Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2134

Experiment: KB with Irigenin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2133 and Psyr_2134 are separated by 77 nucleotidesPsyr_2134 and Psyr_2135 are separated by 96 nucleotidesPsyr_2135 and Psyr_2136 are separated by 75 nucleotides Psyr_2133: Psyr_2133 - Pseudouridine synthase, at 2,493,154 to 2,494,095 _2133 Psyr_2134: Psyr_2134 - protein of unknown function DUF903, at 2,494,173 to 2,494,397 _2134 Psyr_2135: Psyr_2135 - molybdenum cofactor guanylyltransferase, at 2,494,494 to 2,495,099 _2135 Psyr_2136: Psyr_2136 - Molybdenum cofactor biosynthesis protein, at 2,495,175 to 2,495,714 _2136 Position (kb) 2494 2495Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2493.185 kb on - strandat 2493.185 kb on - strandat 2493.247 kb on - strandat 2493.247 kb on - strandat 2493.253 kb on + strand, within Psyr_2133at 2493.253 kb on + strand, within Psyr_2133at 2493.253 kb on + strand, within Psyr_2133at 2493.254 kb on - strand, within Psyr_2133at 2493.254 kb on - strand, within Psyr_2133at 2493.254 kb on - strand, within Psyr_2133at 2493.254 kb on - strand, within Psyr_2133at 2493.421 kb on + strand, within Psyr_2133at 2493.541 kb on + strand, within Psyr_2133at 2493.541 kb on + strand, within Psyr_2133at 2493.542 kb on - strand, within Psyr_2133at 2493.594 kb on + strand, within Psyr_2133at 2493.595 kb on - strand, within Psyr_2133at 2493.595 kb on - strand, within Psyr_2133at 2493.595 kb on - strand, within Psyr_2133at 2493.674 kb on - strand, within Psyr_2133at 2493.917 kb on + strand, within Psyr_2133at 2493.918 kb on - strand, within Psyr_2133at 2493.918 kb on - strand, within Psyr_2133at 2493.918 kb on - strand, within Psyr_2133at 2493.918 kb on - strand, within Psyr_2133at 2494.097 kb on - strandat 2494.190 kb on + strandat 2494.190 kb on + strandat 2494.191 kb on - strandat 2494.194 kb on + strandat 2494.194 kb on + strandat 2494.195 kb on - strandat 2494.195 kb on - strandat 2494.268 kb on - strand, within Psyr_2134at 2494.268 kb on - strand, within Psyr_2134at 2494.398 kb on + strandat 2494.466 kb on - strandat 2494.467 kb on + strandat 2494.467 kb on + strandat 2494.676 kb on + strand, within Psyr_2135at 2494.677 kb on - strand, within Psyr_2135at 2494.680 kb on + strand, within Psyr_2135at 2494.785 kb on + strand, within Psyr_2135at 2494.785 kb on + strand, within Psyr_2135at 2494.842 kb on + strand, within Psyr_2135at 2494.842 kb on + strand, within Psyr_2135at 2494.843 kb on - strand, within Psyr_2135at 2494.843 kb on - strand, within Psyr_2135at 2495.066 kb on + strandat 2495.066 kb on + strandat 2495.067 kb on - strandat 2495.136 kb on + strandat 2495.136 kb on + strandat 2495.136 kb on + strandat 2495.136 kb on + strandat 2495.137 kb on - strandat 2495.137 kb on - strandat 2495.137 kb on - strandat 2495.138 kb on + strandat 2495.138 kb on + strandat 2495.139 kb on - strandat 2495.139 kb on - strandat 2495.139 kb on - strandat 2495.139 kb on - strandat 2495.139 kb on - strandat 2495.139 kb on - strandat 2495.204 kb on - strandat 2495.210 kb on + strandat 2495.210 kb on + strandat 2495.211 kb on - strandat 2495.211 kb on - strandat 2495.341 kb on - strand, within Psyr_2136

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Irigenin 10 mM
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2,493,185 - +0.5
2,493,185 - -0.8
2,493,247 - -0.4
2,493,247 - +0.1
2,493,253 + Psyr_2133 0.11 +1.3
2,493,253 + Psyr_2133 0.11 -0.4
2,493,253 + Psyr_2133 0.11 +0.1
2,493,254 - Psyr_2133 0.11 -0.1
2,493,254 - Psyr_2133 0.11 +0.2
2,493,254 - Psyr_2133 0.11 -2.1
2,493,254 - Psyr_2133 0.11 -1.4
2,493,421 + Psyr_2133 0.28 -0.3
2,493,541 + Psyr_2133 0.41 -0.7
2,493,541 + Psyr_2133 0.41 -0.1
2,493,542 - Psyr_2133 0.41 +0.2
2,493,594 + Psyr_2133 0.47 -0.1
2,493,595 - Psyr_2133 0.47 +0.5
2,493,595 - Psyr_2133 0.47 +1.7
2,493,595 - Psyr_2133 0.47 +0.7
2,493,674 - Psyr_2133 0.55 -0.9
2,493,917 + Psyr_2133 0.81 -0.7
2,493,918 - Psyr_2133 0.81 -0.1
2,493,918 - Psyr_2133 0.81 +0.1
2,493,918 - Psyr_2133 0.81 -2.4
2,493,918 - Psyr_2133 0.81 +0.3
2,494,097 - -0.3
2,494,190 + -2.7
2,494,190 + -1.5
2,494,191 - +1.5
2,494,194 + +1.5
2,494,194 + -0.2
2,494,195 - +0.8
2,494,195 - +1.2
2,494,268 - Psyr_2134 0.42 +0.1
2,494,268 - Psyr_2134 0.42 -0.7
2,494,398 + +0.1
2,494,466 - +0.4
2,494,467 + +0.5
2,494,467 + +0.4
2,494,676 + Psyr_2135 0.30 -0.7
2,494,677 - Psyr_2135 0.30 +0.3
2,494,680 + Psyr_2135 0.31 -0.1
2,494,785 + Psyr_2135 0.48 -0.1
2,494,785 + Psyr_2135 0.48 +0.1
2,494,842 + Psyr_2135 0.57 +0.1
2,494,842 + Psyr_2135 0.57 -0.9
2,494,843 - Psyr_2135 0.58 -0.1
2,494,843 - Psyr_2135 0.58 -0.8
2,495,066 + -0.1
2,495,066 + -0.5
2,495,067 - +0.5
2,495,136 + +0.1
2,495,136 + -0.3
2,495,136 + -0.3
2,495,136 + -0.3
2,495,137 - -0.4
2,495,137 - -0.9
2,495,137 - -2.4
2,495,138 + -1.3
2,495,138 + +2.9
2,495,139 - -0.7
2,495,139 - +0.9
2,495,139 - +0.7
2,495,139 - -1.3
2,495,139 - -1.4
2,495,139 - +0.4
2,495,204 - -0.3
2,495,210 + -0.5
2,495,210 + -0.4
2,495,211 - -0.4
2,495,211 - -0.9
2,495,341 - Psyr_2136 0.31 +0.3

Or see this region's nucleotide sequence