Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0194

Experiment: KB with Karanjin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0193 and Psyr_0194 are separated by 235 nucleotidesPsyr_0194 and Psyr_0195 are separated by 15 nucleotidesPsyr_0195 and Psyr_0196 are separated by 3 nucleotides Psyr_0193: Psyr_0193 - transcriptional regulator, AraC family, at 203,917 to 204,834 _0193 Psyr_0194: Psyr_0194 - Short-chain dehydrogenase/reductase SDR, at 205,070 to 205,804 _0194 Psyr_0195: Psyr_0195 - conserved hypothetical protein, at 205,820 to 206,563 _0195 Psyr_0196: Psyr_0196 - conserved hypothetical protein, at 206,567 to 209,947 _0196 Position (kb) 205 206Strain fitness (log2 ratio) -2 -1 0 1 2 3at 204.096 kb on - strand, within Psyr_0193at 204.200 kb on + strand, within Psyr_0193at 204.200 kb on + strand, within Psyr_0193at 204.200 kb on + strand, within Psyr_0193at 204.201 kb on - strand, within Psyr_0193at 204.201 kb on - strand, within Psyr_0193at 204.201 kb on - strand, within Psyr_0193at 204.308 kb on + strand, within Psyr_0193at 204.308 kb on + strand, within Psyr_0193at 204.308 kb on + strand, within Psyr_0193at 204.340 kb on - strand, within Psyr_0193at 204.340 kb on - strand, within Psyr_0193at 204.510 kb on + strand, within Psyr_0193at 204.511 kb on - strand, within Psyr_0193at 204.511 kb on - strand, within Psyr_0193at 204.518 kb on + strand, within Psyr_0193at 204.519 kb on - strand, within Psyr_0193at 204.519 kb on - strand, within Psyr_0193at 204.584 kb on + strand, within Psyr_0193at 204.584 kb on + strand, within Psyr_0193at 204.585 kb on - strand, within Psyr_0193at 204.585 kb on - strand, within Psyr_0193at 204.585 kb on - strand, within Psyr_0193at 204.599 kb on + strand, within Psyr_0193at 204.599 kb on + strand, within Psyr_0193at 204.599 kb on + strand, within Psyr_0193at 204.600 kb on - strand, within Psyr_0193at 204.600 kb on - strand, within Psyr_0193at 204.600 kb on - strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.726 kb on + strand, within Psyr_0193at 204.726 kb on + strand, within Psyr_0193at 204.727 kb on - strand, within Psyr_0193at 204.737 kb on + strand, within Psyr_0193at 204.828 kb on + strandat 204.839 kb on - strandat 204.865 kb on + strandat 204.865 kb on + strandat 204.923 kb on - strandat 204.995 kb on + strandat 204.996 kb on - strandat 205.095 kb on + strandat 205.095 kb on + strandat 205.095 kb on + strandat 205.096 kb on - strandat 205.096 kb on - strandat 205.096 kb on - strandat 205.096 kb on - strandat 205.423 kb on - strand, within Psyr_0194at 205.453 kb on + strand, within Psyr_0194at 205.453 kb on + strand, within Psyr_0194at 205.454 kb on - strand, within Psyr_0194at 205.532 kb on + strand, within Psyr_0194at 205.532 kb on + strand, within Psyr_0194at 205.532 kb on + strand, within Psyr_0194at 205.532 kb on + strand, within Psyr_0194at 205.532 kb on + strand, within Psyr_0194at 205.532 kb on + strand, within Psyr_0194at 205.533 kb on - strand, within Psyr_0194at 205.533 kb on - strand, within Psyr_0194at 205.533 kb on - strand, within Psyr_0194at 205.733 kb on + strandat 