Experiment: KB with Usnic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3776 and Psyr_3777 are separated by 31 nucleotides Psyr_3777 and Psyr_3778 are separated by 131 nucleotides Psyr_3778 and Psyr_3779 are separated by 86 nucleotides Psyr_3779 and Psyr_3780 are separated by 24 nucleotides
Psyr_3776: Psyr_3776 - Cytosine deaminase, at 4,495,335 to 4,495,772
_3776
Psyr_3777: Psyr_3777 - conserved hypothetical protein, at 4,495,804 to 4,496,304
_3777
Psyr_3778: Psyr_3778 - Substrate-binding region of ABC-type glycine betaine transport system, at 4,496,436 to 4,497,449
_3778
Psyr_3779: Psyr_3779 - GCN5-related N-acetyltransferase, at 4,497,536 to 4,497,982
_3779
Psyr_3780: Psyr_3780 - Formylmethionine deformylase, at 4,498,007 to 4,498,546
_3780
Position (kb) 4496
4497
4498 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4495.556 kb on - strand, within Psyr_3776 at 4495.647 kb on + strand, within Psyr_3776 at 4495.647 kb on + strand, within Psyr_3776 at 4495.647 kb on + strand, within Psyr_3776 at 4495.648 kb on - strand, within Psyr_3776 at 4495.648 kb on - strand, within Psyr_3776 at 4495.648 kb on - strand, within Psyr_3776 at 4495.648 kb on - strand, within Psyr_3776 at 4495.798 kb on + strand at 4495.798 kb on + strand at 4495.798 kb on + strand at 4495.798 kb on + strand at 4495.799 kb on - strand at 4495.799 kb on - strand at 4495.799 kb on - strand at 4495.885 kb on - strand, within Psyr_3777 at 4495.977 kb on + strand, within Psyr_3777 at 4495.991 kb on + strand, within Psyr_3777 at 4495.992 kb on - strand, within Psyr_3777 at 4495.992 kb on - strand, within Psyr_3777 at 4496.027 kb on + strand, within Psyr_3777 at 4496.048 kb on - strand, within Psyr_3777 at 4496.048 kb on - strand, within Psyr_3777 at 4496.136 kb on - strand, within Psyr_3777 at 4496.265 kb on + strand at 4496.340 kb on + strand at 4496.341 kb on - strand at 4496.397 kb on + strand at 4496.404 kb on + strand at 4496.404 kb on + strand at 4496.405 kb on - strand at 4496.405 kb on - strand at 4496.433 kb on + strand at 4496.433 kb on + strand at 4496.433 kb on + strand at 4496.433 kb on + strand at 4496.433 kb on + strand at 4496.433 kb on + strand at 4496.433 kb on + strand at 4496.434 kb on - strand at 4496.434 kb on - strand at 4496.434 kb on - strand at 4496.434 kb on - strand at 4496.434 kb on - strand at 4496.434 kb on - strand at 4496.434 kb on - strand at 4496.437 kb on + strand at 4496.770 kb on + strand, within Psyr_3778 at 4496.770 kb on + strand, within Psyr_3778 at 4496.771 kb on - strand, within Psyr_3778 at 4496.771 kb on - strand, within Psyr_3778 at 4496.800 kb on + strand, within Psyr_3778 at 4496.800 kb on + strand, within Psyr_3778 at 4496.803 kb on + strand, within Psyr_3778 at 4496.803 kb on + strand, within Psyr_3778 at 4496.803 kb on + strand, within Psyr_3778 at 4496.803 kb on + strand, within Psyr_3778 at 4496.804 kb on - strand, within Psyr_3778 at 4496.804 kb on - strand, within Psyr_3778 at 4496.804 kb on - strand, within Psyr_3778 at 4496.996 kb on + strand, within Psyr_3778 at 4497.084 kb on + strand, within Psyr_3778 at 4497.085 kb on - strand, within Psyr_3778 at 4497.085 kb on - strand, within Psyr_3778 at 4497.085 kb on - strand, within Psyr_3778 at 4497.085 kb on - strand, within