Experiment: histamine 2mM N source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004709 and ABIE53_004710 are separated by 387 nucleotides ABIE53_004710 and ABIE53_004711 are separated by 78 nucleotides ABIE53_004711 and ABIE53_004712 are separated by 126 nucleotides
ABIE53_004709: ABIE53_004709 - hypothetical protein, at 901,374 to 901,637
_004709
ABIE53_004710: ABIE53_004710 - cellulase/cellobiase CelA1, at 902,025 to 902,372
_004710
ABIE53_004711: ABIE53_004711 - CubicO group peptidase (beta-lactamase class C family), at 902,451 to 903,650
_004711
ABIE53_004712: ABIE53_004712 - DNA-binding protein H-NS, at 903,777 to 904,067
_004712
Position (kb) 902
903
904 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 901.595 kb on + strand, within ABIE53_004709 at 901.596 kb on - strand, within ABIE53_004709 at 901.607 kb on + strand, within ABIE53_004709 at 901.607 kb on + strand, within ABIE53_004709 at 901.608 kb on - strand, within ABIE53_004709 at 901.608 kb on - strand, within ABIE53_004709 at 901.608 kb on - strand, within ABIE53_004709 at 901.617 kb on + strand at 901.617 kb on + strand at 901.617 kb on + strand at 901.617 kb on + strand at 901.617 kb on + strand at 901.618 kb on - strand at 901.618 kb on - strand at 901.618 kb on - strand at 901.618 kb on - strand at 901.618 kb on - strand at 901.618 kb on - strand at 901.618 kb on - strand at 901.618 kb on - strand at 901.618 kb on - strand at 901.635 kb on + strand at 901.636 kb on - strand at 901.636 kb on - strand at 901.683 kb on + strand at 901.683 kb on + strand at 901.683 kb on + strand at 901.684 kb on - strand at 901.684 kb on - strand at 901.684 kb on - strand at 901.684 kb on - strand at 901.684 kb on - strand at 901.684 kb on - strand at 901.729 kb on + strand at 901.741 kb on + strand at 901.741 kb on + strand at 901.742 kb on - strand at 901.774 kb on + strand at 901.775 kb on - strand at 901.775 kb on - strand at 901.775 kb on - strand at 901.775 kb on - strand at 901.797 kb on + strand at 901.797 kb on + strand at 901.797 kb on + strand at 901.797 kb on + strand at 901.797 kb on + strand at 901.798 kb on - strand at 901.798 kb on - strand at 901.798 kb on - strand at 901.814 kb on + strand at 901.815 kb on - strand at 901.815 kb on - strand at 901.815 kb on - strand at 901.818 kb on + strand at 901.818 kb on + strand at 901.818 kb on + strand at 901.818 kb on + strand at 901.819 kb on - strand at 901.819 kb on - strand at 901.819 kb on - strand at 901.819 kb on - strand at 901.819 kb on - strand at 901.819 kb on - strand at 901.819 kb on - strand at 901.819 kb on - strand at 901.819 kb on - strand at 901.820 kb on + strand at 901.820 kb on + strand at 901.820 kb on + strand at 901.820 kb on + strand at 901.820 kb on + strand at 901.821 kb on - strand at 901.821 kb on - strand at 901.821 kb on - strand at 901.821 kb on - strand at 901.828 kb on + strand at 901.828 kb on + strand at 901.828 kb on + strand at 901.829 kb on - strand at 901.829 kb on - strand at 901.857 kb on - strand at 901.857 kb on - strand at 901.869 kb on + strand at 901.869 kb on + strand at 901.918 kb on - strand at 901.918 kb on - strand at 901.918 kb on - strand at 901.930 kb on + strand at 901.966 kb on + strand at 901.982 kb on + strand at 901.983 kb on - strand at 901.983 kb on - strand at 901.992 kb on + strand at 901.992 kb on + strand at 901.992 kb on + strand at 901.992 kb on + strand at 901.992 kb on + strand at 901.992 kb on + strand at 901.992 kb