Experiment: KB with Irigenin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4277 and Psyr_4278 are separated by 336 nucleotides Psyr_4278 and Psyr_4279 are separated by 129 nucleotides Psyr_4279 and Psyr_4280 are separated by 91 nucleotides Psyr_4280 and Psyr_4281 are separated by 21 nucleotides
Psyr_4277: Psyr_4277 - Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region, at 5,101,714 to 5,102,490
_4277
Psyr_4278: Psyr_4278 - regulatory protein, LuxR, at 5,102,827 to 5,103,060
_4278
Psyr_4279: Psyr_4279 - 16S rRNA m(2)G 1207 methyltransferase / 23S rRNA m(2)G-1835 methyltransferase, at 5,103,190 to 5,104,314
_4279
Psyr_4280: Psyr_4280 - conserved hypothetical protein, at 5,104,406 to 5,104,573
_4280
Psyr_4281: Psyr_4281 - cytochrome bd quinol oxidase subunit 2 apoprotein, at 5,104,595 to 5,105,602
_4281
Position (kb) 5103
5104
5105 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5102.318 kb on + strand, within Psyr_4277 at 5102.319 kb on - strand, within Psyr_4277 at 5102.319 kb on - strand, within Psyr_4277 at 5102.329 kb on + strand, within Psyr_4277 at 5102.330 kb on - strand, within Psyr_4277 at 5102.330 kb on - strand, within Psyr_4277 at 5102.330 kb on - strand, within Psyr_4277 at 5102.512 kb on + strand at 5102.601 kb on + strand at 5102.601 kb on + strand at 5102.606 kb on + strand at 5102.606 kb on + strand at 5102.606 kb on + strand at 5102.606 kb on + strand at 5102.607 kb on - strand at 5102.607 kb on - strand at 5102.607 kb on - strand at 5102.607 kb on - strand at 5102.607 kb on - strand at 5102.607 kb on - strand at 5102.607 kb on - strand at 5102.765 kb on + strand at 5102.765 kb on + strand at 5102.766 kb on - strand at 5102.766 kb on - strand at 5102.766 kb on - strand at 5102.775 kb on + strand at 5102.775 kb on + strand at 5102.776 kb on - strand at 5102.776 kb on - strand at 5102.785 kb on - strand at 5102.804 kb on + strand at 5102.804 kb on + strand at 5102.804 kb on + strand at 5102.804 kb on + strand at 5102.805 kb on - strand at 5102.805 kb on - strand at 5102.805 kb on - strand at 5102.805 kb on - strand at 5102.805 kb on - strand at 5102.805 kb on - strand at 5102.810 kb on + strand at 5102.810 kb on + strand at 5102.811 kb on - strand at 5102.811 kb on - strand at 5102.811 kb on - strand at 5102.824 kb on + strand at 5102.825 kb on - strand at 5102.825 kb on - strand at 5102.825 kb on - strand at 5102.825 kb on - strand at 5102.843 kb on + strand at 5103.032 kb on + strand, within Psyr_4278 at 5103.032 kb on + strand, within Psyr_4278 at 5103.032 kb on + strand, within Psyr_4278 at 5103.033 kb on - strand, within Psyr_4278 at 5103.108 kb on + strand at 5103.113 kb on - strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.286 kb on + strand at 5103.573 kb on - strand, within Psyr_4279 at 5103.573 kb on - strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.671 kb on + strand, within Psyr_4279 at 5103.671 kb on + strand, within Psyr_4279 at 5103.671 kb on + strand, within Psyr_4279 at 5103.671 kb on + strand, within Psyr_4279 at 5103.672 kb on - strand, within Psyr_4279 at 5103.672 kb on - strand, within Psyr_4279 at 5103.672 kb on - strand, within Psyr_4279 at 5103.672 kb on - strand, within Psyr_4279 at 5103.920 kb on + strand, within Psyr_4279 at 