Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000744

Experiment: histamine 2mM N source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000743 and ABIE53_000744 are separated by 94 nucleotidesABIE53_000744 and ABIE53_000745 are separated by 188 nucleotides ABIE53_000743: ABIE53_000743 - DNA-binding transcriptional LysR family regulator, at 801,154 to 802,041 _000743 ABIE53_000744: ABIE53_000744 - MFS family permease, at 802,136 to 803,749 _000744 ABIE53_000745: ABIE53_000745 - two-component system capsular synthesis response regulator RcsB, at 803,938 to 804,666 _000745 Position (kb) 802 803 804Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 801.155 kb on + strandat 801.179 kb on - strandat 801.226 kb on + strandat 801.227 kb on - strandat 801.227 kb on - strandat 801.227 kb on - strandat 801.227 kb on - strandat 801.386 kb on + strand, within ABIE53_000743at 801.386 kb on + strand, within ABIE53_000743at 801.386 kb on + strand, within ABIE53_000743at 801.386 kb on + strand, within ABIE53_000743at 801.387 kb on - strand, within ABIE53_000743at 801.534 kb on + strand, within ABIE53_000743at 801.534 kb on + strand, within ABIE53_000743at 801.534 kb on + strand, within ABIE53_000743at 801.534 kb on + strand, within ABIE53_000743at 801.535 kb on - strand, within ABIE53_000743at 801.535 kb on - strand, within ABIE53_000743at 801.535 kb on - strand, within ABIE53_000743at 801.535 kb on - strand, within ABIE53_000743at 801.734 kb on + strand, within ABIE53_000743at 801.734 kb on + strand, within ABIE53_000743at 801.735 kb on - strand, within ABIE53_000743at 801.735 kb on - strand, within ABIE53_000743at 801.735 kb on - strand, within ABIE53_000743at 801.880 kb on + strand, within ABIE53_000743at 801.881 kb on - strand, within ABIE53_000743at 802.104 kb on + strandat 802.105 kb on - strandat 802.105 kb on - strandat 802.105 kb on - strandat 802.105 kb on - strandat 802.109 kb on + strandat 802.110 kb on - strandat 802.192 kb on + strandat 802.193 kb on - strandat 802.193 kb on - strandat 802.193 kb on - strandat 802.262 kb on - strandat 802.274 kb on + strandat 802.694 kb on + strand, within ABIE53_000744at 802.694 kb on + strand, within ABIE53_000744at 802.887 kb on + strand, within ABIE53_000744at 802.887 kb on + strand, within ABIE53_000744at 802.887 kb on + strand, within ABIE53_000744at 802.887 kb on + strand, within ABIE53_000744at 802.887 kb on + strand, within ABIE53_000744at 802.887 kb on + strand, within ABIE53_000744at 802.887 kb on + strand, within ABIE53_000744at 802.887 kb on + strand, within ABIE53_000744at 802.887 kb on + strand, within ABIE53_000744at 802.887 kb on + strand, within ABIE53_000744at 802.887 kb on + strand, within ABIE53_000744at 802.887 kb on + strand, within ABIE53_000744at 802.887 kb on + strand, within ABIE53_000744at 802.888 kb on - strand, within ABIE53_000744at 802.888 kb on - strand, within ABIE53_000744at 802.888 kb on - strand, within ABIE53_000744at 802.888 kb on - strand, within ABIE53_000744at 802.888 kb on - strand, within ABIE53_000744at 802.888 kb on - strand, within ABIE53_000744at 802.888 kb on - strand, within ABIE53_000744at 802.888 kb on - strand, within ABIE53_000744at 802.888 kb on - strand, within ABIE53_000744at 802.888 kb on - strand, within ABIE53_000744at 802.888 kb on - strand, within ABIE53_000744at 802.941 kb on + strand, within ABIE53_000744at 803.261 kb on + strand, within ABIE53_000744at 803.261 kb on + strand, within ABIE53_000744at 803.261 kb on + strand, within ABIE53_000744at 803.261 kb on + strand, within ABIE53_000744at 803.261 kb on + strand, within ABIE53_000744at 803.261 kb on + strand, within ABIE53_000744at 803.261 kb on + strand, within ABIE53_000744at 803.261 kb on + strand, within ABIE53_000744at 803.261 kb on + strand, within ABIE53_000744at 803.262 kb on - strand, within ABIE53_000744at 803.262 kb on - strand, within