Experiment: KB with Irigenin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3607 and Psyr_3608 are separated by 184 nucleotides Psyr_3608 and Psyr_RNA57 are separated by 131 nucleotides Psyr_RNA57 and Psyr_RNA58 are separated by 4 nucleotides Psyr_RNA58 and Psyr_RNA59 are separated by 100 nucleotides Psyr_RNA59 and Psyr_RNA60 are separated by 2 nucleotides Psyr_RNA60 and Psyr_3609 are separated by 304 nucleotides
Psyr_3607: Psyr_3607 - transcriptional regulator, LysR family, at 4,290,498 to 4,291,406
_3607
Psyr_3608: Psyr_3608 - Pirin, N-terminal, at 4,291,591 to 4,292,313
_3608
Psyr_RNA57: Psyr_RNA57 - tRNA-Gly, at 4,292,445 to 4,292,520
_RNA57
Psyr_RNA58: Psyr_RNA58 - tRNA-Glu, at 4,292,525 to 4,292,600
_RNA58
Psyr_RNA59: Psyr_RNA59 - tRNA-Gly, at 4,292,701 to 4,292,776
_RNA59
Psyr_RNA60: Psyr_RNA60 - tRNA-Glu, at 4,292,779 to 4,292,854
_RNA60
Psyr_3609: Psyr_3609 - conserved hypothetical protein, at 4,293,159 to 4,293,917
_3609
Position (kb) 4291
4292
4293 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4290.697 kb on + strand, within Psyr_3607 at 4290.697 kb on + strand, within Psyr_3607 at 4290.698 kb on - strand, within Psyr_3607 at 4290.698 kb on - strand, within Psyr_3607 at 4290.698 kb on - strand, within Psyr_3607 at 4290.698 kb on - strand, within Psyr_3607 at 4290.747 kb on - strand, within Psyr_3607 at 4290.759 kb on - strand, within Psyr_3607 at 4290.896 kb on - strand, within Psyr_3607 at 4290.913 kb on + strand, within Psyr_3607 at 4290.913 kb on + strand, within Psyr_3607 at 4290.914 kb on - strand, within Psyr_3607 at 4290.914 kb on - strand, within Psyr_3607 at 4290.991 kb on + strand, within Psyr_3607 at 4290.991 kb on + strand, within Psyr_3607 at 4291.044 kb on + strand, within Psyr_3607 at 4291.045 kb on - strand, within Psyr_3607 at 4291.211 kb on - strand, within Psyr_3607 at 4291.211 kb on - strand, within Psyr_3607 at 4291.213 kb on + strand, within Psyr_3607 at 4291.214 kb on - strand, within Psyr_3607 at 4291.214 kb on - strand, within Psyr_3607 at 4291.214 kb on - strand, within Psyr_3607 at 4291.214 kb on - strand, within Psyr_3607 at 4291.368 kb on + strand at 4291.369 kb on - strand at 4291.508 kb on + strand at 4291.508 kb on + strand at 4291.508 kb on + strand at 4291.509 kb on - strand at 4291.542 kb on + strand at 4291.543 kb on - strand at 4291.574 kb on + strand at 4291.575 kb on - strand at 4291.789 kb on + strand, within Psyr_3608 at 4291.789 kb on + strand, within Psyr_3608 at 4291.790 kb on - strand, within Psyr_3608 at 4291.790 kb on - strand, within Psyr_3608 at 4291.790 kb on - strand, within Psyr_3608 at 4291.790 kb on - strand, within Psyr_3608 at 4291.978 kb on + strand, within Psyr_3608 at 4291.978 kb on + strand, within Psyr_3608 at 4291.978 kb on + strand, within Psyr_3608 at 4291.995 kb on + strand, within Psyr_3608 at 4292.086 kb on + strand, within Psyr_3608 at 4292.086 kb on + strand, within Psyr_3608 at 4292.086 kb on + strand, within Psyr_3608 at 4292.087 kb on - strand, within Psyr_3608 at 4292.087 kb on - strand, within Psyr_3608 at 4292.087 kb on - strand, within Psyr_3608 at 4292.149 kb on + strand, within Psyr_3608 