5103.961 kb on + strand, within Psyr_4279 at 5103.962 kb on - strand, within Psyr_4279 at 5103.962 kb on - strand, within Psyr_4279 at 5103.962 kb on - strand, within Psyr_4279 at 5103.962 kb on - strand, within Psyr_4279 at 5104.201 kb on + strand, within Psyr_4279 at 5104.201 kb on + strand, within Psyr_4279 at 5104.201 kb on + strand, within Psyr_4279 at 5104.201 kb on + strand, within Psyr_4279 at 5104.201 kb on + strand, within Psyr_4279 at 5104.201 kb on + strand, within Psyr_4279 at 5104.202 kb on - strand at 5104.202 kb on - strand at 5104.202 kb on - strand at 5104.202 kb on - strand at 5104.202 kb on - strand at 5104.202 kb on - strand at 5104.202 kb on - strand at 5104.596 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.641 kb on + strand at 5104.641 kb on + strand at 5104.641 kb on + strand at 5104.641 kb on + strand at 5104.641 kb on + strand at 5104.641 kb on + strand at 5104.642 kb on - strand at 5104.642 kb on - strand at 5104.642 kb on - strand at 5104.820 kb on + strand, within Psyr_4281 at 5104.820 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Irigenin 10 mM remove 5,102,318 + Psyr_4277 0.78 +0.8 5,102,319 - Psyr_4277 0.78 -0.2 5,102,319 - Psyr_4277 0.78 -0.5 5,102,329 + Psyr_4277 0.79 +0.6 5,102,330 - Psyr_4277 0.79 +1.0 5,102,330 - Psyr_4277 0.79 +0.5 5,102,330 - Psyr_4277 0.79 -0.1 5,102,512 + +0.5 5,102,601 + -0.2 5,102,601 + -0.5 5,102,606 + -0.9 5,102,606 + -0.4 5,102,606 + +0.1 5,102,606 + -0.1 5,102,607 - -0.6 5,102,607 - -1.0 5,102,607 - +0.7 5,102,607 - +1.2 5,102,607 - -0.2 5,102,607 - +0.2 5,102,607 - -0.5 5,102,765 + -0.5 5,102,765 + +1.2 5,102,766 - -0.4 5,102,766 - -0.6 5,102,766 - +0.1 5,102,775 + -0.7 5,102,775 + -0.7 5,102,776 - +0.6 5,102,776 - -0.1 5,102,785 - +0.4 5,102,804 + -0.6 5,102,804 + -0.7 5,102,804 + -0.5 5,102,804 + +0.6 5,102,805 - +0.8 5,102,805 - -0.1 5,102,805 - -1.0 5,102,805 - -0.7 5,102,805 - -0.5 5,102,805 - +0.1 5,102,810 + -1.2 5,102,810 + -0.6 5,102,811 - +0.2 5,102,811 - +0.3 5,102,811 - -0.5 5,102,824 + +0.4 5,102,825 - +0.5 5,102,825 - +0.8 5,102,825 - -0.3 5,102,825 - -0.4 5,102,843 + -1.5 5,103,032 + Psyr_4278 0.88 -0.1 5,103,032 + Psyr_4278 0.88 -0.7 5,103,032 + Psyr_4278 0.88 -1.1 5,103,033 - Psyr_4278 0.88 -0.3 5,103,108 + +0.3 5,103,113 - -0.8 5,103,160 + -0.2 5,103,160 + -0.7 5,103,160 + -0.0 5,103,160 + -1.1 5,103,160 + -0.4 5,103,160 + -0.8 5,103,161 - -0.8 5,103,161 - +0.2 5,103,161 - +0.2 5,103,161 - +0.2 5,103,161 - +0.1 5,103,286 + +0.3 5,103,573 - Psyr_4279 0.34 -0.6 5,103,573 - Psyr_4279 0.34 +0.4 5,103,667 + Psyr_4279 0.42 -1.3 5,103,667 + Psyr_4279 0.42 -0.1 5,103,667 + Psyr_4279 0.42 +0.2 5,103,667 + Psyr_4279 0.42 +0.3 5,103,667 + Psyr_4279 0.42 -0.1 5,103,667 + Psyr_4279 0.42 -1.9 5,103,667 + Psyr_4279 0.42 +0.9 5,103,668 - Psyr_4279 0.42 +0.2 5,103,668 - Psyr_4279 0.42 +0.2 5,103,668 - Psyr_4279 0.42 -0.0 5,103,668 - Psyr_4279 0.42 -0.4 5,103,668 - Psyr_4279 0.42 -0.5 5,103,668 - Psyr_4279 0.42 -0.6 5,103,668 - Psyr_4279 0.42 +0.2 5,103,668 - Psyr_4279 0.42 -0.7 5,103,668 - Psyr_4279 0.42 -1.1 5,103,668 - Psyr_4279 0.42 -1.3 5,103,671 + Psyr_4279 0.43 -0.9 5,103,671 + Psyr_4279 0.43 -1.1 5,103,671 + Psyr_4279 0.43 +0.2 5,103,671 + Psyr_4279 0.43 -1.1 5,103,672 - Psyr_4279 0.43 -1.2 5,103,672 - Psyr_4279 0.43 -1.5 5,103,672 - Psyr_4279 0.43 -0.7 5,103,672 - Psyr_4279 0.43 +0.2 5,103,920 + Psyr_4279 0.65 +0.2 5,103,961 + Psyr_4279 0.69 +1.6 5,103,962 - Psyr_4279 0.69 -0.1 5,103,962 - Psyr_4279 0.69 +1.5 5,103,962 - Psyr_4279 0.69 -0.5 5,103,962 - Psyr_4279 0.69 -1.4 5,104,201 + Psyr_4279 0.90 +0.6 5,104,201 + Psyr_4279 0.90 +0.8 5,104,201 + Psyr_4279 0.90 +0.3 5,104,201 + Psyr_4279 0.90 -0.7 5,104,201 + Psyr_4279 0.90 -0.0 5,104,201 + Psyr_4279 0.90 -0.2 5,104,202 - -0.7 5,104,202 - -0.3 5,104,202 - +0.8 5,104,202 - -1.8 5,104,202 - +0.3 5,104,202 - -0.8 5,104,202 - -0.2 5,104,596 + -0.7 5,104,638 + +0.2 5,104,638 + +1.0 5,104,638 + +0.1 5,104,638 + +0.4 5,104,638 + -0.3 5,104,638 + -0.1 5,104,638 + +0.1 5,104,638 + +0.0 5,104,639 - -0.4 5,104,639 - +1.9 5,104,639 - +0.0 5,104,639 - -1.1 5,104,639 - -0.4 5,104,639 - -0.1 5,104,639 - +0.8 5,104,639 - -0.2 5,104,641 + +0.4 5,104,641 + -1.1 5,104,641 + +0.2 5,104,641 + +0.1 5,104,641 + +0.1 5,104,641 + +0.2 5,104,642 - +0.9 5,104,642 - -0.0 5,104,642 - +0.7 5,104,820 + Psyr_4281 0.22 +1.2 5,104,820 + Psyr_4281 0.22 -0.0 5,104,869 + Psyr_4281 0.27 +0.6 5,104,869 + Psyr_4281 0.27 -0.2 5,104,869 + Psyr_4281 0.27 -0.9 5,104,869 + Psyr_4281 0.27 +0.2 5,104,869 + Psyr_4281 0.27 +0.5 5,104,869 + Psyr_4281 0.27 -1.1 5,104,869 + Psyr_4281 0.27 -0.3 5,104,869 + Psyr_4281 0.27 +0.7 5,104,869 + Psyr_4281 0.27 +0.6 5,104,869 + Psyr_4281 0.27 +0.8 5,104,869 + Psyr_4281 0.27 +0.0 5,104,869 + Psyr_4281 0.27 -0.7 5,104,869 + Psyr_4281 0.27 -0.1 5,104,869 + Psyr_4281 0.27 +1.0 5,104,869 + Psyr_4281 0.27 +0.8 5,104,869 + Psyr_4281 0.27 +0.8 5,104,870 - Psyr_4281 0.27 +0.8 5,104,870 - Psyr_4281 0.27 +0.2 5,104,870 - Psyr_4281 0.27 -0.8 5,104,870 - Psyr_4281 0.27 -0.3 5,104,870 - Psyr_4281 0.27 +0.7 5,104,870 - Psyr_4281 0.27 -0.0 5,104,870 - Psyr_4281 0.27 +0.1 5,104,870 - Psyr_4281 0.27 +1.0 5,104,870 - Psyr_4281 0.27 -0.0 5,104,870 - Psyr_4281 0.27 +0.0 5,104,870 - Psyr_4281 0.27 +1.7 5,104,870 - Psyr_4281 0.27 +0.5 5,104,870 - Psyr_4281 0.27 -0.3 5,104,870 - Psyr_4281 0.27 -0.0 5,104,870 - Psyr_4281 0.27 -0.5 5,104,870 - Psyr_4281 0.27 -0.2 5,104,870 - Psyr_4281 0.27 +1.5 5,104,870 - Psyr_4281 0.27 -1.0 5,104,870 - Psyr_4281 0.27 +1.5 5,104,870 - Psyr_4281 0.27 -0.3 5,104,870 - Psyr_4281 0.27 +0.1 5,104,870 - Psyr_4281 0.27 -1.5 5,104,870 - Psyr_4281 0.27 +0.1 5,104,870 - Psyr_4281 0.27 -0.3 5,104,870 - Psyr_4281 0.27 -0.4 5,104,870 - Psyr_4281 0.27 +0.8 5,104,870 - Psyr_4281 0.27 +0.2 5,105,193 + Psyr_4281 0.59 +0.8 5,105,193 + Psyr_4281 0.59 -0.7 5,105,193 + Psyr_4281 0.59 -0.1 5,105,193 + Psyr_4281 0.59 +1.2 5,105,193 + Psyr_4281 0.59 -0.5 5,105,193 + Psyr_4281 0.59 +0.3 5,105,193 + Psyr_4281 0.59 +0.5 5,105,193 + Psyr_4281 0.59 +0.9 5,105,193 + Psyr_4281 0.59 +0.3 5,105,193 + Psyr_4281 0.59 +1.5 5,105,193 + Psyr_4281 0.59 +1.0 5,105,193 + Psyr_4281 0.59 +0.3 5,105,193 + Psyr_4281 0.59 -0.1 5,105,194 - Psyr_4281 0.59 -0.2 5,105,194 - Psyr_4281 0.59 -0.5 5,105,194 - Psyr_4281 0.59 -0.1 5,105,194 - Psyr_4281 0.59 -0.3 5,105,194 - Psyr_4281 0.59 -0.1 5,105,194 - Psyr_4281 0.59 -2.1 5,105,194 - Psyr_4281 0.59 +1.1 5,105,194 - Psyr_4281 0.59 +1.0 5,105,194 - Psyr_4281 0.59 +1.4 5,105,194 - Psyr_4281 0.59 -0.9 5,105,194 - Psyr_4281 0.59 -1.5
Or see this region's nucleotide sequence