ABIE53_000744at 803.292 kb on + strand, within ABIE53_000744at 803.467 kb on + strand, within ABIE53_000744at 803.467 kb on + strand, within ABIE53_000744at 803.489 kb on - strand, within ABIE53_000744at 803.489 kb on - strand, within ABIE53_000744at 803.669 kb on - strandat 803.687 kb on + strandat 803.687 kb on + strandat 803.688 kb on - strandat 803.709 kb on + strandat 803.709 kb on + strandat 803.815 kb on + strandat 803.839 kb on + strandat 803.839 kb on + strandat 803.848 kb on - strandat 803.889 kb on - strandat 803.889 kb on - strandat 803.963 kb on + strandat 803.971 kb on - strandat 803.971 kb on - strandat 803.981 kb on - strandat 803.981 kb on - strandat 804.002 kb on + strandat 804.326 kb on + strand, within ABIE53_000745at 804.501 kb on - strand, within ABIE53_000745at 804.645 kb on + strandat 804.665 kb on - strandat 804.711 kb on - strandat 804.716 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction histamine 2mM N source
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801,155 + -1.3
801,179 - -0.3
801,226 + +1.4
801,227 - +1.2
801,227 - +1.9
801,227 - +1.0
801,227 - -1.0
801,386 + ABIE53_000743 0.26 -0.3
801,386 + ABIE53_000743 0.26 -1.9
801,386 + ABIE53_000743 0.26 +0.5
801,386 + ABIE53_000743 0.26 +1.5
801,387 - ABIE53_000743 0.26 -0.6
801,534 + ABIE53_000743 0.43 +1.3
801,534 + ABIE53_000743 0.43 -0.6
801,534 + ABIE53_000743 0.43 -1.1
801,534 + ABIE53_000743 0.43 +0.2
801,535 - ABIE53_000743 0.43 +0.6
801,535 - ABIE53_000743 0.43 -1.2
801,535 - ABIE53_000743 0.43 -0.0
801,535 - ABIE53_000743 0.43 -0.2
801,734 + ABIE53_000743 0.65 +0.5
801,734 + ABIE53_000743 0.65 -1.6
801,735 - ABIE53_000743 0.65 -0.6
801,735 - ABIE53_000743 0.65 +0.6
801,735 - ABIE53_000743 0.65 -2.0
801,880 + ABIE53_000743 0.82 +2.0
801,881 - ABIE53_000743 0.82 -0.6
802,104 + -1.7
802,105 - -1.6
802,105 - +0.2
802,105 - -1.3
802,105 - -0.6
802,109 + +0.0
802,110 - +2.9
802,192 + +1.8
802,193 - -0.3
802,193 - -0.1
802,193 - +0.3
802,262 - -2.3
802,274 + -0.2
802,694 + ABIE53_000744 0.35 +1.1
802,694 + ABIE53_000744 0.35 +0.4
802,887 + ABIE53_000744 0.47 -1.7
802,887 + ABIE53_000744 0.47 +0.4
802,887 + ABIE53_000744 0.47 -0.3
802,887 + ABIE53_000744 0.47 -0.1
802,887 + ABIE53_000744 0.47 +1.0
802,887 + ABIE53_000744 0.47 -0.6
802,887 + ABIE53_000744 0.47 +1.2
802,887 + ABIE53_000744 0.47 -1.1
802,887 + ABIE53_000744 0.47 -1.4
802,887 + ABIE53_000744 0.47 +0.2
802,887 + ABIE53_000744 0.47 +0.0
802,887 + ABIE53_000744 0.47 -0.2
802,887 + ABIE53_000744 0.47 +3.8
802,888 - ABIE53_000744 0.47 -0.8
802,888 - ABIE53_000744 0.47 +0.2
802,888 - ABIE53_000744 0.47 +1.7
802,888 - ABIE53_000744 0.47 +1.0
802,888 - ABIE53_000744 0.47 +1.2
802,888 - ABIE53_000744 0.47 -1.6
802,888 - ABIE53_000744 0.47 +1.4
802,888 - ABIE53_000744 0.47 +1.0
802,888 - ABIE53_000744 0.47 +2.0
802,888 - ABIE53_000744 0.47 +1.0
802,888 - ABIE53_000744 0.47 +1.5
802,941 + ABIE53_000744 0.50 -1.1
803,261 + ABIE53_000744 0.70 -1.2
803,261 + ABIE53_000744 0.70 +0.5
803,261 + ABIE53_000744 0.70 -0.5
803,261 + ABIE53_000744 0.70 +1.4
803,261 + ABIE53_000744 0.70 -1.3
803,261 + ABIE53_000744 0.70 +1.6
803,261 + ABIE53_000744 0.70 -2.2
803,261 + ABIE53_000744 0.70 -0.3
803,261 + ABIE53_000744 0.70 +1.4
803,262 - ABIE53_000744 0.70 +0.3
803,262 - ABIE53_000744 0.70 +0.6
803,292 + ABIE53_000744 0.72 -0.4
803,467 + ABIE53_000744 0.82 +1.3
803,467 + ABIE53_000744 0.82 +0.6
803,489 - ABIE53_000744 0.84 -0.6
803,489 - ABIE53_000744 0.84 +1.0
803,669 - -2.0
803,687 + +1.2
803,687 + +2.3
803,688 - -1.2
803,709 + -0.1
803,709 + +2.5
803,815 + +0.4
803,839 + +0.0
803,839 + -0.3
803,848 - +0.2
803,889 - +0.5
803,889 - -0.6
803,963 + -0.3
803,971 - -0.3
803,971 - -0.2
803,981 - +1.8
803,981 - +1.8
804,002 + +0.6
804,326 + ABIE53_000745 0.53 +0.0
804,501 - ABIE53_000745 0.77 -0.2
804,645 + -0.3
804,665 - -1.2
804,711 - +0.7
804,716 + -0.3

Or see this region's nucleotide sequence