Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0131

Experiment: KB with Irigenin 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Irigenin 10 mM
138,628	+		Psyr_0130	0.60	+0.2
138,628	+		Psyr_0130	0.60	+0.6
138,628	+		Psyr_0130	0.60	-1.0
138,629	-		Psyr_0130	0.60	+0.4
138,629	-		Psyr_0130	0.60	-0.0
138,629	-		Psyr_0130	0.60	+1.2
138,629	-		Psyr_0130	0.60	+0.1
138,629	-		Psyr_0130	0.60	+0.6
138,629	-		Psyr_0130	0.60	-0.2
138,629	-		Psyr_0130	0.60	+0.8
138,629	-		Psyr_0130	0.60	-0.3
138,629	-		Psyr_0130	0.60	+1.2
138,629	-		Psyr_0130	0.60	+0.4
138,629	-		Psyr_0130	0.60	+0.2
138,634	+		Psyr_0130	0.61	+0.6
138,634	+		Psyr_0130	0.61	-0.1
138,634	+		Psyr_0130	0.61	-1.1
138,634	+		Psyr_0130	0.61	-1.2
138,634	+		Psyr_0130	0.61	+0.2
138,634	+		Psyr_0130	0.61	-0.7
138,634	+		Psyr_0130	0.61	+0.5
138,634	+		Psyr_0130	0.61	-0.5
138,634	+		Psyr_0130	0.61	-0.3
138,634	+		Psyr_0130	0.61	-0.6
138,634	+		Psyr_0130	0.61	-1.4
138,634	+		Psyr_0130	0.61	-0.8
138,634	+		Psyr_0130	0.61	+0.5
138,634	+		Psyr_0130	0.61	-0.1
138,634	+		Psyr_0130	0.61	+0.2
138,634	+		Psyr_0130	0.61	-1.8
138,634	+		Psyr_0130	0.61	-0.1
138,634	+		Psyr_0130	0.61	-0.8
138,634	+		Psyr_0130	0.61	-0.3
138,634	+		Psyr_0130	0.61	-0.1
138,635	-		Psyr_0130	0.61	-0.9
138,635	-		Psyr_0130	0.61	+0.6
138,635	-		Psyr_0130	0.61	-1.4
138,635	-		Psyr_0130	0.61	-0.4
138,635	-		Psyr_0130	0.61	+0.8
138,635	-		Psyr_0130	0.61	-0.4
138,635	-		Psyr_0130	0.61	-1.2
138,635	-		Psyr_0130	0.61	+0.8
138,635	-		Psyr_0130	0.61	+0.1
138,635	-		Psyr_0130	0.61	+0.9
138,635	-		Psyr_0130	0.61	+1.9
138,635	-		Psyr_0130	0.61	-0.6
138,635	-		Psyr_0130	0.61	+0.0
138,635	-		Psyr_0130	0.61	-0.9
138,635	-		Psyr_0130	0.61	-0.4
138,635	-		Psyr_0130	0.61	+0.9
138,635	-		Psyr_0130	0.61	-0.5
138,635	-		Psyr_0130	0.61	+0.2
138,635	-		Psyr_0130	0.61	-0.2
138,635	-		Psyr_0130	0.61	-0.9
138,635	-		Psyr_0130	0.61	-0.4
138,635	-		Psyr_0130	0.61	-0.0
138,635	-		Psyr_0130	0.61	-0.3
138,635	-		Psyr_0130	0.61	+0.8
138,635	-		Psyr_0130	0.61	-0.6
138,635	-		Psyr_0130	0.61	-0.7
138,635	-		Psyr_0130	0.61	+0.7
138,635	-		Psyr_0130	0.61	+1.2
138,635	-		Psyr_0130	0.61	-0.8
138,635	-		Psyr_0130	0.61	+0.3
138,635	-		Psyr_0130	0.61	-0.8
138,637	-		Psyr_0130	0.61	-1.0
138,729	+		Psyr_0130	0.71	+1.0
138,729	+		Psyr_0130	0.71	+1.1
138,729	+		Psyr_0130	0.71	-0.6
138,729	+		Psyr_0130	0.71	-1.0
138,729	+		Psyr_0130	0.71	-0.2
138,729	+		Psyr_0130	0.71	-0.1
