Experiment: KB with Irigenin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2742 and Psyr_2743 are separated by 24 nucleotides Psyr_2743 and Psyr_2744 are separated by 15 nucleotides Psyr_2744 and Psyr_2745 are separated by 5 nucleotides
Psyr_2742: Psyr_2742 - Iron-containing alcohol dehydrogenase, at 3,328,127 to 3,329,281
_2742
Psyr_2743: Psyr_2743 - Lysine exporter protein (LYSE/YGGA), at 3,329,306 to 3,329,950
_2743
Psyr_2744: Psyr_2744 - conserved hypothetical protein, at 3,329,966 to 3,331,708
_2744
Psyr_2745: Psyr_2745 - Pyridoxal-5'-phosphate-dependent enzyme, beta subunit:Ornithine cyclodeaminase/mu-crystallin, at 3,331,714 to 3,333,771
_2745
Position (kb) 3329
3330
3331
3332 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3329.031 kb on + strand, within Psyr_2742 at 3329.031 kb on + strand, within Psyr_2742 at 3329.032 kb on - strand, within Psyr_2742 at 3329.144 kb on - strand, within Psyr_2742 at 3329.189 kb on + strand at 3329.189 kb on + strand at 3329.189 kb on + strand at 3329.189 kb on + strand at 3329.189 kb on + strand at 3329.189 kb on + strand at 3329.190 kb on - strand at 3329.190 kb on - strand at 3329.190 kb on - strand at 3329.190 kb on - strand at 3329.190 kb on - strand at 3329.190 kb on - strand at 3329.190 kb on - strand at 3329.288 kb on - strand at 3329.295 kb on + strand at 3329.410 kb on - strand, within Psyr_2743 at 3329.490 kb on - strand, within Psyr_2743 at 3329.553 kb on + strand at 3329.553 kb on + strand, within Psyr_2743 at 3329.553 kb on + strand, within Psyr_2743 at 3329.554 kb on - strand, within Psyr_2743 at 3329.554 kb on - strand, within Psyr_2743 at 3329.604 kb on + strand, within Psyr_2743 at 3329.704 kb on - strand, within Psyr_2743 at 3329.950 kb on + strand at 3329.950 kb on + strand at 3329.953 kb on + strand at 3330.105 kb on + strand at 3330.105 kb on + strand at 3330.106 kb on - strand at 3330.106 kb on - strand at 3330.114 kb on + strand at 3330.114 kb on + strand at 3330.462 kb on + strand, within Psyr_2744 at 3330.631 kb on - strand, within Psyr_2744 at 3331.023 kb on + strand, within Psyr_2744 at 3331.057 kb on - strand, within Psyr_2744 at 3331.326 kb on + strand, within Psyr_2744 at 3331.341 kb on + strand, within Psyr_2744 at 3331.342 kb on - strand, within Psyr_2744 at 3331.433 kb on + strand, within Psyr_2744 at 3331.433 kb on + strand, within Psyr_2744 at 3331.433 kb on + strand, within Psyr_2744 at 3331.434 kb on - strand, within Psyr_2744 at 3331.434 kb on - strand, within Psyr_2744 at 3331.543 kb on - strand at 3331.919 kb on + strand at 3332.071 kb on + strand, within Psyr_2745 at 3332.071 kb on + strand, within Psyr_2745 at 3332.071 kb on + strand, within Psyr_2745 at 3332.072 kb on - strand, within