on + strand at 901.992 kb on + strand at 901.992 kb on + strand at 901.993 kb on - strand at 901.993 kb on - strand at 901.993 kb on - strand at 901.993 kb on - strand at 901.993 kb on - strand at 901.997 kb on + strand at 901.998 kb on - strand at 902.014 kb on + strand at 902.123 kb on + strand, within ABIE53_004710 at 902.141 kb on + strand, within ABIE53_004710 at 902.150 kb on + strand, within ABIE53_004710 at 902.206 kb on + strand, within ABIE53_004710 at 902.206 kb on + strand, within ABIE53_004710 at 902.206 kb on + strand, within ABIE53_004710 at 902.206 kb on + strand, within ABIE53_004710 at 902.206 kb on + strand, within ABIE53_004710 at 902.206 kb on + strand, within ABIE53_004710 at 902.206 kb on + strand, within ABIE53_004710 at 902.207 kb on - strand, within ABIE53_004710 at 902.207 kb on - strand, within ABIE53_004710 at 902.207 kb on - strand, within ABIE53_004710 at 902.207 kb on - strand, within ABIE53_004710 at 902.207 kb on - strand, within ABIE53_004710 at 902.207 kb on - strand, within ABIE53_004710 at 902.257 kb on - strand, within ABIE53_004710 at 902.379 kb on - strand at 902.413 kb on + strand at 902.413 kb on + strand at 902.413 kb on + strand at 902.413 kb on + strand at 902.414 kb on - strand at 902.414 kb on - strand at 902.414 kb on - strand at 902.414 kb on - strand at 902.414 kb on - strand at 902.414 kb on - strand at 902.414 kb on - strand at 902.450 kb on + strand at 902.498 kb on + strand at 902.499 kb on - strand at 902.499 kb on - strand at 902.499 kb on - strand at 902.499 kb on - strand at 902.511 kb on + strand at 902.574 kb on + strand, within ABIE53_004711 at 902.574 kb on + strand, within ABIE53_004711 at 902.574 kb on + strand, within ABIE53_004711 at 902.574 kb on + strand, within ABIE53_004711 at 902.575 kb on - strand, within ABIE53_004711 at 902.575 kb on - strand, within ABIE53_004711 at 902.575 kb on - strand, within ABIE53_004711 at 902.575 kb on - strand, within ABIE53_004711 at 902.630 kb on + strand, within ABIE53_004711 at 902.630 kb on + strand, within ABIE53_004711 at 902.631 kb on - strand, within ABIE53_004711 at 902.631 kb on - strand, within ABIE53_004711 at 902.856 kb on + strand, within ABIE53_004711 at 902.857 kb on - strand, within ABIE53_004711 at 902.857 kb on - strand, within ABIE53_004711 at 902.857 kb on - strand, within ABIE53_004711 at 902.892 kb on + strand, within ABIE53_004711 at 902.892 kb on + strand, within ABIE53_004711 at 902.892 kb on + strand, within ABIE53_004711 at 902.892 kb on + strand, within ABIE53_004711 at 902.893 kb on - strand, within ABIE53_004711 at 902.893 kb on - strand, within ABIE53_004711 at 902.997 kb on + strand, within ABIE53_004711 at 902.998 kb on - strand, within ABIE53_004711 at 903.153 kb on + strand, within ABIE53_004711 at 903.153 kb on + strand, within ABIE53_004711 at 903.153 kb on + strand, within ABIE53_004711 at 903.154 kb on - strand, within ABIE53_004711 at 903.154 kb on - strand, within ABIE53_004711 at 903.273 kb on + strand, within ABIE53_004711 at 903.273 kb on + strand, within ABIE53_004711 at 903.274 kb on - strand, within ABIE53_004711 at 903.274 kb on - strand, within ABIE53_004711 at 903.274 kb on - strand, within ABIE53_004711 at 903.483 kb on + strand, within ABIE53_004711 at 903.557 kb on + strand at 903.557 kb on + strand at 903.558 kb on - strand at 903.558 kb on - strand at 903.630 kb on + strand at 903.630 kb on + strand at 903.630 kb on + strand at 903.630 kb on + strand