Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2241

Experiment: KB with Irigenin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2240 and Psyr_2241 are separated by 162 nucleotidesPsyr_2241 and Psyr_2242 are separated by 185 nucleotidesPsyr_2242 and Psyr_2243 are separated by 7 nucleotidesPsyr_2243 and Psyr_2244 are separated by 63 nucleotides Psyr_2240: Psyr_2240 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 2,603,604 to 2,605,217 _2240 Psyr_2241: Psyr_2241 - methyl-accepting chemotaxis sensory transducer, at 2,605,380 to 2,607,176 _2241 Psyr_2242: Psyr_2242 - conserved hypothetical protein, at 2,607,362 to 2,607,667 _2242 Psyr_2243: Psyr_2243 - Endoribonuclease L-PSP, at 2,607,675 to 2,608,076 _2243 Psyr_2244: Psyr_2244 - DNA topoisomerase III, at 2,608,140 to 2,610,110 _2244 Position (kb) 2605 2606 2607 2608Strain fitness (log2 ratio) -2 -1 0 1 2at 2604.525 kb on - strand, within Psyr_2240at 2604.710 kb on + strand, within Psyr_2240at 2604.713 kb on + strand, within Psyr_2240at 2605.007 kb on + strand, within Psyr_2240at 2605.007 kb on + strand, within Psyr_2240at 2605.007 kb on + strand, within Psyr_2240at 2605.008 kb on - strand, within Psyr_2240at 2605.093 kb on + strandat 2605.093 kb on + strandat 2605.241 kb on + strandat 2605.242 kb on - strandat 2605.390 kb on + strandat 2605.401 kb on + strandat 2605.488 kb on + strandat 2605.506 kb on - strandat 2605.653 kb on + strand, within Psyr_2241at 2605.653 kb on + strand, within Psyr_2241at 2605.653 kb on + strand, within Psyr_2241at 2605.654 kb on - strand, within Psyr_2241at 2606.165 kb on + strand, within Psyr_2241at 2606.272 kb on + strand, within Psyr_2241at 2606.272 kb on + strand, within Psyr_2241at 2606.273 kb on - strand, within Psyr_2241at 2606.273 kb on - strand, within Psyr_2241at 2606.548 kb on - strand, within Psyr_2241at 2606.685 kb on - strand, within Psyr_2241at 2606.769 kb on + strand, within Psyr_2241at 2606.769 kb on + strand, within Psyr_2241at 2606.769 kb on + strand, within Psyr_2241at 2606.770 kb on - strand, within Psyr_2241at 2606.770 kb on - strand, within Psyr_2241at 2606.770 kb on - strand, within Psyr_2241at 2606.770 kb on - strand, within Psyr_2241at 2606.770 kb on - strand, within Psyr_2241at 2606.802 kb on + strand, within Psyr_2241at 2606.803 kb on - strand, within Psyr_2241at 2606.803 kb on - strand, within Psyr_2241at 2606.803 kb on - strand, within Psyr_2241at 2607.061 kb on - strandat 2607.061 kb on - strandat 2607.061 kb on - strandat 2607.061 kb on - strandat 2607.174 kb on + strandat 2607.174 kb on + strandat 2607.223 kb on - strandat 2607.223 kb on - strandat 2607.223 kb on - strandat 2607.246 kb on + strandat 2607.246 kb on + strandat 2607.247 kb on - strandat 2607.247 kb on - strandat 2607.247 kb on - strandat 2607.307 kb on - strandat 2607.390 kb on + strandat 2607.390 kb on + strandat 2607.390 kb on + strandat 2607.390 kb on + strandat 2607.391 kb on - strandat 2607.391 kb on - strandat 2607.391 kb on - strandat 2607.391 kb on - strandat 2607.391 kb on - strandat 2607.443 kb on + strand, within Psyr_2242at 2607.443 kb on + strand, within Psyr_2242at 