Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001155

Experiment: histamine 2mM N source

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	histamine 2mM N source
1,282,903	+				+1.2
1,282,903	+				-0.8
1,282,903	+				+0.6
1,282,903	+				+1.0
1,282,903	+				+2.9
1,282,903	+				+0.0
1,282,903	+				-0.4
1,282,903	+				-0.6
1,282,904	-				-1.5
1,282,904	-				-1.6
1,282,904	-				-0.8
1,282,904	-				-3.1
1,282,937	+				-2.0
1,282,937	+				-1.0
1,282,937	+				+1.2
1,282,938	-				-1.7
1,282,938	-				-0.2
1,282,938	-				-0.6
1,282,938	-				-2.3
1,282,938	-				-1.9
1,282,951	+				-1.9
1,282,952	-				-1.2
1,282,952	-				+1.8
1,283,043	-				-0.9
1,283,043	-				-3.7
1,283,043	-				-1.2
1,283,043	-				-1.3
1,283,088	+				-2.9
1,283,088	+				-1.1
1,283,088	+				-0.3
1,283,089	-				-0.6
1,283,089	-				-0.8
1,283,089	-				-1.8
1,283,089	-				-0.2
1,283,212	-		ABIE53_001154	0.19	-0.5
1,283,219	+		ABIE53_001154	0.20	-0.4
1,283,219	+		ABIE53_001154	0.20	-0.0
1,283,220	-		ABIE53_001154	0.20	+0.6
1,283,220	-		ABIE53_001154	0.20	+0.2
1,283,220	-		ABIE53_001154	0.20	-1.3
1,283,221	+		ABIE53_001154	0.20	+1.2
1,283,221	+		ABIE53_001154	0.20	-1.3
1,283,221	+		ABIE53_001154	0.20	-0.3
1,283,221	+		ABIE53_001154	0.20	+0.2
1,283,221	+		ABIE53_001154	0.20	-0.8
1,283,221	+		ABIE53_001154	0.20	-2.0
1,283,221	+		ABIE53_001154	0.20	-2.2
1,283,222	-		ABIE53_001154	0.20	-1.9
1,283,222	-		ABIE53_001154	0.20	-2.7
1,283,222	-		ABIE53_001154	0.20	-2.8
1,283,222	-		ABIE53_001154	0.20	+1.0
1,283,222	-		ABIE53_001154	0.20	-1.3
1,283,298	+		ABIE53_001154	0.29	-0.5
1,283,298	+		ABIE53_001154	0.29	-0.8
1,283,316	+		ABIE53_001154	0.32	-2.0
1,283,316	+		ABIE53_001154	0.32	+1.6
1,283,320	+		ABIE53_001154	0.32	-2.5
1,283,340	+		ABIE53_001154	0.35	-2.7
1,283,340	+		ABIE53_001154	0.35	-0.6
1,283,341	-		ABIE53_001154	0.35	-1.0
1,283,378	+		ABIE53_001154	0.39	-0.4
1,283,378	+		ABIE53_001154	0.39	-2.1
1,283,379	-		ABIE53_001154	0.39	-2.0
1,283,382	+		ABIE53_001154	0.40	-0.6
1,283,394	+		ABIE53_001154	0.41	-0.9
1,283,410	-		ABIE53_001154	0.43	+0.6
1,283,455	+		ABIE53_001154	0.49	-1.0
1,283,480	+		ABIE53_001154	0.52	+0.2
1,283,592	+		ABIE53_001154	0.65	-1.0
1,283,663	+		ABIE53_001154	0.74	-0.8
1,283,663	+		ABIE53_001154	0.74	-2.8
1,283,664	-		ABIE53_001154	0.74	-0.9
1,283,690	+		ABIE53_001154	0.77	-0.2
1,283,691	-		ABIE53_001154	0.77	-0.6
1,283,691	-		ABIE53_001154	0.77	-1.2
1,283,705	+		ABIE53_001154	0.79	-0.6
1,283,706	-		ABIE53_001154	0.79	+0.0
1,283,748	+		ABIE53_001154	0.84	-0.6
