Experiment: KB with Irigenin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0811 and Psyr_0812 are separated by 27 nucleotides Psyr_0812 and Psyr_0813 are separated by 37 nucleotides Psyr_0813 and Psyr_0814 are separated by 209 nucleotides
Psyr_0811: Psyr_0811 - Integral membrane protein TerC, at 915,949 to 916,983
_0811
Psyr_0812: Psyr_0812 - stress protein, at 917,011 to 917,586
_0812
Psyr_0813: Psyr_0813 - stress protein, at 917,624 to 918,202
_0813
Psyr_0814: Psyr_0814 - Protein of unknown function DUF124, at 918,412 to 919,287
_0814
Position (kb)
917
918 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 916.129 kb on + strand, within Psyr_0811 at 916.130 kb on - strand, within Psyr_0811 at 916.130 kb on - strand, within Psyr_0811 at 916.130 kb on - strand, within Psyr_0811 at 916.130 kb on - strand, within Psyr_0811 at 916.361 kb on + strand, within Psyr_0811 at 916.362 kb on - strand, within Psyr_0811 at 916.362 kb on - strand, within Psyr_0811 at 916.362 kb on - strand, within Psyr_0811 at 916.364 kb on + strand, within Psyr_0811 at 916.364 kb on + strand, within Psyr_0811 at 916.364 kb on + strand, within Psyr_0811 at 916.365 kb on - strand, within Psyr_0811 at 916.365 kb on - strand, within Psyr_0811 at 916.365 kb on - strand, within Psyr_0811 at 916.365 kb on - strand, within Psyr_0811 at 916.457 kb on - strand, within Psyr_0811 at 916.747 kb on + strand, within Psyr_0811 at 916.747 kb on + strand, within Psyr_0811 at 916.747 kb on + strand, within Psyr_0811 at 916.748 kb on - strand, within Psyr_0811 at 916.748 kb on - strand, within Psyr_0811 at 916.748 kb on - strand, within Psyr_0811 at 916.846 kb on - strand, within Psyr_0811 at 917.078 kb on + strand, within Psyr_0812 at 917.078 kb on + strand, within Psyr_0812 at 917.078 kb on + strand, within Psyr_0812 at 917.079 kb on - strand, within Psyr_0812 at 917.197 kb on + strand, within Psyr_0812 at 917.197 kb on + strand, within Psyr_0812 at 917.402 kb on + strand, within Psyr_0812 at 917.492 kb on - strand, within Psyr_0812 at 917.549 kb on + strand at 917.550 kb on - strand at 917.631 kb on + strand at 917.631 kb on + strand at 917.632 kb on - strand at 917.632 kb on - strand at 917.641 kb on + strand at 917.697 kb on + strand, within Psyr_0813 at 917.698 kb on - strand, within Psyr_0813 at 917.810 kb on + strand, within Psyr_0813 at 917.810 kb on + strand, within Psyr_0813 at 918.005 kb on + strand, within Psyr_0813 at 918.005 kb on + strand, within Psyr_0813 at 918.005 kb on + strand, within Psyr_0813 at 918.005 kb on + strand, within Psyr_0813 at 918.005 kb on + strand, within Psyr_0813 at 918.005 kb on + strand, within Psyr_0813 at 918.005 kb on + strand, within Psyr_0813 at 918.005 kb on + strand, within Psyr_0813 at 918.006 kb on - strand, within Psyr_0813 at 918.006 kb on - strand, within Psyr_0813 at 918.006 kb on - strand, within Psyr_0813 at 918.006 kb on - strand, within Psyr_0813 at 918.006 kb on - strand, within Psyr_0813 at 918.006 kb on - strand, within Psyr_0813 at 918.104 kb on + strand, within Psyr_0813 at 918.104 kb on + strand, within Psyr_0813 at 918.253 kb on + strand at 918.393 kb on + strand at 918.393 kb on + strand at 918.393 kb on + strand at 918.393 kb on + strand at 918.394 kb on - strand at 918.394 kb on - strand at 918.394 kb on - strand at 918.401 kb on + strand at 918.401 kb on + strand at 918.401 kb on + strand at 918.402 kb on - strand at 918.402 kb on - strand at 918.402 kb on - strand at 918.431 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Irigenin 10 mM remove 916,129 + Psyr_0811 0.17 -1.9 916,130 - Psyr_0811 0.17 -1.0 916,130 - Psyr_0811 0.17 -1.0 916,130 - Psyr_0811 0.17 -0.4 916,130 - Psyr_0811 0.17 -0.4 916,361 + Psyr_0811 0.40 +0.0 916,362 - Psyr_0811 0.40 -1.3 916,362 - Psyr_0811 0.40 +0.9 916,362 - Psyr_0811 0.40 -1.8 916,364 + Psyr_0811 0.40 +0.6 916,364 + Psyr_0811 0.40 +1.3 916,364 + Psyr_0811 0.40 +0.7 916,365 - Psyr_0811 0.40 +0.2 916,365 - Psyr_0811 0.40 +0.2 916,365 - Psyr_0811 0.40 -0.3 916,365 - Psyr_0811 0.40 -0.4 916,457 - Psyr_0811 0.49 -0.3 916,747 + Psyr_0811 0.77 -1.5 916,747 + Psyr_0811 0.77 -0.4 916,747 + Psyr_0811 0.77 +1.2 916,748 - Psyr_0811 0.77 -1.0 916,748 - Psyr_0811 0.77 -0.8 916,748 - Psyr_0811 0.77 +0.1 916,846 - Psyr_0811 0.87 -0.1 917,078 + Psyr_0812 0.12 -0.8 917,078 + Psyr_0812 0.12 -0.8 917,078 + Psyr_0812 0.12 -1.8 917,079 - Psyr_0812 0.12 +1.3 917,197 + Psyr_0812 0.32 -2.0 917,197 + Psyr_0812 0.32 -0.6 917,402 + Psyr_0812 0.68 -0.3 917,492 - Psyr_0812 0.84 -1.0 917,549 + +0.4 917,550 - +1.8 917,631 + +0.4 917,631 + +0.2 917,632 - -0.2 917,632 - +0.1 917,641 + -0.2 917,697 + Psyr_0813 0.13 -0.0 917,698 - Psyr_0813 0.13 +0.2 917,810 + Psyr_0813 0.32 -0.4 917,810 + Psyr_0813 0.32 +0.8 918,005 + Psyr_0813 0.66 -1.3 918,005 + Psyr_0813 0.66 +0.5 918,005 + Psyr_0813 0.66 +1.0 918,005 + Psyr_0813 0.66 +0.9 918,005 + Psyr_0813 0.66 -0.7 918,005 + Psyr_0813 0.66 +1.0 918,005 + Psyr_0813 0.66 +0.5 918,005 + Psyr_0813 0.66 +0.4 918,006 - Psyr_0813 0.66 +0.2 918,006 - Psyr_0813 0.66 +0.4 918,006 - Psyr_0813 0.66 -1.3 918,006 - Psyr_0813 0.66 -0.3 918,006 - Psyr_0813 0.66 +0.2 918,006 - Psyr_0813 0.66 -0.3 918,104 + Psyr_0813 0.83 -0.2 918,104 + Psyr_0813 0.83 -2.1 918,253 + -0.2 918,393 + -0.0 918,393 + +0.5 918,393 + +0.5 918,393 + +1.2 918,394 - +0.7 918,394 - -0.3 918,394 - -1.3 918,401 + -0.7 918,401 + -0.9 918,401 + +0.2 918,402 - -0.3 918,402 - +1.2 918,402 - +0.4 918,431 - -0.8
Or see this region's nucleotide sequence