Psyr_2745 at 3332.072 kb on - strand, within Psyr_2745 at 3332.075 kb on + strand, within Psyr_2745 at 3332.075 kb on + strand, within Psyr_2745 at 3332.076 kb on - strand, within Psyr_2745 at 3332.076 kb on - strand, within Psyr_2745 at 3332.091 kb on + strand, within Psyr_2745 at 3332.579 kb on + strand, within Psyr_2745 at 3332.580 kb on - strand, within Psyr_2745 at 3332.580 kb on - strand, within Psyr_2745 at 3332.621 kb on + strand, within Psyr_2745 at 3332.621 kb on + strand, within Psyr_2745 at 3332.622 kb on - strand, within Psyr_2745 at 3332.622 kb on - strand, within Psyr_2745 at 3332.622 kb on - strand, within Psyr_2745 at 3332.643 kb on + strand, within Psyr_2745 at 3332.644 kb on - strand, within Psyr_2745
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Irigenin 10 mM remove 3,329,031 + Psyr_2742 0.78 +0.1 3,329,031 + Psyr_2742 0.78 +0.0 3,329,032 - Psyr_2742 0.78 +0.6 3,329,144 - Psyr_2742 0.88 +0.4 3,329,189 + -0.3 3,329,189 + +0.2 3,329,189 + -0.8 3,329,189 + +0.7 3,329,189 + +1.8 3,329,189 + +3.0 3,329,190 - -0.1 3,329,190 - +0.4 3,329,190 - -0.9 3,329,190 - -0.0 3,329,190 - +1.2 3,329,190 - +0.3 3,329,190 - -0.4 3,329,288 - -1.4 3,329,295 + +0.2 3,329,410 - Psyr_2743 0.16 -0.3 3,329,490 - Psyr_2743 0.29 +0.2 3,329,553 + -0.6 3,329,553 + Psyr_2743 0.38 -2.5 3,329,553 + Psyr_2743 0.38 +0.6 3,329,554 - Psyr_2743 0.38 -0.6 3,329,554 - Psyr_2743 0.38 +1.0 3,329,604 + Psyr_2743 0.46 -0.4 3,329,704 - Psyr_2743 0.62 +1.9 3,329,950 + -0.9 3,329,950 + +0.5 3,329,953 + +1.2 3,330,105 + +0.0 3,330,105 + -0.1 3,330,106 - +0.6 3,330,106 - +0.4 3,330,114 + -0.4 3,330,114 + -0.1 3,330,462 + Psyr_2744 0.28 -0.2 3,330,631 - Psyr_2744 0.38 +0.4 3,331,023 + Psyr_2744 0.61 +1.3 3,331,057 - Psyr_2744 0.63 +1.0 3,331,326 + Psyr_2744 0.78 -0.9 3,331,341 + Psyr_2744 0.79 +0.8 3,331,342 - Psyr_2744 0.79 -0.1 3,331,433 + Psyr_2744 0.84 +0.7 3,331,433 + Psyr_2744 0.84 +0.5 3,331,433 + Psyr_2744 0.84 -0.2 3,331,434 - Psyr_2744 0.84 +1.2 3,331,434 - Psyr_2744 0.84 -0.2 3,331,543 - -0.1 3,331,919 + +1.2 3,332,071 + Psyr_2745 0.17 -0.5 3,332,071 + Psyr_2745 0.17 +1.2 3,332,071 + Psyr_2745 0.17 +0.1 3,332,072 - Psyr_2745 0.17 +0.2 3,332,072 - Psyr_2745 0.17 -0.1 3,332,075 + Psyr_2745 0.18 -0.3 3,332,075 + Psyr_2745 0.18 +1.2 3,332,076 - Psyr_2745 0.18 +0.5 3,332,076 - Psyr_2745 0.18 +1.2 3,332,091 + Psyr_2745 0.18 +0.0 3,332,579 + Psyr_2745 0.42 -0.8 3,332,580 - Psyr_2745 0.42 +0.4 3,332,580 - Psyr_2745 0.42 -0.3 3,332,621 + Psyr_2745 0.44 +0.6 3,332,621 + Psyr_2745 0.44 +1.9 3,332,622 - Psyr_2745 0.44 -0.2 3,332,622 - Psyr_2745 0.44 +0.5 3,332,622 - Psyr_2745 0.44 +0.3 3,332,643 + Psyr_2745 0.45 +1.8 3,332,644 - Psyr_2745 0.45 +0.8
Or see this region's nucleotide sequence