Experiment: KB with Karanjin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2308 and Psyr_2309 are separated by 63 nucleotides Psyr_2309 and Psyr_2310 are separated by 291 nucleotides Psyr_2310 and Psyr_2311 are separated by 97 nucleotides
Psyr_2308: Psyr_2308 - conserved hypothetical protein, at 2,683,495 to 2,683,698
_2308
Psyr_2309: Psyr_2309 - conserved hypothetical protein, at 2,683,762 to 2,684,304
_2309
Psyr_2310: Psyr_2310 - lipoprotein, putative, at 2,684,596 to 2,684,904
_2310
Psyr_2311: Psyr_2311 - conserved hypothetical protein, at 2,685,002 to 2,685,859
_2311
Position (kb)
2684
2685 Strain fitness (log2 ratio)
-1
0
1
2 at 2683.675 kb on - strand, within Psyr_2308 at 2683.692 kb on + strand at 2683.692 kb on + strand at 2683.692 kb on + strand at 2683.692 kb on + strand at 2683.693 kb on - strand at 2683.928 kb on + strand, within Psyr_2309 at 2683.928 kb on + strand, within Psyr_2309 at 2683.928 kb on + strand, within Psyr_2309 at 2683.929 kb on - strand, within Psyr_2309 at 2683.929 kb on - strand, within Psyr_2309 at 2683.929 kb on - strand, within Psyr_2309 at 2683.929 kb on - strand, within Psyr_2309 at 2683.929 kb on - strand, within Psyr_2309 at 2684.102 kb on + strand, within Psyr_2309 at 2684.112 kb on + strand, within Psyr_2309 at 2684.129 kb on + strand, within Psyr_2309 at 2684.150 kb on + strand, within Psyr_2309 at 2684.150 kb on + strand, within Psyr_2309 at 2684.284 kb on + strand at 2684.284 kb on + strand at 2684.285 kb on - strand at 2684.285 kb on - strand at 2684.309 kb on - strand at 2684.367 kb on - strand at 2684.416 kb on + strand at 2684.417 kb on - strand at 2684.597 kb on + strand at 2684.598 kb on - strand at 2684.654 kb on + strand, within Psyr_2310 at 2684.654 kb on + strand, within Psyr_2310 at 2684.654 kb on + strand, within Psyr_2310 at 2684.654 kb on + strand, within Psyr_2310 at 2684.655 kb on - strand, within Psyr_2310 at 2684.655 kb on - strand, within Psyr_2310 at 2684.655 kb on - strand, within Psyr_2310 at 2684.655 kb on - strand, within Psyr_2310 at 2684.770 kb on + strand, within Psyr_2310 at 2684.771 kb on - strand, within Psyr_2310 at 2684.898 kb on + strand at 2684.899 kb on - strand at 2684.926 kb on + strand at 2684.927 kb on - strand at 2684.927 kb on - strand at 2684.929 kb on - strand at 2684.929 kb on - strand at 2684.954 kb on + strand at 2684.955 kb on - strand at 2685.202 kb on - strand, within Psyr_2311 at 2685.202 kb on - strand, within Psyr_2311 at 2685.202 kb on - strand, within Psyr_2311 at 2685.259 kb on - strand, within Psyr_2311 at 2685.283 kb on - strand, within Psyr_2311 at 2685.339 kb on + strand, within Psyr_2311 at 2685.429 kb on + strand, within Psyr_2311 at 2685.430 kb on - strand, within Psyr_2311 at 2685.430 kb on - strand, within Psyr_2311 at 2685.430 kb on - strand, within Psyr_2311 at 2685.490 kb on - strand, within Psyr_2311 at 2685.703 kb on - strand, within Psyr_2311 at 2685.900 kb on + strand at 2685.900 kb on + strand at 2685.900 kb on + strand at 2685.901 kb on - strand at 2685.901 kb on - strand at 2685.901 kb on - strand at 2685.901 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Karanjin 10 mM remove 2,683,675 - Psyr_2308 0.88 -0.2 2,683,692 + -0.7 2,683,692 + -0.9 2,683,692 + +0.4 2,683,692 + +1.0 2,683,693 - +1.9 2,683,928 + Psyr_2309 0.31 +0.0 2,683,928 + Psyr_2309 0.31 +0.5 2,683,928 + Psyr_2309 0.31 +0.7 2,683,929 - Psyr_2309 0.31 -0.6 2,683,929 - Psyr_2309 0.31 +0.9 2,683,929 - Psyr_2309 0.31 -0.4 2,683,929 - Psyr_2309 0.31 +0.2 2,683,929 - Psyr_2309 0.31 -0.7 2,684,102 + Psyr_2309 0.63 +1.9 2,684,112 + Psyr_2309 0.64 -1.2 2,684,129 + Psyr_2309 0.68 +0.3 2,684,150 + Psyr_2309 0.71 -0.2 2,684,150 + Psyr_2309 0.71 -0.1 2,684,284 + +0.5 2,684,284 + -0.2 2,684,285 - -1.2 2,684,285 - -1.1 2,684,309 - +1.3 2,684,367 - -1.2 2,684,416 + +1.2 2,684,417 - -0.1 2,684,597 + +0.9 2,684,598 - +0.4 2,684,654 + Psyr_2310 0.19 -1.1 2,684,654 + Psyr_2310 0.19 -0.7 2,684,654 + Psyr_2310 0.19 -0.9 2,684,654 + Psyr_2310 0.19 -0.2 2,684,655 - Psyr_2310 0.19 -0.7 2,684,655 - Psyr_2310 0.19 -0.6 2,684,655 - Psyr_2310 0.19 +0.1 2,684,655 - Psyr_2310 0.19 -0.7 2,684,770 + Psyr_2310 0.56 -0.1 2,684,771 - Psyr_2310 0.57 +0.9 2,684,898 + -0.5 2,684,899 - -0.2 2,684,926 + -0.2 2,684,927 - +0.9 2,684,927 - -0.3 2,684,929 - -1.3 2,684,929 - -1.1 2,684,954 + -0.2 2,684,955 - -0.5 2,685,202 - Psyr_2311 0.23 -0.3 2,685,202 - Psyr_2311 0.23 +2.5 2,685,202 - Psyr_2311 0.23 +0.9 2,685,259 - Psyr_2311 0.30 +0.2 2,685,283 - Psyr_2311 0.33 +0.0 2,685,339 + Psyr_2311 0.39 -0.9 2,685,429 + Psyr_2311 0.50 +0.1 2,685,430 - Psyr_2311 0.50 +0.3 2,685,430 - Psyr_2311 0.50 -1.2 2,685,430 - Psyr_2311 0.50 +0.1 2,685,490 - Psyr_2311 0.57 -1.2 2,685,703 - Psyr_2311 0.82 +1.5 2,685,900 + -0.2 2,685,900 + +1.3 2,685,900 + +0.7 2,685,901 - +0.0 2,685,901 - +1.4 2,685,901 - -1.3 2,685,901 - +0.2
Or see this region's nucleotide sequence