at 903.630 kb on + strand at 903.631 kb on - strand at 903.631 kb on - strand at 903.631 kb on - strand at 903.631 kb on - strand at 903.631 kb on - strand at 903.631 kb on - strand at 903.631 kb on - strand at 903.732 kb on - strand at 903.732 kb on - strand at 903.732 kb on - strand at 903.786 kb on + strand at 903.786 kb on + strand at 903.786 kb on + strand at 903.786 kb on + strand at 903.786 kb on + strand at 903.787 kb on - strand at 903.787 kb on - strand at 903.787 kb on - strand at 903.787 kb on - strand at 903.863 kb on + strand, within ABIE53_004712 at 903.895 kb on - strand, within ABIE53_004712 at 903.969 kb on + strand, within ABIE53_004712 at 903.969 kb on + strand, within ABIE53_004712 at 903.970 kb on - strand, within ABIE53_004712 at 903.970 kb on - strand, within ABIE53_004712 at 903.970 kb on - strand, within ABIE53_004712 at 904.050 kb on + strand at 904.051 kb on - strand at 904.051 kb on - strand at 904.065 kb on + strand at 904.182 kb on + strand at 904.182 kb on + strand at 904.182 kb on + strand at 904.183 kb on - strand at 904.426 kb on + strand at 904.427 kb on - strand at 904.427 kb on - strand at 904.427 kb on - strand at 904.478 kb on + strand at 904.533 kb on + strand at 904.534 kb on - strand at 904.583 kb on + strand at 904.606 kb on + strand at 904.606 kb on + strand at 904.606 kb on + strand at 904.606 kb on + strand at 904.606 kb on + strand at 904.606 kb on + strand at 904.606 kb on + strand at 904.606 kb on + strand at 904.606 kb on + strand at 904.607 kb on - strand at 904.607 kb on - strand at 904.607 kb on - strand at 904.607 kb on - strand at 904.607 kb on - strand at 904.607 kb on - strand at 904.648 kb on + strand at 904.648 kb on + strand at 904.649 kb on - strand at 904.649 kb on - strand at 904.649 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction histamine 2mM N source remove 901,595 + ABIE53_004709 0.84 -1.1 901,596 - ABIE53_004709 0.84 -2.6 901,607 + ABIE53_004709 0.88 -0.2 901,607 + ABIE53_004709 0.88 +0.7 901,608 - ABIE53_004709 0.89 +0.0 901,608 - ABIE53_004709 0.89 -0.9 901,608 - ABIE53_004709 0.89 +0.9 901,617 + -0.1 901,617 + -0.8 901,617 + +0.9 901,617 + +0.2 901,617 + +1.4 901,618 - +0.2 901,618 - -0.1 901,618 - -0.5 901,618 - -1.5 901,618 - -0.6 901,618 - -3.1 901,618 - -0.7 901,618 - +0.3 901,618 - -0.0 901,635 + +0.4 901,636 - +0.8 901,636 - +2.9 901,683 + +1.1 901,683 + -0.5 901,683 + -2.4 901,684 - +0.9 901,684 - +0.9 901,684 - -0.8 901,684 - -1.3 901,684 - -1.9 901,684 - -0.1 901,729 + +1.5 901,741 + -2.2 901,741 + -0.5 901,742 - +1.2 901,774 + -3.2 901,775 - +0.3 901,775 - +0.6 901,775 - +0.9 901,775 - -1.0 901,797 + -1.1 901,797 + +0.3 901,797 + -3.7 901,797 + +0.9 901,797 + -2.4 901,798 - -1.1 901,798 - +2.1 901,798 - -2.1 901,814 + -0.7 901,815 - -0.5 901,815 - -0.9 901,815 - +0.9 901,818 + -0.4 901,818 + -1.2 901,818 + +0.9 901,818 + +1.6 901,819 - -1.0 901,819 - -1.5 901,819 - +0.9 901,819 - -0.6 901,819 - -1.3 901,819 - +0.6 901,819 - -3.4 901,819 - -0.7 901,819 - -2.6 901,820 + -1.7 901,820 + -1.2 901,820 + -1.5 901,820 + +1.1 901,820 + -1.9 901,821 - +0.8 901,821 - +0.3 901,821 - -0.7 901,821 - +0.3 901,828 + -0.1 901,828 + -0.5 901,828 + -1.9 901,829 - -0.5 901,829 - +0.4 901,857 - +0.9 901,857 - +1.1 901,869 + +0.8 901,869 + -1.6 901,918 - +2.0 901,918 - -1.8 901,918 - +1.7 901,930 + +1.1 901,966 + -1.0 901,982 + -0.9 901,983 - +1.1 901,983 - +1.3 901,992 + -1.1 901,992 + -1.3 901,992 + -1.3 901,992 + -1.1 901,992 + +3.5 