Experiment: KB with Karanjin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3836 and Psyr_3837 are separated by 39 nucleotides Psyr_3837 and Psyr_3838 are separated by 185 nucleotides Psyr_3838 and Psyr_3839 are separated by 171 nucleotides
Psyr_3836: Psyr_3836 - AMP-dependent synthetase and ligase, at 4,571,883 to 4,573,571
_3836
Psyr_3837: Psyr_3837 - conserved hypothetical protein, at 4,573,611 to 4,573,754
_3837
Psyr_3838: Psyr_3838 - MaoC-like dehydratase, at 4,573,940 to 4,574,410
_3838
Psyr_3839: Psyr_3839 - type III helper protein HopAK1, at 4,574,582 to 4,576,213
_3839
Position (kb) 4573
4574 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4572.760 kb on + strand, within Psyr_3836 at 4572.761 kb on - strand, within Psyr_3836 at 4572.770 kb on - strand, within Psyr_3836 at 4572.853 kb on + strand, within Psyr_3836 at 4572.931 kb on + strand, within Psyr_3836 at 4572.932 kb on - strand, within Psyr_3836 at 4573.073 kb on + strand, within Psyr_3836 at 4573.073 kb on + strand, within Psyr_3836 at 4573.074 kb on - strand, within Psyr_3836 at 4573.133 kb on - strand, within Psyr_3836 at 4573.247 kb on - strand, within Psyr_3836 at 4573.247 kb on - strand, within Psyr_3836 at 4573.296 kb on + strand, within Psyr_3836 at 4573.417 kb on + strand at 4573.505 kb on - strand at 4573.505 kb on - strand at 4573.572 kb on + strand at 4573.573 kb on - strand at 4573.595 kb on + strand at 4573.595 kb on + strand at 4573.595 kb on + strand at 4573.595 kb on + strand at 4573.595 kb on + strand at 4573.595 kb on + strand at 4573.596 kb on - strand at 4573.596 kb on - strand at 4573.596 kb on - strand at 4573.596 kb on - strand at 4573.596 kb on - strand at 4573.596 kb on - strand at 4573.596 kb on - strand at 4573.596 kb on - strand at 4573.619 kb on + strand at 4573.620 kb on - strand at 4573.620 kb on - strand at 4573.637 kb on + strand, within Psyr_3837 at 4573.637 kb on + strand, within Psyr_3837 at 4573.638 kb on - strand, within Psyr_3837 at 4573.705 kb on - strand, within Psyr_3837 at 4573.755 kb on + strand at 4573.755 kb on + strand at 4573.755 kb on + strand at 4573.755 kb on + strand at 4573.756 kb on - strand at 4573.756 kb on - strand at 4573.756 kb on - strand at 4573.761 kb on + strand at 4573.762 kb on - strand at 4573.762 kb on - strand at 4573.762 kb on - strand at 4573.762 kb on - strand at 4573.780 kb on + strand at 4573.780 kb on + strand at 4573.783 kb on + strand at 4573.783 kb on + strand at 4573.783 kb on + strand at 4573.784 kb on - strand at 4573.784 kb on - strand at 4573.784 kb on - strand at 4574.588 kb on - strand at 4574.603 kb on + strand at 4574.603 kb on + strand at 4574.603 kb on + strand at 4574.603 kb on + strand at 4574.603 kb on + strand at 4574.603 kb on + strand at 4574.603 kb on + strand at 4574.603 kb on + strand at 4574.603 kb on + strand at 4574.603 kb on + strand at 4574.604 kb on - strand at 4574.604 kb on - strand at 4574.604 kb on - strand at 4574.604 kb on - strand at 4574.695 kb on + strand at 4574.696 kb on - strand at 4574.696 kb on - strand at 4574.696 kb on - strand at 4574.696 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Karanjin 10 mM remove 4,572,760 + Psyr_3836 0.52 -0.9 4,572,761 - Psyr_3836 0.52 -0.0 4,572,770 - Psyr_3836 0.53 +0.2 4,572,853 + Psyr_3836 0.57 -2.0 4,572,931 + Psyr_3836 0.62 +0.6 4,572,932 - Psyr_3836 0.62 -0.1 4,573,073 + Psyr_3836 0.70 -0.1 4,573,073 + Psyr_3836 0.70 +0.5 4,573,074 - Psyr_3836 0.71 -0.1 4,573,133 - Psyr_3836 0.74 -0.7 4,573,247 - Psyr_3836 0.81 -0.4 4,573,247 - Psyr_3836 0.81 +0.9 4,573,296 + Psyr_3836 0.84 -1.0 4,573,417 + +0.9 4,573,505 - +0.3 4,573,505 - +2.2 4,573,572 + +0.4 4,573,573 - +0.2 4,573,595 + -0.1 4,573,595 + -0.6 4,573,595 + -0.1 4,573,595 + +0.9 4,573,595 + +0.9 4,573,595 + +0.7 4,573,596 - +0.4 4,573,596 - -0.8 4,573,596 - -1.1 4,573,596 - +0.4 4,573,596 - +0.3 4,573,596 - -0.2 4,573,596 - +0.7 4,573,596 - +0.3 4,573,619 + +0.9 4,573,620 - -0.4 4,573,620 - -0.5 4,573,637 + Psyr_3837 0.18 -0.6 4,573,637 + Psyr_3837 0.18 -0.1 4,573,638 - Psyr_3837 0.19 -0.8 4,573,705 - Psyr_3837 0.65 -0.1 4,573,755 + +0.0 4,573,755 + +0.3 4,573,755 + +0.2 4,573,755 + -1.5 4,573,756 - +0.7 4,573,756 - -0.8 4,573,756 - +0.4 4,573,761 + -1.7 4,573,762 - -2.1 4,573,762 - +0.7 4,573,762 - -0.1 4,573,762 - +0.0 4,573,780 + -0.2 4,573,780 + -1.5 4,573,783 + -1.6 4,573,783 + +0.3 4,573,783 + -1.0 4,573,784 - -1.1 4,573,784 - -0.7 4,573,784 - +0.4 4,574,588 - +0.7 4,574,603 + -1.5 4,574,603 + +0.6 4,574,603 + +0.6 4,574,603 + -0.2 4,574,603 + -1.6 4,574,603 + +0.0 4,574,603 + +0.0 4,574,603 + -0.8 4,574,603 + -0.1 4,574,603 + +0.0 4,574,604 - +0.6 4,574,604 - -0.2 4,574,604 - -0.2 4,574,604 - +1.4 4,574,695 + +0.4 4,574,696 - +0.3 4,574,696 - -0.3 4,574,696 - -0.0 4,574,696 - -0.1
Or see this region's nucleotide sequence