Experiment: KB with Irigenin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4478 and Psyr_4479 are separated by 48 nucleotides Psyr_4479 and Psyr_4480 are separated by 318 nucleotides
Psyr_4478: Psyr_4478 - Alpha/beta hydrolase fold protein, at 5,340,075 to 5,340,893
_4478
Psyr_4479: Psyr_4479 - 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase, at 5,340,942 to 5,341,790
_4479
Psyr_4480: Psyr_4480 - outer membrane transport energization protein TonB, at 5,342,109 to 5,342,918
_4480
Position (kb) 5340
5341
5342 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5339.956 kb on + strand at 5339.957 kb on - strand at 5339.957 kb on - strand at 5339.957 kb on - strand at 5339.957 kb on - strand at 5339.957 kb on - strand at 5339.981 kb on + strand at 5339.982 kb on - strand at 5340.002 kb on + strand at 5340.002 kb on + strand at 5340.002 kb on + strand at 5340.002 kb on + strand at 5340.002 kb on + strand at 5340.002 kb on + strand at 5340.003 kb on - strand at 5340.003 kb on - strand at 5340.003 kb on - strand at 5340.003 kb on - strand at 5340.003 kb on - strand at 5340.036 kb on - strand at 5340.036 kb on - strand at 5340.111 kb on + strand at 5340.111 kb on + strand at 5340.111 kb on + strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.114 kb on + strand at 5340.114 kb on + strand at 5340.114 kb on + strand at 5340.114 kb on + strand at 5340.114 kb on + strand at 5340.114 kb on + strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.198 kb on + strand, within Psyr_4478 at 5340.198 kb on + strand, within Psyr_4478 at 5340.198 kb on + strand, within Psyr_4478 at 5340.282 kb on + strand, within Psyr_4478 at 5340.282 kb on + strand, within Psyr_4478 at 5340.283 kb on - strand, within Psyr_4478 at 5340.283 kb on - strand, within Psyr_4478 at 5340.283 kb on - strand, within Psyr_4478 at 5340.396 kb on + strand, within Psyr_4478 at 5340.396 kb on + strand, within Psyr_4478 at 5340.396 kb on + strand, within Psyr_4478 at 5340.397 kb on - strand, within Psyr_4478 at 5340.397 kb on - strand, within Psyr_4478 at 5340.397 kb on - strand, within Psyr_4478 at 5340.564 kb on + strand, within Psyr_4478 at 5340.565 kb on - strand, within Psyr_4478 at 5340.565 kb on - strand, within Psyr_4478 at 5340.813 kb on + strand at 5340.954 kb on + strand at 5340.999 kb on + strand at 5340.999 kb on + strand at 5340.999 kb on + strand at 5340.999 kb on + strand at 5340.999 kb on + strand at 5340.999 kb on + strand at 5341.000 kb on - strand at 5341.000 kb on - strand at 5341.000 kb on - strand at 5341.000 kb on - strand at 5341.155 kb on - strand, within Psyr_4479 at 5341.155 kb on - strand, within Psyr_4479 at 5341.263 kb on - strand, within Psyr_4479 at 5341.382 kb on - strand, within Psyr_4479 at 5341.552 kb on + strand, within Psyr_4479 at 5341.552 kb on + strand, within Psyr_4479 at 5341.553 kb on - strand, within Psyr_4479 at 5341.553 kb on - strand, within Psyr_4479 at 5341.563 kb on + strand, within Psyr_4479 at 5341.563 kb on + strand, within Psyr_4479 at 5341.564 kb on - strand, within Psyr_4479 at 5341.564 kb on - strand, within Psyr_4479 at 5341.779 kb on + strand at 5341.780 kb on - strand at 5341.878 kb on + strand at 5341.878 kb on + strand at 5341.879 kb on - strand at 5341.879 kb on - strand at 5341.879 kb on - strand at 5341.880 kb on + strand at 5341.880 kb on + strand at 