138,729	+		Psyr_0130	0.71	+0.0
138,730	-		Psyr_0130	0.71	+0.4
138,730	-		Psyr_0130	0.71	+0.2
138,730	-		Psyr_0130	0.71	-0.3
138,730	-		Psyr_0130	0.71	-0.0
138,795	+		Psyr_0130	0.78	+1.3
138,795	+		Psyr_0130	0.78	-0.5
138,795	+		Psyr_0130	0.78	+0.1
138,795	+		Psyr_0130	0.78	+0.2
138,795	+		Psyr_0130	0.78	+0.3
138,795	+		Psyr_0130	0.78	+3.0
138,795	+		Psyr_0130	0.78	+0.3
138,795	+		Psyr_0130	0.78	-1.3
138,796	-		Psyr_0130	0.78	+0.4
138,796	-		Psyr_0130	0.78	+1.1
138,796	-		Psyr_0130	0.78	-0.5
138,796	-		Psyr_0130	0.78	+1.0
138,796	-		Psyr_0130	0.78	+0.1
138,796	-		Psyr_0130	0.78	-0.5
138,796	-		Psyr_0130	0.78	-0.1
138,796	-		Psyr_0130	0.78	+1.4
138,796	-		Psyr_0130	0.78	-0.9
138,877	+		Psyr_0130	0.87	-1.0
138,877	+		Psyr_0130	0.87	+0.3
138,877	+		Psyr_0130	0.87	-0.1
138,877	+		Psyr_0130	0.87	+0.1
138,877	+		Psyr_0130	0.87	-1.2
138,877	+		Psyr_0130	0.87	-0.3
138,877	+		Psyr_0130	0.87	-0.5
138,878	-		Psyr_0130	0.87	+3.7
138,878	-		Psyr_0130	0.87	+0.2
138,878	-		Psyr_0130	0.87	+0.4
138,878	-		Psyr_0130	0.87	+0.5
138,878	-		Psyr_0130	0.87	-0.6
138,878	-		Psyr_0130	0.87	+0.7
138,944	+				-0.0
138,944	+				+0.8
138,944	+				-0.1
138,944	+				-1.1
138,944	+				+1.4
138,944	+				+1.3
138,944	+				-0.8
138,944	+				-0.2
138,944	+				+0.4
138,944	+				+1.3
138,944	+				+0.7
138,944	+				-0.4
138,945	-				+0.1
138,945	-				+0.4
138,945	-				-0.5
138,945	-				+1.0
138,945	-				-0.8
138,945	-				+0.6
138,945	-				+1.5
138,945	-				-0.2
138,945	-				+0.8
138,952	+				-0.2
138,952	+				-0.8
138,953	-				+0.4
139,008	+				-0.5
139,008	+				+0.6
139,008	+				-0.4
139,008	+				-1.0
139,008	+				-0.5
139,009	-				-0.5
139,029	+				-1.5
139,030	-				+0.4
139,030	-				+0.4
139,030	-				-0.0
139,030	-				-0.5
139,030	-				+0.6
139,030	-				+0.6
139,030	-				-0.4
139,030	-				-0.3
139,030	-				-1.1
139,030	-				-0.2
139,030	-				-0.6
139,081	+				-0.5
139,081	+				-0.0
139,136	+				-1.1
139,136	+				-0.3
139,137	-				+0.0
139,155	+				+0.9
139,156	-				-1.0
139,172	+				+0.2
139,172	+				-0.2
139,172	+				-0.3
139,173	-				+1.0
139,173	-				-0.6
139,173	-				-0.9
139,282	+				-0.2
139,282	+				+0.0
139,282	+				-1.0
139,282	+				-0.4
139,282	+				-0.4
139,282	+				+0.1
139,282	+				-0.6
139,282	+				+2.2
139,283	-				+0.7
139,283	-				-0.1
139,283	-				+0.7
139,283	-				-0.1
139,300	+				-0.3
139,460	+				-0.1
139,580	+				+0.1
139,586	+				-1.8
