyr_4672 0.20 -1.2 5,538,491 - Psyr_4672 0.20 -1.4 5,538,491 - Psyr_4672 0.20 -0.6 5,538,491 - Psyr_4672 0.20 -0.0 5,538,491 - Psyr_4672 0.20 +2.0 5,538,493 + Psyr_4672 0.21 -0.4 5,538,493 + Psyr_4672 0.21 +0.1 5,538,494 - Psyr_4672 0.21 -0.1 5,538,719 - Psyr_4672 0.51 -0.1 5,538,853 + Psyr_4672 0.68 -0.5 5,538,853 + Psyr_4672 0.68 +0.7 5,538,859 + Psyr_4672 0.69 -1.4 5,538,860 - Psyr_4672 0.69 +0.6 5,538,860 - Psyr_4672 0.69 +1.0 5,538,860 - Psyr_4672 0.69 +0.7 5,538,860 - Psyr_4672 0.69 -0.2 5,538,860 - Psyr_4672 0.69 +0.3 5,538,896 + Psyr_4672 0.74 -0.7 5,538,896 + Psyr_4672 0.74 +0.3 5,538,896 + Psyr_4672 0.74 +0.1 5,538,896 + Psyr_4672 0.74 -0.1 5,538,896 + Psyr_4672 0.74 -0.3 5,538,896 + Psyr_4672 0.74 -0.6 5,538,896 + Psyr_4672 0.74 -1.5 5,538,897 - Psyr_4672 0.74 +1.0 5,538,897 - Psyr_4672 0.74 -0.6 5,538,897 - Psyr_4672 0.74 -0.4 5,538,897 - Psyr_4672 0.74 -1.0 5,538,920 + Psyr_4672 0.77 +1.1 5,538,921 - Psyr_4672 0.77 +0.2 5,538,928 + Psyr_4672 0.78 +0.2 5,538,928 + Psyr_4672 0.78 +0.3 5,538,928 + Psyr_4672 0.78 +0.2 5,538,928 + Psyr_4672 0.78 +0.3 5,538,928 + Psyr_4672 0.78 +0.6 5,538,928 + Psyr_4672 0.78 -0.7 5,538,928 + Psyr_4672 0.78 +2.0 5,538,929 - Psyr_4672 0.78 -0.4 5,538,929 - Psyr_4672 0.78 -0.5 5,538,929 - Psyr_4672 0.78 -0.2 5,538,929 - Psyr_4672 0.78 -0.8 5,538,929 - Psyr_4672 0.78 -0.3 5,538,929 - Psyr_4672 0.78 -2.0 5,538,929 - Psyr_4672 0.78 +1.0 5,538,929 - Psyr_4672 0.78 +0.6 5,538,933 + Psyr_4672 0.79 +0.8 5,538,933 + Psyr_4672 0.79 -0.1 5,538,933 + Psyr_4672 0.79 +0.2 5,538,933 + Psyr_4672 0.79 +0.3 5,538,933 + Psyr_4672 0.79 -1.6 5,538,933 + Psyr_4672 0.79 -0.5 5,538,934 - Psyr_4672 0.79 +0.0 5,538,934 - Psyr_4672 0.79 +1.1 5,538,934 - Psyr_4672 0.79 -0.6 5,538,934 - Psyr_4672 0.79 -2.0 5,538,934 - Psyr_4672 0.79 +0.6 5,538,934 - Psyr_4672 0.79 +1.7 5,538,934 - Psyr_4672 0.79 +0.5 5,538,934 - Psyr_4672 0.79 +0.1 5,538,934 - Psyr_4672 0.79 -0.4 5,538,934 - Psyr_4672 0.79 +0.2 5,538,934 - Psyr_4672 0.79 -0.7 5,538,934 - Psyr_4672 0.79 +0.0 5,538,937 + Psyr_4672 0.79 -0.2 5,538,937 + Psyr_4672 0.79 -0.4 5,538,937 + Psyr_4672 0.79 -0.9 5,538,937 + Psyr_4672 0.79 +0.2 5,538,937 + Psyr_4672 0.79 -0.5 5,538,938 - Psyr_4672 0.79 -1.0 5,538,938 - Psyr_4672 0.79 +0.0 5,538,938 - Psyr_4672 0.79 -0.1 5,538,955 - Psyr_4672 0.82 -1.0 5,538,955 - Psyr_4672 0.82 +0.4 5,538,955 - Psyr_4672 0.82 -1.8 5,538,955 - Psyr_4672 0.82 -0.8 5,538,955 - Psyr_4672 0.82 -0.1 5,539,021 + -0.5 5,539,074 + -0.1 5,539,088 + -0.8 5,539,089 - +0.2 5,539,089 - -0.2 5,539,089 - +0.7 5,539,089 - +2.8 5,539,185 + Psyr_4673 0.34 +0.9 5,539,186 - Psyr_4673 0.34 -0.2 5,539,376 + -0.7 5,539,376 + -0.3 5,539,376 + -0.8 5,539,376 + +0.0 5,539,376 + +0.1 5,539,376 + -0.2 5,539,377 - -1.0 5,539,377 - -0.2 5,539,377 - -0.1 5,539,377 - +0.7 5,539,377 - -0.2 5,539,377 - -0.1 5,539,377 - -0.2 5,539,377 - -0.7 5,539,377 - +0.8 5,539,377 - -0.5 5,539,377 - +0.2 5,539,377 - +0.3 5,539,399 + -0.8 5,539,400 - +0.7 5,539,400 - -1.1 5,539,456 + +0.3 5,539,456 + +0.5 5,539,457 - -0.3 5,539,457 - +0.0 5,539,457 - +0.1 5,539,481 - -0.2 5,539,660 + Psyr_4674 0.25 +0.4 5,539,660 + Psyr_4674 0.25 -0.1 5,539,660 + Psyr_4674 0.25 -1.0 5,539,966 + Psyr_4674 0.51 +0.3 5,539,966 + Psyr_4674 0.51 -0.5 5,539,967 - Psyr_4674 0.51 +0.7 5,539,967 - Psyr_4674 0.51 -0.4 5,539,967 - Psyr_4674 0.51 -0.3 5,540,107 + Psyr_4674 0.63 -0.5 5,540,107 + Psyr_4674 0.63 +0.0 5,540,108 - Psyr_4674 0.63 +0.5 5,540,108 - Psyr_4674 0.63 -0.4 5,540,111 - Psyr_4674 0.64 -1.7 5,540,151 + Psyr_4674 0.67 -0.6 5,540,152 - Psyr_4674 0.67 +0.3 5,540,261 - Psyr_4674 0.76 -0.3 5,540,434 - +0.5 5,540,434 - +0.6 5,540,704 - Psyr_4675 0.11 -0.3 5,540,717 + Psyr_4675 0.12 +1.2 5,540,717 + Psyr_4675 0.12 +0.6 5,540,717 + Psyr_4675 0.12 +1.0 5,540,717 + Psyr_4675 0.12 -0.2 5,540,717 + Psyr_4675 0.12 +0.7 5,540,718 - Psyr_4675 0.12 -0.0 5,540,718 - Psyr_4675 0.12 -0.6 5,540,718 - Psyr_4675 0.12 -0.2 5,540,718 - Psyr_4675 0.12 +0.8 5,540,718 - Psyr_4675 0.12 -0.6 5,540,718 - Psyr_4675 0.12 +0.0 5,540,723 + Psyr_4675 0.12 +0.4 5,540,792 + Psyr_4675 0.16 -1.6 5,540,976 - Psyr_4675 0.26 -2.7 5,541,176 + Psyr_4675 0.37 -0.8 5,541,176 + Psyr_4675 0.37 -1.8 5,541,177 - Psyr_4675 0.37 +0.1 5,541,446 + Psyr_4675 0.52 +0.9 5,541,447 - Psyr_4675 0.52 -0.4 5,541,447 - Psyr_4675 0.52 +0.4
Or see this region's nucleotide sequence