Psyr_3778 at 4497.085 kb on - strand, within Psyr_3778 at 4497.089 kb on - strand, within Psyr_3778 at 4497.089 kb on - strand, within Psyr_3778 at 4497.251 kb on + strand, within Psyr_3778 at 4497.359 kb on + strand at 4497.360 kb on - strand at 4497.511 kb on + strand at 4497.511 kb on + strand at 4497.512 kb on - strand at 4497.512 kb on - strand at 4497.535 kb on + strand at 4497.535 kb on + strand at 4497.535 kb on + strand at 4497.535 kb on + strand at 4497.535 kb on + strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.536 kb on - strand at 4497.552 kb on - strand at 4497.632 kb on + strand, within Psyr_3779 at 4497.633 kb on - strand, within Psyr_3779 at 4497.873 kb on - strand, within Psyr_3779 at 4497.873 kb on - strand, within Psyr_3779 at 4497.873 kb on - strand, within Psyr_3779
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Usnic Acid 10 mM remove 4,495,556 - Psyr_3776 0.50 -0.3 4,495,647 + Psyr_3776 0.71 -1.1 4,495,647 + Psyr_3776 0.71 -0.7 4,495,647 + Psyr_3776 0.71 +0.6 4,495,648 - Psyr_3776 0.71 -3.1 4,495,648 - Psyr_3776 0.71 +1.1 4,495,648 - Psyr_3776 0.71 -1.4 4,495,648 - Psyr_3776 0.71 +0.9 4,495,798 + +0.9 4,495,798 + +1.1 4,495,798 + +1.2 4,495,798 + -0.1 4,495,799 - -2.2 4,495,799 - -0.6 4,495,799 - -0.3 4,495,885 - Psyr_3777 0.16 -0.2 4,495,977 + Psyr_3777 0.35 -0.2 4,495,991 + Psyr_3777 0.37 +0.6 4,495,992 - Psyr_3777 0.38 -1.7 4,495,992 - Psyr_3777 0.38 +2.1 4,496,027 + Psyr_3777 0.45 +1.6 4,496,048 - Psyr_3777 0.49 +1.2 4,496,048 - Psyr_3777 0.49 +0.5 4,496,136 - Psyr_3777 0.66 -0.4 4,496,265 + +0.1 4,496,340 + -0.1 4,496,341 - -0.2 4,496,397 + -2.1 4,496,404 + -0.3 4,496,404 + -1.1 4,496,405 - -0.3 4,496,405 - -0.6 4,496,433 + +0.2 4,496,433 + +0.0 4,496,433 + +1.6 4,496,433 + -0.5 4,496,433 + +0.1 4,496,433 + +0.4 4,496,433 + -0.4 4,496,434 - -0.3 4,496,434 - -0.0 4,496,434 - +0.6 4,496,434 - +0.7 4,496,434 - -2.8 4,496,434 - +0.2 4,496,434 - +0.5 4,496,437 + -1.1 4,496,770 + Psyr_3778 0.33 +0.1 4,496,770 + Psyr_3778 0.33 +0.3 4,496,771 - Psyr_3778 0.33 -0.6 4,496,771 - Psyr_3778 0.33 -0.4 4,496,800 + Psyr_3778 0.36 -0.2 4,496,800 + Psyr_3778 0.36 -1.0 4,496,803 + Psyr_3778 0.36 -0.9 4,496,803 + Psyr_3778 0.36 -0.9 4,496,803 + Psyr_3778 0.36 -1.0 4,496,803 + Psyr_3778 0.36 +0.2 4,496,804 - Psyr_3778 0.36 -0.7 4,496,804 - Psyr_3778 0.36 -0.1 4,496,804 - Psyr_3778 0.36 -0.9 4,496,996 + Psyr_3778 0.55 +1.1 4,497,084 + Psyr_3778 0.64 +0.4 4,497,085 - Psyr_3778 0.64 -0.2 4,497,085 - Psyr_3778 0.64 -0.0 4,497,085 - Psyr_3778 0.64 -0.6 4,497,085 - Psyr_3778 0.64 -0.5 4,497,085 - Psyr_3778 0.64 -0.6 4,497,089 - Psyr_3778 0.64 -0.6 4,497,089 - Psyr_3778 0.64 +0.6 4,497,251 + Psyr_3778 0.80 -0.3 4,497,359 + +0.0 4,497,360 - +1.0 4,497,511 + -2.1 4,497,511 + -0.2 4,497,512 - -0.4 4,497,512 - +1.0 4,497,535 + -0.0 4,497,535 + +0.1 4,497,535 + +0.4 4,497,535 + +1.1 4,497,535 + -0.5 4,497,536 - +0.2 4,497,536 - -0.2 4,497,536 - -0.4 4,497,536 - -0.2 4,497,536 - +0.2 4,497,536 - +0.3 4,497,536 - -0.3 4,497,536 - +0.6 4,497,536 - +0.1 4,497,536 - +0.2 4,497,552 - +0.3 4,497,632 + Psyr_3779 0.21 -0.0 4,497,633 - Psyr_3779 0.22 +0.4 4,497,873 - Psyr_3779 0.75 -0.8 4,497,873 - Psyr_3779 0.75 +1.4 4,497,873 - Psyr_3779 0.75 +0.0
Or see this region's nucleotide sequence