139,586	+				+0.2
139,587	-				-1.1
139,710	-		Psyr_0131	0.18	-1.3
139,710	-		Psyr_0131	0.18	+1.0
139,827	+				+2.4
139,828	-		Psyr_0131	0.36	-0.8
140,014	-		Psyr_0131	0.63	+0.0
140,014	-		Psyr_0131	0.63	+0.6
140,059	+		Psyr_0131	0.70	-0.8
140,059	+		Psyr_0131	0.70	-0.1
140,059	+		Psyr_0131	0.70	-1.6
140,059	+		Psyr_0131	0.70	-1.1
140,059	+		Psyr_0131	0.70	-0.9
140,059	+		Psyr_0131	0.70	+0.5
140,060	-		Psyr_0131	0.70	+0.2
140,205	+				-0.1
140,205	+				+1.2
140,205	+				-3.0
140,205	+				-0.4
140,206	-				+0.2
140,206	-				-0.3
140,206	-				-0.6
140,206	-				+0.0
140,206	-				-0.4
140,206	-				-0.2
140,206	-				+0.4
140,206	-				-0.8
140,206	-				+0.2
140,206	-				-0.1
140,265	+				-0.6
140,305	+				-1.2
140,305	+				-0.3
140,306	-				-0.8
140,306	-				+0.1
140,306	-				+0.6
140,306	-				-1.8
140,306	-				+0.5
140,306	-				+0.0
140,355	+				+0.1
140,355	+				+0.4
140,355	+				-0.4
140,355	+				-0.3
140,355	+				-0.7
140,356	-				+0.8
140,356	-				-0.5
140,356	-				+0.7
140,435	+		Psyr_0132	0.29	-1.8
140,435	+		Psyr_0132	0.29	+0.3
140,436	-		Psyr_0132	0.30	-1.0
140,436	-		Psyr_0132	0.30	-1.0
140,436	-		Psyr_0132	0.30	-0.8
140,436	-		Psyr_0132	0.30	+0.4
140,436	-		Psyr_0132	0.30	+0.6
140,540	+		Psyr_0132	0.71	-0.9
140,593	+				-0.7
140,593	+				-0.2
140,593	+				+0.0
140,593	+				+1.6
140,593	+				-0.2
140,593	+				+0.3
140,593	+				-0.1
140,593	+				+0.5
140,593	+				-0.7
140,593	+				+0.4
140,593	+				+1.0
140,594	-				-0.7
140,594	-				+0.2
140,594	-				+0.1
140,594	-				+0.4
140,594	-				-1.3
140,713	+				+0.3
140,713	+				+0.4
140,714	-				+0.7
140,714	-				-0.2
140,806	+		Psyr_0133	0.24	+0.3
140,807	-		Psyr_0133	0.24	-0.6
140,807	-		Psyr_0133	0.24	-0.5
140,854	+		Psyr_0133	0.34	-0.5
140,854	+		Psyr_0133	0.34	+0.4
140,854	+		Psyr_0133	0.34	+0.2
140,854	+		Psyr_0133	0.34	+0.7
140,855	-		Psyr_0133	0.34	+0.9
140,855	-		Psyr_0133	0.34	+0.1
140,855	-		Psyr_0133	0.34	+0.2
140,855	-		Psyr_0133	0.34	-0.1
140,855	-		Psyr_0133	0.34	+0.2
140,855	-		Psyr_0133	0.34	-1.0
140,855	-		Psyr_0133	0.34	-0.4
140,907	+		Psyr_0133	0.45	+0.8
140,908	-		Psyr_0133	0.45	+0.1
141,071	+		Psyr_0133	0.80	-0.1
141,190	+				-0.1
141,190	+				-0.4
141,191	-				-0.2
141,191	-				-0.2
141,191	-				+3.2
141,191	-				+0.1
141,191	-				-0.6
141,191	-				+0.2
141,191	-				+0.4
141,191	-				-0.6
141,233	-				+0.1
141,233	-				-0.3
141,233	-				-0.0
141,233	-				+1.0
141,233	-				-0.9