901,992 + -0.6 901,992 + -1.9 901,992 + -0.7 901,992 + +0.3 901,993 - -0.1 901,993 - -0.1 901,993 - +0.6 901,993 - +1.4 901,993 - -0.9 901,997 + -0.5 901,998 - -1.4 902,014 + -2.5 902,123 + ABIE53_004710 0.28 -0.7 902,141 + ABIE53_004710 0.33 -0.6 902,150 + ABIE53_004710 0.36 +0.6 902,206 + ABIE53_004710 0.52 -1.1 902,206 + ABIE53_004710 0.52 +0.0 902,206 + ABIE53_004710 0.52 +1.1 902,206 + ABIE53_004710 0.52 -0.7 902,206 + ABIE53_004710 0.52 +0.8 902,206 + ABIE53_004710 0.52 -2.8 902,206 + ABIE53_004710 0.52 -0.3 902,207 - ABIE53_004710 0.52 -2.3 902,207 - ABIE53_004710 0.52 -3.7 902,207 - ABIE53_004710 0.52 -1.3 902,207 - ABIE53_004710 0.52 +1.9 902,207 - ABIE53_004710 0.52 +1.8 902,207 - ABIE53_004710 0.52 -1.4 902,257 - ABIE53_004710 0.67 -1.8 902,379 - +0.2 902,413 + +1.0 902,413 + +0.0 902,413 + -0.2 902,413 + +0.4 902,414 - +0.0 902,414 - -0.3 902,414 - -0.0 902,414 - +2.5 902,414 - +1.0 902,414 - +1.9 902,414 - -1.5 902,450 + -2.5 902,498 + +0.3 902,499 - -0.7 902,499 - +0.3 902,499 - -0.5 902,499 - -0.4 902,511 + +1.6 902,574 + ABIE53_004711 0.10 -3.0 902,574 + ABIE53_004711 0.10 +3.5 902,574 + ABIE53_004711 0.10 -0.1 902,574 + ABIE53_004711 0.10 +0.9 902,575 - ABIE53_004711 0.10 +0.3 902,575 - ABIE53_004711 0.10 -0.4 902,575 - ABIE53_004711 0.10 +0.6 902,575 - ABIE53_004711 0.10 +0.9 902,630 + ABIE53_004711 0.15 -0.3 902,630 + ABIE53_004711 0.15 -0.2 902,631 - ABIE53_004711 0.15 +1.9 902,631 - ABIE53_004711 0.15 -0.1 902,856 + ABIE53_004711 0.34 -0.0 902,857 - ABIE53_004711 0.34 +0.4 902,857 - ABIE53_004711 0.34 +0.1 902,857 - ABIE53_004711 0.34 +0.2 902,892 + ABIE53_004711 0.37 +1.5 902,892 + ABIE53_004711 0.37 -1.3 902,892 + ABIE53_004711 0.37 -0.5 902,892 + ABIE53_004711 0.37 -1.2 902,893 - ABIE53_004711 0.37 -1.9 902,893 - ABIE53_004711 0.37 -0.7 902,997 + ABIE53_004711 0.46 +0.5 902,998 - ABIE53_004711 0.46 +0.3 903,153 + ABIE53_004711 0.58 -3.5 903,153 + ABIE53_004711 0.58 -0.8 903,153 + ABIE53_004711 0.58 -2.8 903,154 - ABIE53_004711 0.59 +0.4 903,154 - ABIE53_004711 0.59 -0.8 903,273 + ABIE53_004711 0.69 -2.5 903,273 + ABIE53_004711 0.69 +0.6 903,274 - ABIE53_004711 0.69 +0.3 903,274 - ABIE53_004711 0.69 +0.3 903,274 - ABIE53_004711 0.69 +0.7 903,483 + ABIE53_004711 0.86 +3.4 903,557 + -0.1 903,557 + +0.3 903,558 - +0.1 903,558 - -1.3 903,630 + +1.3 903,630 + -1.8 903,630 + -0.5 903,630 + -1.1 903,630 + +0.1 903,631 - -0.1 903,631 - -1.1 903,631 - +0.5 903,631 - -0.5 903,631 - -0.3 903,631 - -1.5 903,631 - +1.9 903,732 - -1.5 903,732 - +1.2 903,732 - +2.0 903,786 + +0.1 903,786 + -0.7 903,786 + -0.1 903,786 + -1.1 903,786 + -0.1 903,787 - +1.9 903,787 - +0.7 903,787 - +0.5 903,787 - -1.8 903,863 + ABIE53_004712 0.30 +1.3 903,895 - ABIE53_004712 0.41 -1.3 903,969 + ABIE53_004712 0.66 +2.1 903,969 + ABIE53_004712 0.66 +1.9 903,970 - ABIE53_004712 0.66 +1.3 903,970 - ABIE53_004712 0.66 +0.5 903,970 - ABIE53_004712 0.66 +1.4 904,050 + -0.6 904,051 - +0.8 904,051 - +0.9 904,065 + +1.5 904,182 + -0.5 904,182 + +1.6 904,182 + -1.8 904,183 - -3.3 904,426 + +2.2 904,427 - -0.5 904,427 - -0.2 904,427 - -0.8 904,478 + -0.9 904,533 + +0.1 904,534 - -1.3 904,583 + -0.8 904,606 + -1.3 904,606 + -0.1 904,606 + +1.7 904,606 + +0.0 904,606 + -0.9 904,606 + -1.7 904,606 + +1.1 904,606 + -0.5 904,606 + -0.1 904,607 - +0.8 904,607 - -1.6 904,607 - +0.9 904,607 - -0.5 904,607 - -1.6 904,607 - -0.1 904,648 + +0.6 904,648 + -0.9 904,649 - +0.3 904,649 - -1.8 904,649 - +1.2
Or see this region's nucleotide sequence