1,283,748	+		ABIE53_001154	0.84	-0.7
1,283,748	+		ABIE53_001154	0.84	-2.6
1,283,748	+		ABIE53_001154	0.84	-2.5
1,283,748	+		ABIE53_001154	0.84	-0.9
1,283,748	+		ABIE53_001154	0.84	-0.6
1,283,748	+		ABIE53_001154	0.84	-0.2
1,283,748	+		ABIE53_001154	0.84	-2.9
1,283,748	+		ABIE53_001154	0.84	-3.4
1,283,749	-		ABIE53_001154	0.84	-0.6
1,283,749	-		ABIE53_001154	0.84	-1.0
1,283,749	-		ABIE53_001154	0.84	-1.4
1,283,749	-		ABIE53_001154	0.84	-1.0
1,283,749	-		ABIE53_001154	0.84	-3.8
1,283,749	-		ABIE53_001154	0.84	+1.1
1,283,749	-		ABIE53_001154	0.84	-1.8
1,283,749	-		ABIE53_001154	0.84	-0.8
1,283,749	-		ABIE53_001154	0.84	-2.0
1,283,749	-		ABIE53_001154	0.84	-2.5
1,283,749	-		ABIE53_001154	0.84	-1.8
1,283,753	+		ABIE53_001154	0.85	-2.2
1,283,753	+		ABIE53_001154	0.85	-1.2
1,283,753	+		ABIE53_001154	0.85	+1.4
1,283,753	+		ABIE53_001154	0.85	+1.4
1,283,753	+		ABIE53_001154	0.85	-0.9
1,283,753	+		ABIE53_001154	0.85	-1.2
1,283,754	-		ABIE53_001154	0.85	+2.2
1,283,754	-		ABIE53_001154	0.85	-0.2
1,283,754	-		ABIE53_001154	0.85	-2.9
1,283,784	+		ABIE53_001154	0.89	-2.5
1,283,784	+		ABIE53_001154	0.89	-1.5
1,283,784	+		ABIE53_001154	0.89	-0.4
1,283,785	-		ABIE53_001154	0.89	-1.5
1,283,792	+		ABIE53_001154	0.90	+0.8
1,283,792	+		ABIE53_001154	0.90	-1.6
1,283,792	+		ABIE53_001154	0.90	-1.9
1,283,792	+		ABIE53_001154	0.90	-0.1
1,283,792	+		ABIE53_001154	0.90	-2.0
1,283,792	+		ABIE53_001154	0.90	-2.2
1,283,792	+		ABIE53_001154	0.90	-1.0
1,283,793	-		ABIE53_001154	0.90	+2.3
1,283,793	-		ABIE53_001154	0.90	-0.6
1,283,793	-		ABIE53_001154	0.90	-0.6
1,283,793	-		ABIE53_001154	0.90	+0.1
1,283,910	+				-1.7
1,283,910	+				-1.6
1,283,911	-				-2.7
1,283,919	+				-2.0
1,283,919	+				-1.5
1,283,919	+				+1.4
1,283,920	-				-0.8
1,283,920	-				+2.8
1,283,920	-				+0.2
1,283,920	-				-0.8
1,283,997	+				+1.0
1,283,998	-				+0.8
1,283,998	-				-1.4
1,284,029	-		ABIE53_001155	0.12	+1.4
1,284,029	-		ABIE53_001155	0.12	-3.6
1,284,029	-		ABIE53_001155	0.12	-1.4
1,284,029	-		ABIE53_001155	0.12	-3.0
1,284,029	-		ABIE53_001155	0.12	-1.4
1,284,281	+		ABIE53_001155	0.30	-3.5
1,284,281	+		ABIE53_001155	0.30	+1.8
1,284,281	+		ABIE53_001155	0.30	-0.9
1,284,333	+		ABIE53_001155	0.33	-1.6
1,284,334	-		ABIE53_001155	0.33	-2.3
1,284,334	-		ABIE53_001155	0.33	-0.2
1,284,334	-		ABIE53_001155	0.33	-3.8
1,284,573	+		ABIE53_001155	0.50	+1.1
1,284,573	+		ABIE53_001155	0.50	-1.0
1,284,573	+		ABIE53_001155	0.50	-1.3
1,284,573	+		ABIE53_001155	0.50	-1.0
1,284,573	+		ABIE53_001155	0.50	+0.8
1,284,573	+		ABIE53_001155	0.50	-1.0
