Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5066

Experiment: carbon source Sucrose 0.25mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5065 and Pf1N1B4_5066 are separated by 251 nucleotidesPf1N1B4_5066 and Pf1N1B4_5067 are separated by 105 nucleotidesPf1N1B4_5067 and Pf1N1B4_5068 overlap by 1 nucleotides Pf1N1B4_5065 - probable hydrolase, at 5,610,972 to 5,611,790 _5065 Pf1N1B4_5066 - Transcriptional regulator, LysR family, at 5,612,042 to 5,612,935 _5066 Pf1N1B4_5067 - PUTATIVE TRANSFERASE PROTEIN( EC:2.- ), at 5,613,041 to 5,613,706 _5067 Pf1N1B4_5068 - FIG00974267: hypothetical protein, at 5,613,706 to 5,614,368 _5068 Position (kb) 5612 5613Strain fitness (log2 ratio) -3 -2 -1 0 1at 5611.105 kb on + strand, within Pf1N1B4_5065at 5611.648 kb on + strand, within Pf1N1B4_5065at 5611.722 kb on + strandat 5611.875 kb on - strandat 5612.030 kb on - strandat 5612.957 kb on + strandat 5612.982 kb on + strandat 5613.049 kb on + strandat 5613.521 kb on + strand, within Pf1N1B4_5067at 5613.522 kb on - strand, within Pf1N1B4_5067at 5613.522 kb on - strand, within Pf1N1B4_5067at 5613.522 kb on - strand, within Pf1N1B4_5067at 5613.522 kb on - strand, within Pf1N1B4_5067at 5613.522 kb on - strand, within Pf1N1B4_5067at 5613.522 kb on - strand, within Pf1N1B4_5067

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source Sucrose 0.25mM
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5,611,105 + Pf1N1B4_5065 0.16 +0.9
5,611,648 + Pf1N1B4_5065 0.83 +0.3
5,611,722 + -0.7
5,611,875 - -1.9
5,612,030 - +0.4
5,612,957 + -2.9
5,612,982 + +0.4
5,613,049 + -1.9
5,613,521 + Pf1N1B4_5067 0.72 -0.7
5,613,522 - Pf1N1B4_5067 0.72 +0.6
5,613,522 - Pf1N1B4_5067 0.72 +0.3
5,613,522 - Pf1N1B4_5067 0.72 -2.2
5,613,522 - Pf1N1B4_5067 0.72 +0.1
5,613,522 - Pf1N1B4_5067 0.72 -2.1
5,613,522 - Pf1N1B4_5067 0.72 -0.4

Or see this region's nucleotide sequence