2607.443 kb on + strand, within Psyr_2242at 2607.443 kb on + strand, within Psyr_2242at 2607.444 kb on - strand, within Psyr_2242at 2607.444 kb on - strand, within Psyr_2242at 2607.444 kb on - strand, within Psyr_2242at 2607.645 kb on + strandat 2607.666 kb on - strandat 2607.838 kb on + strand, within Psyr_2243at 2607.838 kb on + strand, within Psyr_2243at 2607.838 kb on + strand, within Psyr_2243at 2607.839 kb on - strand, within Psyr_2243at 2607.839 kb on - strand, within Psyr_2243at 2607.959 kb on + strand, within Psyr_2243at 2607.960 kb on - strand, within Psyr_2243at 2607.960 kb on - strand, within Psyr_2243at 2608.015 kb on + strand, within Psyr_2243at 2608.081 kb on + strandat 2608.081 kb on + strandat 2608.082 kb on - strandat 2608.082 kb on - strandat 2608.082 kb on - strandat 2608.141 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Irigenin 10 mM
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2,604,525 - Psyr_2240 0.57 +0.4
2,604,710 + Psyr_2240 0.69 +0.2
2,604,713 + Psyr_2240 0.69 +2.4
2,605,007 + Psyr_2240 0.87 +0.1
2,605,007 + Psyr_2240 0.87 -1.9
2,605,007 + Psyr_2240 0.87 -0.5
2,605,008 - Psyr_2240 0.87 -0.9
2,605,093 + -0.3
2,605,093 + +0.6
2,605,241 + +0.5
2,605,242 - -0.9
2,605,390 + +1.8
2,605,401 + +0.1
2,605,488 + +0.1
2,605,506 - +0.6
2,605,653 + Psyr_2241 0.15 +0.8
2,605,653 + Psyr_2241 0.15 -1.1
2,605,653 + Psyr_2241 0.15 -0.7
2,605,654 - Psyr_2241 0.15 -1.1
2,606,165 + Psyr_2241 0.44 -0.6
2,606,272 + Psyr_2241 0.50 +0.2
2,606,272 + Psyr_2241 0.50 -1.0
2,606,273 - Psyr_2241 0.50 +0.2
2,606,273 - Psyr_2241 0.50 -0.7
2,606,548 - Psyr_2241 0.65 -0.6
2,606,685 - Psyr_2241 0.73 -1.3
2,606,769 + Psyr_2241 0.77 -0.9
2,606,769 + Psyr_2241 0.77 -0.0
2,606,769 + Psyr_2241 0.77 -1.5
2,606,770 - Psyr_2241 0.77 -0.5
2,606,770 - Psyr_2241 0.77 -0.4
2,606,770 - Psyr_2241 0.77 -0.1
2,606,770 - Psyr_2241 0.77 -0.4
2,606,770 - Psyr_2241 0.77 -0.2
2,606,802 + Psyr_2241 0.79 -0.1
2,606,803 - Psyr_2241 0.79 -1.2
2,606,803 - Psyr_2241 0.79 -0.5
2,606,803 - Psyr_2241 0.79 -0.4
2,607,061 - +0.4
2,607,061 - +1.1
2,607,061 - +2.3
2,607,061 - +0.3
2,607,174 + +1.0
2,607,174 + +1.5
2,607,223 - -0.9
2,607,223 - +0.3
2,607,223 - -2.4
2,607,246 + +0.1
2,607,246 + -0.4
2,607,247 - +0.0
2,607,247 - -0.1
2,607,247 - +1.7
2,607,307 - +0.1
2,607,390 + +0.9
2,607,390 + -0.6
2,607,390 + +1.3
2,607,390 + -0.9
2,607,391 - -0.9
2,607,391 - -0.1
2,607,391 - +0.6
2,607,391 - +0.0
2,607,391 - +2.0
2,607,443 + Psyr_2242 0.26 -0.5
2,607,443 + Psyr_2242 0.26 +0.5
2,607,443 + Psyr_2242 0.26 +0.3
2,607,443 + Psyr_2242 0.26 -0.2
2,607,444 - Psyr_2242 0.27 -0.1
2,607,444 - Psyr_2242 0.27 +1.8
2,607,444 - Psyr_2242 0.27 +0.3
2,607,645 + -0.9
2,607,666 - -0.8
2,607,838 + Psyr_2243 0.41 -0.8
2,607,838 + Psyr_2243 0.41 +0.7
2,607,838 + Psyr_2243 0.41 +0.4
2,607,839 - Psyr_2243 0.41 -0.3
2,607,839 - Psyr_2243 0.41 +0.5
2,607,959 + Psyr_2243 0.71 -0.8
2,607,960 - Psyr_2243 0.71 -1.7
2,607,960 - Psyr_2243 0.71 -0.4
2,608,015 + Psyr_2243 0.85 -0.7
2,608,081 + -1.0
2,608,081 + +0.1
2,608,082 - +0.3
2,608,082 - -0.1
2,608,082 - -0.5
2,608,141 + +0.3

Or see this region's nucleotide sequence