5341.880 kb on + strand at 5341.881 kb on - strand at 5341.881 kb on - strand at 5341.881 kb on - strand at 5341.881 kb on - strand at 5341.909 kb on + strand at 5341.909 kb on + strand at 5341.909 kb on + strand at 5341.909 kb on + strand at 5341.910 kb on - strand at 5341.910 kb on - strand at 5341.910 kb on - strand at 5341.910 kb on - strand at 5341.910 kb on - strand at 5341.933 kb on + strand at 5341.977 kb on - strand at 5342.032 kb on - strand at 5342.034 kb on + strand at 5342.122 kb on + strand at 5342.122 kb on + strand at 5342.123 kb on - strand at 5342.152 kb on + strand at 5342.181 kb on - strand at 5342.685 kb on + strand, within Psyr_4480 at 5342.760 kb on - strand, within Psyr_4480
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Irigenin 10 mM remove 5,339,956 + -0.5 5,339,957 - -0.4 5,339,957 - -0.1 5,339,957 - -0.0 5,339,957 - -1.2 5,339,957 - +1.1 5,339,981 + -0.7 5,339,982 - +0.0 5,340,002 + -0.6 5,340,002 + -0.0 5,340,002 + -0.6 5,340,002 + +0.2 5,340,002 + +0.3 5,340,002 + +1.2 5,340,003 - +0.4 5,340,003 - +0.8 5,340,003 - +1.4 5,340,003 - -0.7 5,340,003 - -2.4 5,340,036 - +0.5 5,340,036 - -1.1 5,340,111 + -0.1 5,340,111 + -1.3 5,340,111 + -0.3 5,340,112 - +0.4 5,340,112 - -0.7 5,340,112 - +0.3 5,340,112 - -0.8 5,340,112 - +1.2 5,340,112 - -1.2 5,340,112 - +1.2 5,340,112 - +0.4 5,340,114 + -0.3 5,340,114 + +1.1 5,340,114 + -0.1 5,340,114 + +0.1 5,340,114 + -0.1 5,340,114 + +0.5 5,340,115 - -0.8 5,340,115 - -1.0 5,340,115 - -0.6 5,340,115 - +0.1 5,340,115 - +1.2 5,340,115 - -0.4 5,340,115 - +0.3 5,340,115 - +0.6 5,340,198 + Psyr_4478 0.15 -2.8 5,340,198 + Psyr_4478 0.15 -0.3 5,340,198 + Psyr_4478 0.15 +1.7 5,340,282 + Psyr_4478 0.25 +0.4 5,340,282 + Psyr_4478 0.25 +0.3 5,340,283 - Psyr_4478 0.25 -0.1 5,340,283 - Psyr_4478 0.25 -0.5 5,340,283 - Psyr_4478 0.25 +0.7 5,340,396 + Psyr_4478 0.39 +0.2 5,340,396 + Psyr_4478 0.39 -0.2 5,340,396 + Psyr_4478 0.39 -1.2 5,340,397 - Psyr_4478 0.39 -0.7 5,340,397 - Psyr_4478 0.39 +0.6 5,340,397 - Psyr_4478 0.39 -0.4 5,340,564 + Psyr_4478 0.60 +0.0 5,340,565 - Psyr_4478 0.60 +0.7 5,340,565 - Psyr_4478 0.60 +1.5 5,340,813 + -1.0 5,340,954 + -0.8 5,340,999 + -0.5 5,340,999 + +0.4 5,340,999 + -0.1 5,340,999 + -0.2 5,340,999 + -0.4 5,340,999 + -0.1 5,341,000 - +1.1 5,341,000 - +0.0 5,341,000 - +0.2 5,341,000 - +0.0 5,341,155 - Psyr_4479 0.25 +0.0 5,341,155 - Psyr_4479 0.25 +1.2 5,341,263 - Psyr_4479 0.38 +0.7 5,341,382 - Psyr_4479 0.52 +0.3 5,341,552 + Psyr_4479 0.72 -0.0 5,341,552 + Psyr_4479 0.72 +1.1 5,341,553 - Psyr_4479 0.72 -0.2 5,341,553 - Psyr_4479 0.72 +0.8 5,341,563 + Psyr_4479 0.73 -1.1 5,341,563 + Psyr_4479 0.73 -0.8 5,341,564 - Psyr_4479 0.73 +0.5 5,341,564 - Psyr_4479 0.73 +1.6 5,341,779 + -1.4 5,341,780 - +0.2 5,341,878 + -1.7 5,341,878 + +0.2 5,341,879 - -0.5 5,341,879 - +0.3 5,341,879 - +0.5 5,341,880 + -0.4 5,341,880 + +0.4 5,341,880 + -0.0 5,341,881 - +0.0 5,341,881 - -0.4 5,341,881 - -2.1 5,341,881 - +1.1 5,341,909 + +0.4 5,341,909 + +1.2 5,341,909 + -0.5 5,341,909 + +0.3 5,341,910 - +1.2 5,341,910 - -1.3 5,341,910 - -0.1 5,341,910 - +1.0 5,341,910 - +0.6 5,341,933 + +1.1 5,341,977 - +0.3 5,342,032 - -0.1 5,342,034 + +0.7 5,342,122 + -0.4 5,342,122 + +0.1 5,342,123 - -0.1 5,342,152 + -0.8 5,342,181 - +1.6 5,342,685 + Psyr_4480 0.71 +1.2 5,342,760 - Psyr_4480 0.80 -0.2
Or see this region's nucleotide sequence