at 4292.354 kb on + strand at 4292.354 kb on + strand at 4292.354 kb on + strand at 4292.354 kb on + strand at 4292.354 kb on + strand at 4292.354 kb on + strand at 4292.354 kb on + strand at 4292.355 kb on - strand at 4292.355 kb on - strand at 4292.355 kb on - strand at 4292.355 kb on - strand at 4292.355 kb on - strand at 4292.355 kb on - strand at 4292.355 kb on - strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.356 kb on + strand at 4292.357 kb on - strand at 4292.357 kb on - strand at 4292.357 kb on - strand at 4292.358 kb on + strand at 4292.358 kb on + strand at 4292.358 kb on + strand at 4292.358 kb on + strand at 4292.358 kb on + strand at 4292.358 kb on + strand at 4292.359 kb on - strand at 4292.359 kb on - strand at 4292.359 kb on - strand at 4292.359 kb on - strand at 4292.359 kb on - strand at 4292.861 kb on - strand at 4292.873 kb on - strand at 4292.877 kb on - strand at 4292.877 kb on - strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.043 kb on + strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.044 kb on - strand at 4293.045 kb on + strand at 4293.045 kb on + strand at 4293.046 kb on - strand at 4293.046 kb on - strand at 4293.047 kb on + strand at 4293.047 kb on + strand at 4293.047 kb on + strand at 4293.047 kb on + strand at 4293.047 kb on + strand at 4293.047 kb on + strand at 4293.047 kb on + strand at 4293.047 kb on + strand at 4293.047 kb on + strand at 4293.047 kb on + strand at 4293.047 kb on + strand at 4293.048 kb on - strand at 4293.048 kb on - strand at 4293.048 kb on - strand at 4293.048 kb on - strand at 4293.048 kb on - strand at 4293.048 kb on - strand at 4293.048 kb on - strand at 4293.048 kb on - strand at 4293.048 kb on - strand at 4293.048 kb on - strand at 4293.082 kb on + strand at 4293.082 kb on + strand at 4293.082 kb on + strand at 4293.082 kb on + strand at 4293.082 kb on + strand at 4293.082 kb on + strand at 4293.083 kb on - strand at 4293.083 kb on - strand at 4293.083 kb on - strand at 4293.083 kb on - strand at 4293.083 kb on - strand at 4293.083 kb on - strand at 4293.083 kb on - strand at 4293.083 kb on - strand at 4293.083 kb on - strand at 4293.091 kb on + strand at 4293.105 kb on + strand at 4293.105 kb on + strand at 4293.106 kb on - strand at 4293.123 kb on - strand at 4293.175 kb on + strand at 4293.175 kb on + strand at 4293.176 kb on - strand at 4293.176 kb on - strand at 4293.178 kb on + strand at 4293.178 kb on + strand at 4293.179 kb on - strand at 4293.179 kb on - strand at 4293.179 kb on - strand at 4293.186 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Irigenin 10 mM remove 4,290,697 + Psyr_3607 0.22 +0.4 4,290,697 + Psyr_3607 0.22 -0.8 4,290,698 - Psyr_3607 0.22 +0.1 4,290,698 - Psyr_3607 0.22 +0.4 4,290,698 - Psyr_3607 0.22 +1.3 4,290,698 - Psyr_3607 0.22 +1.0 4,290,747 - Psyr_3607 0.27 +2.3 4,290,759 - Psyr_3607 0.29 -0.2 4,290,896 - Psyr_3607 0.44 -0.1 4,290,913 + Psyr_3607 0.46 -0.8 4,290,913 + Psyr_3607 0.46 +1.5 4,290,914 - Psyr_3607 0.46 +1.2 4,290,914 - Psyr_3607 0.46 -0.1 4,290,991 + Psyr_3607 0.54 -1.3 4,290,991 + Psyr_3607 0.54 -0.4 4,291,044 + Psyr_3607 0.60 +1.3 4,291,045 - Psyr_3607 0.60 +1.1 4,291,211 - Psyr_3607 0.78 -0.0 4,291,211 - Psyr_3607 0.78 -0.4 4,291,213 + Psyr_3607 0.79 -0.2 4,291,214 - Psyr_3607 0.79 +0.6 4,291,214 - Psyr_3607 0.79 +0.6 4,291,214 - Psyr_3607 0.79 -1.0 4,291,214 - Psyr_3607 0.79 +0.1 4,291,368 + +1.4 4,291,369 - +0.6 4,291,508 + +0.4 4,291,508 + +0.1 4,291,508 + -0.2 4,291,509 - -0.5 4,291,542 + -0.5 4,291,543 - -0.0 4,291,574 + +0.6 4,291,575 - -0.1 4,291,789 + Psyr_3608 0.27 -0.7 4,291,789 + Psyr_3608 0.27 +0.5 4,291,790 - Psyr_3608 0.28 -0.7 4,291,790 - Psyr_3608 0.28 +0.2 4,291,790 - Psyr_3608 0.28 +0.3 4,291,790 - Psyr_3608 0.28 +1.9 4,291,978 + Psyr_3608 0.54 +0.1 4,291,978 + Psyr_3608 0.54 +0.5 4,291,978 + Psyr_3608 0.54 -0.0 4,291,995 + Psyr_3608 0.56 +0.8 4,292,086 + Psyr_3608 0.68 +1.3 4,292,086 + Psyr_3608 0.68 +0.1 4,292,086 + Psyr_3608 0.68 +0.4 4,292,087 - Psyr_3608 0.69 +0.6 4,292,087 - Psyr_3608 0.69 +0.6 4,292,087 - Psyr_3608 0.69 +2.6 4,292,149 + Psyr_3608 0.77 +1.1 4,292,354 + +1.6 4,292,354 + -0.1 4,292,354 + -0.7 4,292,354 + +0.4 4,292,354 + -1.4 4,292,354 + -0.9 4,292,354 + +0.4 4,292,355 - +0.1 4,292,355 - +1.6 4,292,355 - -1.2 4,292,355 - +0.2 4,292,355 - -1.9 4,292,355 - +0.1 4,292,355 - -1.0 4,292,356 + -0.9 4,292,356 + +1.1 4,292,356 + +0.4 4,292,356 + +0.4 4,292,356 + -0.4 4,292,356 + -1.1 4,292,356 + -1.6 4,292,356 + -0.5 4,292,356 + -0.5 4,292,356 + +0.8 4,292,356 + +0.2 4,292,357 - +0.2 4,292,357 - -0.7 4,292,357 - -0.4 4,292,358 + +0.3 4,292,358 + +0.3 4,292,358 + -0.2 4,292,358 + +0.1 4,292,358 + -0.6 4,292,358 + -0.9 4,292,359 - -0.1 4,292,359 - -0.1 4,292,359 - +0.2 4,292,359 - -0.9 4,292,359 - -1.1 4,292,861 - -0.5 4,292,873 - -2.3 4,292,877 - -1.8 4,292,877 - +0.3 4,293,043 + +2.9 4,293,043 + -0.7 4,293,043 + -0.5 4,293,043 + +0.7 4,293,043 + +1.2 4,293,043 + -0.7 4,293,043 + +0.1 4,293,043 + -1.0 4,293,043 + -0.5 4,293,044 - -0.3 4,293,044 - -0.3 4,293,044 - -0.9 4,293,044 - -0.5 4,293,044 - -1.1 4,293,044 - -0.7 4,293,044 - +0.5 4,293,044 - -0.4 4,293,044 - +0.7 4,293,044 - +0.3 4,293,044 - +0.6 4,293,044 - +0.3 4,293,044 - +0.1 4,293,044 - -0.7 4,293,044 - +0.4 4,293,044 - +0.1 4,293,044 - +1.2 4,293,044 - +0.3 4,293,044 - -0.2 4,293,045 + -0.5 4,293,045 + -0.6 4,293,046 - -0.8 4,293,046 - -0.2 4,293,047 + -0.3 4,293,047 + -1.6 4,293,047 + +0.7 4,293,047 + -0.5 4,293,047 + +0.2 4,293,047 + +1.4 4,293,047 + -0.7 4,293,047 + +0.5 4,293,047 + +0.6 4,293,047 + -0.9 4,293,047 + -0.4 4,293,048 - +0.1 4,293,048 - -0.7 4,293,048 - +0.2 4,293,048 - +1.1 4,293,048 - +1.5 4,293,048 - +0.0 4,293,048 - -0.3 4,293,048 - +1.1 4,293,048 - +0.2 4,293,048 - +1.5 4,293,082 + +0.2 4,293,082 + +0.4 4,293,082 + -1.0 4,293,082 + +0.8 4,293,082 + +0.3 4,293,082 + -0.7 4,293,083 - +0.1 4,293,083 - -0.0 4,293,083 - -1.4 4,293,083 - +0.9 4,293,083 - +0.2 4,293,083 - -2.6 4,293,083 - -0.2 4,293,083 - -1.2 4,293,083 - +0.2 4,293,091 + -0.6 4,293,105 + +0.1 4,293,105 + +1.1 4,293,106 - +0.1 4,293,123 - -0.4 4,293,175 + +1.1 4,293,175 + -0.6 4,293,176 - -0.4 4,293,176 - -1.3 4,293,178 + +0.1 4,293,178 + -0.4 4,293,179 - -0.9 4,293,179 - +0.3 4,293,179 - +2.3 4,293,186 - +1.6
Or see this region's nucleotide sequence