205.733 kb on + strandat 205.733 kb on + strandat 205.734 kb on - strandat 205.734 kb on - strandat 205.734 kb on - strandat 205.787 kb on - strandat 205.800 kb on - strandat 205.800 kb on - strandat 205.887 kb on + strandat 205.887 kb on + strandat 205.888 kb on - strandat 205.996 kb on - strand, within Psyr_0195at 205.996 kb on - strand, within Psyr_0195at 206.048 kb on + strand, within Psyr_0195at 206.065 kb on + strand, within Psyr_0195at 206.065 kb on + strand, within Psyr_0195at 206.120 kb on + strand, within Psyr_0195at 206.199 kb on + strand, within Psyr_0195at 206.232 kb on + strand, within Psyr_0195at 206.232 kb on + strand, within Psyr_0195at 206.232 kb on + strand, within Psyr_0195at 206.233 kb on - strand, within Psyr_0195at 206.238 kb on + strand, within Psyr_0195at 206.238 kb on + strand, within Psyr_0195at 206.238 kb on + strand, within Psyr_0195at 206.238 kb on + strand, within Psyr_0195at 206.238 kb on + strand, within Psyr_0195at 206.238 kb on + strand, within Psyr_0195at 206.239 kb on - strand, within Psyr_0195at 206.239 kb on - strand, within Psyr_0195at 206.270 kb on - strand, within Psyr_0195at 206.274 kb on + strand, within Psyr_0195at 206.274 kb on + strand, within Psyr_0195at 206.275 kb on - strand, within Psyr_0195at 206.305 kb on + strand, within Psyr_0195at 206.305 kb on + strand, within Psyr_0195at 206.379 kb on + strand, within Psyr_0195at 206.380 kb on - strand, within Psyr_0195at 206.390 kb on - strand, within Psyr_0195at 206.533 kb on + strandat 206.563 kb on + strandat 206.564 kb on - strandat 206.653 kb on + strandat 206.654 kb on - strandat 206.669 kb on + strandat 206.674 kb on + strandat 206.683 kb on - strandat 206.713 kb on + strandat 206.714 kb on - strandat 206.735 kb on + strandat 206.735 kb on + strandat 206.736 kb on - strandat 206.736 kb on - strandat 206.736 kb on - strandat 206.736 kb on - strandat 206.747 kb on + strandat 206.747 kb on + strandat 206.747 kb on + strandat 206.747 kb on + strandat 206.748 kb on - strandat 206.748 kb on - strandat 206.748 kb on - strandat 206.748 kb on - strandat 206.752 kb on - strandat 206.752 kb on - strandat 206.752 kb on - strandat 206.752 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Karanjin 10 mM
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204,096 - Psyr_0193 0.19 +0.9
204,200 + Psyr_0193 0.31 +0.3
204,200 + Psyr_0193 0.31 -1.2
204,200 + Psyr_0193 0.31 +1.4
204,201 - Psyr_0193 0.31 -0.1
204,201 - Psyr_0193 0.31 -0.4
204,201 - Psyr_0193 0.31 +1.6
204,308 + Psyr_0193 0.43 -0.5
204,308 + Psyr_0193 0.43 -1.7
204,308 + Psyr_0193 0.43 +0.9
204,340 - Psyr_0193 0.46 -0.5
204,340 - Psyr_0193 0.46 -0.3
204,510 + Psyr_0193 0.65 -0.4
204,511 - Psyr_0193 0.65 +0.1
204,511 - Psyr_0193 0.65 +0.1
204,518 + Psyr_0193 0.65 -0.4
204,519 - Psyr_0193 0.66 -0.1
204,519 - Psyr_0193 0.66 -0.3
204,584 + Psyr_0193 0.73 -1.2
204,584 + Psyr_0193 0.73 +1.3
204,585 - Psyr_0193 0.73 -0.8
204,585 - Psyr_0193 0.73 -0.1
204,585 - Psyr_0193 0.73 +0.2
204,599 + Psyr_0193 0.74 -0.2
204,599 + Psyr_0193 0.74 -0.4
204,599 + Psyr_0193 0.74 +0.0
204,600 - Psyr_0193 0.74 -1.0