1,284,573	+		ABIE53_001155	0.50	-1.2
1,284,573	+		ABIE53_001155	0.50	-3.2
1,284,573	+		ABIE53_001155	0.50	-0.9
1,284,573	+		ABIE53_001155	0.50	-3.9
1,284,573	+		ABIE53_001155	0.50	+0.2
1,284,574	-		ABIE53_001155	0.50	+0.3
1,284,574	-		ABIE53_001155	0.50	-0.6
1,284,574	-		ABIE53_001155	0.50	-1.6
1,284,574	-		ABIE53_001155	0.50	-3.6
1,284,574	-		ABIE53_001155	0.50	-0.6
1,284,574	-		ABIE53_001155	0.50	-1.6
1,284,574	-		ABIE53_001155	0.50	-1.2
1,284,574	-		ABIE53_001155	0.50	+1.6
1,284,574	-		ABIE53_001155	0.50	-1.3
1,284,574	-		ABIE53_001155	0.50	-0.6
1,284,619	-		ABIE53_001155	0.54	+1.0
1,284,885	+		ABIE53_001155	0.73	-0.3
1,284,885	+		ABIE53_001155	0.73	-1.4
1,284,885	+		ABIE53_001155	0.73	-0.4
1,284,886	-		ABIE53_001155	0.73	-2.6
1,284,886	-		ABIE53_001155	0.73	-0.8
1,284,886	-		ABIE53_001155	0.73	-2.9
1,284,886	-		ABIE53_001155	0.73	-1.2
1,284,886	-		ABIE53_001155	0.73	+1.5
1,284,888	+		ABIE53_001155	0.73	-2.2
1,284,889	-		ABIE53_001155	0.73	-3.6
1,284,942	-		ABIE53_001155	0.77	-2.0
1,284,947	+		ABIE53_001155	0.77	-2.7
1,285,005	+		ABIE53_001155	0.81	-2.4
1,285,005	+		ABIE53_001155	0.81	-1.6
1,285,005	+		ABIE53_001155	0.81	-1.0
1,285,005	+		ABIE53_001155	0.81	-0.5
1,285,005	+		ABIE53_001155	0.81	-1.0
1,285,005	+		ABIE53_001155	0.81	-1.9
1,285,005	+		ABIE53_001155	0.81	-1.2
1,285,005	+		ABIE53_001155	0.81	+0.3
1,285,005	+		ABIE53_001155	0.81	-0.2
1,285,005	+		ABIE53_001155	0.81	-0.8
1,285,005	+		ABIE53_001155	0.81	-1.6
1,285,005	+		ABIE53_001155	0.81	-0.8
1,285,005	+		ABIE53_001155	0.81	-0.2
1,285,005	+		ABIE53_001155	0.81	-1.4
1,285,006	-		ABIE53_001155	0.81	-1.8
1,285,006	-		ABIE53_001155	0.81	-0.2
1,285,006	-		ABIE53_001155	0.81	-1.4
1,285,006	-		ABIE53_001155	0.81	-1.2
1,285,006	-		ABIE53_001155	0.81	-3.0
1,285,006	-		ABIE53_001155	0.81	-1.4
1,285,006	-		ABIE53_001155	0.81	-1.6
1,285,006	-		ABIE53_001155	0.81	+0.7
1,285,006	-		ABIE53_001155	0.81	-1.0
1,285,058	+		ABIE53_001155	0.85	-1.4
1,285,058	+		ABIE53_001155	0.85	-2.9
1,285,059	-		ABIE53_001155	0.85	-1.0
1,285,067	+		ABIE53_001155	0.86	+0.9
1,285,067	+		ABIE53_001155	0.86	-1.5
1,285,067	+		ABIE53_001155	0.86	-1.7
1,285,067	+		ABIE53_001155	0.86	-0.6
1,285,068	-		ABIE53_001155	0.86	-0.2
1,285,080	+		ABIE53_001155	0.87	+0.4
1,285,160	+				-3.8
1,285,161	-				+0.4
1,285,161	-				-0.6
1,285,191	+				+0.8
1,285,192	-				-1.8
1,285,192	-				-2.9
1,285,266	+				+0.2
1,285,266	+				-0.3
1,285,266	+				+1.1
1,285,266	+				-0.8
1,285,266	+				+2.1
1,285,266	+				+0.8
1,285,266	+				-2.4
1,285,266	+				-3.0
