Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0053

Experiment: KB with Karanjin 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0052 and Psyr_0053 are separated by 46 nucleotidesPsyr_0053 and Psyr_0054 overlap by 4 nucleotides Psyr_0052: Psyr_0052 - ABC transporter, at 52,475 to 54,385 _0052 Psyr_0053: Psyr_0053 - conserved hypothetical protein, at 54,432 to 54,908 _0053 Psyr_0054: Psyr_0054 - alginate regulatory protein AlgR3, at 54,905 to 55,921 _0054 Position (kb) 54 55Strain fitness (log2 ratio) -2 -1 0 1 2at 53.602 kb on - strand, within Psyr_0052at 53.640 kb on + strand, within Psyr_0052at 53.706 kb on + strand, within Psyr_0052at 53.802 kb on + strand, within Psyr_0052at 54.018 kb on + strand, within Psyr_0052at 54.018 kb on + strand, within Psyr_0052at 54.104 kb on + strand, within Psyr_0052at 54.138 kb on + strand, within Psyr_0052at 54.139 kb on - strand, within Psyr_0052at 54.139 kb on - strand, within Psyr_0052at 54.190 kb on + strand, within Psyr_0052at 54.269 kb on - strandat 54.301 kb on + strandat 54.302 kb on - strandat 54.335 kb on + strandat 54.335 kb on + strandat 54.359 kb on + strandat 54.360 kb on - strandat 54.364 kb on + strandat 54.365 kb on - strandat 54.365 kb on - strandat 54.385 kb on + strandat 54.385 kb on + strandat 54.385 kb on + strandat 54.385 kb on + strandat 54.431 kb on + strandat 54.432 kb on - strandat 54.432 kb on - strandat 54.432 kb on - strandat 54.468 kb on + strandat 54.598 kb on + strand, within Psyr_0053at 54.598 kb on + strand, within Psyr_0053at 54.598 kb on + strand, within Psyr_0053at 54.598 kb on + strand, within Psyr_0053at 54.598 kb on + strand, within Psyr_0053at 54.599 kb on - strand, within Psyr_0053at 54.906 kb on + strandat 54.906 kb on + strandat 54.906 kb on + strandat 54.907 kb on - strandat 54.907 kb on - strandat 54.907 kb on - strandat 55.240 kb on + strand, within Psyr_0054at 55.241 kb on - strand, within Psyr_0054at 55.438 kb on + strand, within Psyr_0054at 55.529 kb on - strand, within Psyr_0054at 55.620 kb on + strand, within Psyr_0054at 55.620 kb on + strand, within Psyr_0054at 55.620 kb on + strand, within Psyr_0054at 55.620 kb on + strand, within Psyr_0054at 55.620 kb on + strand, within Psyr_0054at 55.620 kb on + strand, within Psyr_0054at 55.620 kb on + strand, within Psyr_0054at 55.620 kb on + strand, within Psyr_0054at 55.620 kb on + strand, within Psyr_0054at 55.620 kb on + strand, within Psyr_0054at 55.620 kb on + strand, within Psyr_0054at 55.620 kb on + strand, within Psyr_0054at 55.620 kb on + strand, within Psyr_0054at 55.621 kb on - strand, within Psyr_0054at 55.621 kb on - strand, within Psyr_0054at 55.621 kb on - strand, within Psyr_0054at 55.621 kb on - strand, within Psyr_0054at 55.621 kb on - strand, within Psyr_0054at 55.621 kb on - strand, within Psyr_0054at 55.621 kb on - strand, within Psyr_0054at 55.621 kb on - strand, within Psyr_0054at 55.621 kb on - strand, within Psyr_0054at 55.621 kb on - strand, within Psyr_0054at 55.621 kb on - strand, within Psyr_0054at 55.621 kb on - strand, within Psyr_0054at 55.621 kb on - strand, within Psyr_0054at 55.621 kb on - strand, within Psyr_0054at 55.894 kb on + strandat 55.894 kb on + strandat 55.894 kb on + strandat 55.895 kb on - strandat 55.895 kb on - strandat 55.895 kb on - strandat 55.895 kb on - strandat 55.899 kb on - strandat 55.899 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Karanjin 10 mM
remove
53,602 - Psyr_0052 0.59 -1.1
53,640 + Psyr_0052 0.61 -2.4
53,706 + Psyr_0052 0.64 -0.5
53,802 + Psyr_0052 0.69 -0.4
54,018 + Psyr_0052 0.81 -0.4
54,018 + Psyr_0052 0.81 -0.1
54,104 + Psyr_0052 0.85 +0.4
54,138 + Psyr_0052 0.87 +1.2
54,139 - Psyr_0052 0.87 +0.1
54,139 - Psyr_0052 0.87 -0.3
54,190 + Psyr_0052 0.90 -0.2
54,269 - -1.3
54,301 + +0.4
54,302 - -0.6
54,335 + +0.4
54,335 + +0.2
54,359 + -0.5
54,360 - -2.2
54,364 + +1.6
54,365 - +0.8
54,365 - -0.0
54,385 + -0.5
54,385 + +0.1
54,385 + +0.4
54,385 + -0.6
54,431 + +0.2
54,432 - -1.2
54,432 - +0.1
54,432 - +2.2
54,468 + -1.4
54,598 + Psyr_0053 0.35 -0.9
54,598 + Psyr_0053 0.35 -0.7
54,598 + Psyr_0053 0.35 -1.0
54,598 + Psyr_0053 0.35 -1.5
54,598 + Psyr_0053 0.35 +0.6
54,599 - Psyr_0053 0.35 +0.4
54,906 + -0.1
54,906 + +0.1
54,906 + +0.2
54,907 - -0.8
54,907 - -0.8
54,907 - -0.2
55,240 + Psyr_0054 0.33 -0.5
55,241 - Psyr_0054 0.33 +0.1
55,438 + Psyr_0054 0.52 +0.2
55,529 - Psyr_0054 0.61 -0.1
55,620 + Psyr_0054 0.70 -0.9
55,620 + Psyr_0054 0.70 -2.5
55,620 + Psyr_0054 0.70 -2.2
55,620 + Psyr_0054 0.70 -0.1
55,620 + Psyr_0054 0.70 -0.2
55,620 + Psyr_0054 0.70 -2.1
55,620 + Psyr_0054 0.70 -0.6
55,620 + Psyr_0054 0.70 +1.4
55,620 + Psyr_0054 0.70 +0.7
55,620 + Psyr_0054 0.70 +0.9
55,620 + Psyr_0054 0.70 +0.1
55,620 + Psyr_0054 0.70 -0.4
55,620 + Psyr_0054 0.70 +0.3
55,621 - Psyr_0054 0.70 -0.7
55,621 - Psyr_0054 0.70 +0.6
55,621 - Psyr_0054 0.70 +0.1
55,621 - Psyr_0054 0.70 -0.4
55,621 - Psyr_0054 0.70 -0.6
55,621 - Psyr_0054 0.70 -0.7
55,621 - Psyr_0054 0.70 +0.2
55,621 - Psyr_0054 0.70 +1.7
55,621 - Psyr_0054 0.70 +0.3
55,621 - Psyr_0054 0.70 -0.0
55,621 - Psyr_0054 0.70 -1.2
55,621 - Psyr_0054 0.70 -0.0
55,621 - Psyr_0054 0.70 -0.3
55,621 - Psyr_0054 0.70 -1.2
55,894 + +0.2
55,894 + +0.3
55,894 + -1.6
55,895 - +0.1
55,895 - -0.0
55,895 - -0.6
55,895 - -1.0
55,899 - -0.1
55,899 - -0.3

Or see this region's nucleotide sequence