204,600 - Psyr_0193 0.74 -0.2
204,600 - Psyr_0193 0.74 +0.4
204,605 + Psyr_0193 0.75 -0.4
204,605 + Psyr_0193 0.75 -0.9
204,605 + Psyr_0193 0.75 -0.3
204,605 + Psyr_0193 0.75 +0.2
204,605 + Psyr_0193 0.75 -1.3
204,605 + Psyr_0193 0.75 -0.6
204,605 + Psyr_0193 0.75 +0.3
204,605 + Psyr_0193 0.75 +0.2
204,605 + Psyr_0193 0.75 +0.5
204,605 + Psyr_0193 0.75 +0.7
204,605 + Psyr_0193 0.75 +0.3
204,605 + Psyr_0193 0.75 -0.9
204,606 - Psyr_0193 0.75 -0.5
204,606 - Psyr_0193 0.75 +0.4
204,606 - Psyr_0193 0.75 +0.6
204,606 - Psyr_0193 0.75 +0.2
204,606 - Psyr_0193 0.75 +0.0
204,606 - Psyr_0193 0.75 +1.0
204,606 - Psyr_0193 0.75 +0.1
204,606 - Psyr_0193 0.75 +0.6
204,606 - Psyr_0193 0.75 +0.5
204,606 - Psyr_0193 0.75 -0.3
204,606 - Psyr_0193 0.75 -0.3
204,606 - Psyr_0193 0.75 +0.1
204,606 - Psyr_0193 0.75 -0.1
204,606 - Psyr_0193 0.75 +0.1
204,606 - Psyr_0193 0.75 +0.1
204,606 - Psyr_0193 0.75 -0.1
204,726 + Psyr_0193 0.88 +0.4
204,726 + Psyr_0193 0.88 +0.6
204,727 - Psyr_0193 0.88 +0.3
204,737 + Psyr_0193 0.89 -0.2
204,828 + +0.2
204,839 - +0.4
204,865 + +0.7
204,865 + +0.4
204,923 - -0.1
204,995 + +0.1
204,996 - -0.4
205,095 + -1.1
205,095 + +3.7
205,095 + -0.2
205,096 - +0.5
205,096 - +1.0
205,096 - -0.3
205,096 - -0.1
205,423 - Psyr_0194 0.48 +0.1
205,453 + Psyr_0194 0.52 -2.1
205,453 + Psyr_0194 0.52 +0.3
205,454 - Psyr_0194 0.52 -1.2
205,532 + Psyr_0194 0.63 +0.1
205,532 + Psyr_0194 0.63 +0.3
205,532 + Psyr_0194 0.63 -0.9
205,532 + Psyr_0194 0.63 -0.3
205,532 + Psyr_0194 0.63 +1.1
205,532 + Psyr_0194 0.63 +0.2
205,533 - Psyr_0194 0.63 +0.1
205,533 - Psyr_0194 0.63 +0.9
205,533 - Psyr_0194 0.63 -0.2
205,733 + +0.6
205,733 + -0.2
205,733 + +0.2
205,734 - +0.1
205,734 - +0.1
205,734 - -0.3
205,787 - -0.3
205,800 - -0.5
205,800 - +0.6
205,887 + +0.1
205,887 + -0.1
205,888 - -0.1
205,996 - Psyr_0195 0.24 -0.2
205,996 - Psyr_0195 0.24 -1.3
206,048 + Psyr_0195 0.31 +1.6
206,065 + Psyr_0195 0.33 -0.0
206,065 + Psyr_0195 0.33 -0.8
206,120 + Psyr_0195 0.40 +0.6
206,199 + Psyr_0195 0.51 -1.2
206,232 + Psyr_0195 0.55 -0.9
206,232 + Psyr_0195 0.55 -0.9
206,232 + Psyr_0195 0.55 -0.7
206,233 - Psyr_0195 0.56 -2.4
206,238 + Psyr_0195 0.56 +0.4
206,238 + Psyr_0195 0.56 -1.2
206,238 + Psyr_0195 0.56 -0.4
206,238 + Psyr_0195 0.56 -0.6
206,238 + Psyr_0195 0.56 -0.0
206,238 + Psyr_0195 0.56 +0.5
206,239 - Psyr_0195 0.56 -0.9
206,239 - Psyr_0195 0.56 -2.3
206,270 - Psyr_0195 0.60 -1.3
206,274 + Psyr_0195 0.61 -1.0
206,274 + Psyr_0195 0.61 -1.2
206,275 - Psyr_0195 0.61 -2.3
206,305 + Psyr_0195 0.65 +1.1
206,305 + Psyr_0195 0.65 -1.2
206,379 + Psyr_0195 0.75 -0.9
206,380 - Psyr_0195 0.75 +0.1
206,390 - Psyr_0195 0.77 +0.5
206,533 + -0.4
206,563 + -0.6
206,564 - +1.3
206,653 + -0.7
206,654 - -1.0
206,669 + -0.2
206,674 + +0.1
206,683 - +1.1
206,713 + +2.1
206,714 - -0.6
206,735 + +0.2
206,735 + +0.1
206,736 - -0.7
206,736 - -0.8
206,736 - -1.7
206,736 - -1.7
206,747 + -0.4
206,747 + +0.6
206,747 + -0.4
206,747 + +0.9
206,748 - +0.9
206,748 - -0.6
206,748 - +0.9
206,748 - -0.9
206,752 - +0.8
206,752 - -0.0
206,752 - -0.1
206,752 - -0.0

Or see this region's nucleotide sequence