1,285,266	+				-2.0
1,285,266	+				+1.3
1,285,266	+				+0.4
1,285,266	+				+0.6
1,285,266	+				+2.8
1,285,267	-				-1.0
1,285,267	-				-1.6
1,285,267	-				+1.0
1,285,267	-				-1.0
1,285,267	-				-0.5
1,285,267	-				+0.2
1,285,267	-				-2.7
1,285,267	-				-3.4
1,285,267	-				-1.7
1,285,267	-				-2.9
1,285,267	-				-0.6
1,285,267	-				-0.5
1,285,267	-				-1.3
1,285,307	-				-2.2
1,285,401	+				+0.5
1,285,401	+				-0.6
1,285,401	+				+0.2
1,285,401	+				-1.2
1,285,401	+				-0.7
1,285,401	+				-0.8
1,285,428	+				-1.9
1,285,428	+				-1.0
1,285,428	+				-0.8
1,285,428	+				-1.7
1,285,428	+				-1.9
1,285,428	+				+0.8
1,285,428	+				+1.8
1,285,429	-				-0.8
1,285,429	-				-2.8
1,285,429	-				+0.4
1,285,429	-				-0.6
1,285,431	-				-1.5
1,285,431	-				-1.4
1,285,431	-				-1.2
1,285,431	-				-0.9
1,285,491	+				-1.9
1,285,492	-				-1.4
1,285,507	-				-1.2
1,285,507	-				-0.3
1,285,507	-				-1.0
1,285,507	-				+0.8
1,285,515	-				-1.9
1,285,515	-				+0.5
1,285,520	+				-2.7
1,285,520	+				-0.7
1,285,520	+				-0.2
1,285,521	-				+1.5
1,285,521	-				-0.4
1,285,521	-				-0.8
1,285,605	+				+0.8
1,285,605	+				-1.6
1,285,605	+				+0.2
1,285,605	+				-2.3
1,285,605	+				-1.2
1,285,605	+				-1.6
1,285,606	-				-1.6
1,285,606	-				-1.8
1,285,606	-				-1.2
1,285,606	-				-1.2
1,285,606	-				+1.3
1,285,606	-				+0.8
1,285,607	+				-1.0
1,285,607	+				+0.2
1,285,607	+				+0.6
1,285,608	-				+2.4
1,285,608	-				+0.2
1,285,608	-				+0.6
1,285,629	+				-0.2
1,285,630	-				-3.1
1,285,630	-				-2.3
1,285,630	-				-0.6
1,285,659	+				+1.2
1,285,660	-				-1.9
1,285,660	-				-2.5
1,285,661	+				-0.4
1,285,661	+				-1.6
1,285,661	+				-2.4
1,285,662	-				-3.6
1,285,662	-				+0.0
1,285,662	-				-0.6
1,285,725	+				-3.0
1,285,726	-				-0.9
1,285,726	-				-0.3
1,285,726	-				+0.8
1,285,727	+				-0.6
1,285,727	+				-1.0
1,285,727	+				-3.0
1,285,727	+				-0.3
1,285,728	-				-1.0
1,285,728	-				-1.5
1,285,728	-				+0.2
1,285,728	-				-1.6
1,285,887	+		ABIE53_001156	0.11	-0.5
1,285,887	+		ABIE53_001156	0.11	+0.4
1,285,956	+		ABIE53_001156	0.12	-1.4
1,285,956	+		ABIE53_001156	0.12	-0.2
1,286,058	+		ABIE53_001156	0.14	-3.1
1,286,058	+		ABIE53_001156	0.14	-2.5
1,286,058	+		ABIE53_001156	0.14	+0.2
1,286,059	-		ABIE53_001156	0.14	-2.5
1,286,059	-		ABIE53_001156	0.14	+0.6
1,286,059	-		ABIE53_001156	0.14	-1.3
1,286,059	-		ABIE53_001156	0.14	+0.2
1,286,216	+		ABIE53_001156	0.17	-1.4
1,286,216	+		ABIE53_001156	0.17	-1.0
1,286,216	+		ABIE53_001156	0.17	-1.4
1,286,217	-		ABIE53_001156	0.17	-2.6