Experiment: KB with Irigenin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2240 and Psyr_2241 are separated by 162 nucleotides Psyr_2241 and Psyr_2242 are separated by 185 nucleotides Psyr_2242 and Psyr_2243 are separated by 7 nucleotides Psyr_2243 and Psyr_2244 are separated by 63 nucleotides
Psyr_2240: Psyr_2240 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 2,603,604 to 2,605,217
_2240
Psyr_2241: Psyr_2241 - methyl-accepting chemotaxis sensory transducer, at 2,605,380 to 2,607,176
_2241
Psyr_2242: Psyr_2242 - conserved hypothetical protein, at 2,607,362 to 2,607,667
_2242
Psyr_2243: Psyr_2243 - Endoribonuclease L-PSP, at 2,607,675 to 2,608,076
_2243
Psyr_2244: Psyr_2244 - DNA topoisomerase III, at 2,608,140 to 2,610,110
_2244
Position (kb)
2605
2606
2607
2608 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2604.525 kb on - strand, within Psyr_2240 at 2604.710 kb on + strand, within Psyr_2240 at 2604.713 kb on + strand, within Psyr_2240 at 2605.007 kb on + strand, within Psyr_2240 at 2605.007 kb on + strand, within Psyr_2240 at 2605.007 kb on + strand, within Psyr_2240 at 2605.008 kb on - strand, within Psyr_2240 at 2605.093 kb on + strand at 2605.093 kb on + strand at 2605.241 kb on + strand at 2605.242 kb on - strand at 2605.390 kb on + strand at 2605.401 kb on + strand at 2605.488 kb on + strand at 2605.506 kb on - strand at 2605.653 kb on + strand, within Psyr_2241 at 2605.653 kb on + strand, within Psyr_2241 at 2605.653 kb on + strand, within Psyr_2241 at 2605.654 kb on - strand, within Psyr_2241 at 2606.165 kb on + strand, within Psyr_2241 at 2606.272 kb on + strand, within Psyr_2241 at 2606.272 kb on + strand, within Psyr_2241 at 2606.273 kb on - strand, within Psyr_2241 at 2606.273 kb on - strand, within Psyr_2241 at 2606.548 kb on - strand, within Psyr_2241 at 2606.685 kb on - strand, within Psyr_2241 at 2606.769 kb on + strand, within Psyr_2241 at 2606.769 kb on + strand, within Psyr_2241 at 2606.769 kb on + strand, within Psyr_2241 at 2606.770 kb on - strand, within Psyr_2241 at 2606.770 kb on - strand, within Psyr_2241 at 2606.770 kb on - strand, within Psyr_2241 at 2606.770 kb on - strand, within Psyr_2241 at 2606.770 kb on - strand, within Psyr_2241 at 2606.802 kb on + strand, within Psyr_2241 at 2606.803 kb on - strand, within Psyr_2241 at 2606.803 kb on - strand, within Psyr_2241 at 2606.803 kb on - strand, within Psyr_2241 at 2607.061 kb on - strand at 2607.061 kb on - strand at 2607.061 kb on - strand at 2607.061 kb on - strand at 2607.174 kb on + strand at 2607.174 kb on + strand at 2607.223 kb on - strand at 2607.223 kb on - strand at 2607.223 kb on - strand at 2607.246 kb on + strand at 2607.246 kb on + strand at 2607.247 kb on - strand at 2607.247 kb on - strand at 2607.247 kb on - strand at 2607.307 kb on - strand at 2607.390 kb on + strand at 2607.390 kb on + strand at 2607.390 kb on + strand at 2607.390 kb on + strand at 2607.391 kb on - strand at 2607.391 kb on - strand at 2607.391 kb on - strand at 2607.391 kb on - strand at 2607.391 kb on - strand at 2607.443 kb on + strand, within Psyr_2242 at 2607.443 kb on + strand, within Psyr_2242 at 2607.443 kb on + strand, within Psyr_2242 at 2607.443 kb on + strand, within Psyr_2242 at 2607.444 kb on - strand, within Psyr_2242 at 2607.444 kb on - strand, within Psyr_2242 at 2607.444 kb on - strand, within Psyr_2242 at 2607.645 kb on + strand at 2607.666 kb on - strand at 2607.838 kb on + strand, within Psyr_2243 at 2607.838 kb on + strand, within Psyr_2243 at 2607.838 kb on + strand, within Psyr_2243 at 2607.839 kb on - strand, within Psyr_2243 at 2607.839 kb on - strand, within Psyr_2243 at 2607.959 kb on + strand, within Psyr_2243 at 2607.960 kb on - strand, within Psyr_2243 at 2607.960 kb on - strand, within Psyr_2243 at 2608.015 kb on + strand, within Psyr_2243 at 2608.081 kb on + strand at 2608.081 kb on + strand at 2608.082 kb on - strand at 2608.082 kb on - strand at 2608.082 kb on - strand at 2608.141 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Irigenin 10 mM remove 2,604,525 - Psyr_2240 0.57 +0.4 2,604,710 + Psyr_2240 0.69 +0.2 2,604,713 + Psyr_2240 0.69 +2.4 2,605,007 + Psyr_2240 0.87 +0.1 2,605,007 + Psyr_2240 0.87 -1.9 2,605,007 + Psyr_2240 0.87 -0.5 2,605,008 - Psyr_2240 0.87 -0.9 2,605,093 + -0.3 2,605,093 + +0.6 2,605,241 + +0.5 2,605,242 - -0.9 2,605,390 + +1.8 2,605,401 + +0.1 2,605,488 + +0.1 2,605,506 - +0.6 2,605,653 + Psyr_2241 0.15 +0.8 2,605,653 + Psyr_2241 0.15 -1.1 2,605,653 + Psyr_2241 0.15 -0.7 2,605,654 - Psyr_2241 0.15 -1.1 2,606,165 + Psyr_2241 0.44 -0.6 2,606,272 + Psyr_2241 0.50 +0.2 2,606,272 + Psyr_2241 0.50 -1.0 2,606,273 - Psyr_2241 0.50 +0.2 2,606,273 - Psyr_2241 0.50 -0.7 2,606,548 - Psyr_2241 0.65 -0.6 2,606,685 - Psyr_2241 0.73 -1.3 2,606,769 + Psyr_2241 0.77 -0.9 2,606,769 + Psyr_2241 0.77 -0.0 2,606,769 + Psyr_2241 0.77 -1.5 2,606,770 - Psyr_2241 0.77 -0.5 2,606,770 - Psyr_2241 0.77 -0.4 2,606,770 - Psyr_2241 0.77 -0.1 2,606,770 - Psyr_2241 0.77 -0.4 2,606,770 - Psyr_2241 0.77 -0.2 2,606,802 + Psyr_2241 0.79 -0.1 2,606,803 - Psyr_2241 0.79 -1.2 2,606,803 - Psyr_2241 0.79 -0.5 2,606,803 - Psyr_2241 0.79 -0.4 2,607,061 - +0.4 2,607,061 - +1.1 2,607,061 - +2.3 2,607,061 - +0.3 2,607,174 + +1.0 2,607,174 + +1.5 2,607,223 - -0.9 2,607,223 - +0.3 2,607,223 - -2.4 2,607,246 + +0.1 2,607,246 + -0.4 2,607,247 - +0.0 2,607,247 - -0.1 2,607,247 - +1.7 2,607,307 - +0.1 2,607,390 + +0.9 2,607,390 + -0.6 2,607,390 + +1.3 2,607,390 + -0.9 2,607,391 - -0.9 2,607,391 - -0.1 2,607,391 - +0.6 2,607,391 - +0.0 2,607,391 - +2.0 2,607,443 + Psyr_2242 0.26 -0.5 2,607,443 + Psyr_2242 0.26 +0.5 2,607,443 + Psyr_2242 0.26 +0.3 2,607,443 + Psyr_2242 0.26 -0.2 2,607,444 - Psyr_2242 0.27 -0.1 2,607,444 - Psyr_2242 0.27 +1.8 2,607,444 - Psyr_2242 0.27 +0.3 2,607,645 + -0.9 2,607,666 - -0.8 2,607,838 + Psyr_2243 0.41 -0.8 2,607,838 + Psyr_2243 0.41 +0.7 2,607,838 + Psyr_2243 0.41 +0.4 2,607,839 - Psyr_2243 0.41 -0.3 2,607,839 - Psyr_2243 0.41 +0.5 2,607,959 + Psyr_2243 0.71 -0.8 2,607,960 - Psyr_2243 0.71 -1.7 2,607,960 - Psyr_2243 0.71 -0.4 2,608,015 + Psyr_2243 0.85 -0.7 2,608,081 + -1.0 2,608,081 + +0.1 2,608,082 - +0.3 2,608,082 - -0.1 2,608,082 - -0.5 2,608,141 + +0.3
Or see this region's nucleotide sequence