Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4064

Experiment: KB with Gossypol-Acetic Acid Complex 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4063 and Psyr_4064 are separated by 61 nucleotidesPsyr_4064 and Psyr_4065 are separated by 16 nucleotides Psyr_4063: Psyr_4063 - Protein of unknown function DUF1111, at 4,847,035 to 4,848,462 _4063 Psyr_4064: Psyr_4064 - lipoprotein, putative, at 4,848,524 to 4,849,588 _4064 Psyr_4065: Psyr_4065 - Protein of unknown function DUF1513, at 4,849,605 to 4,850,711 _4065 Position (kb) 4848 4849 4850Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4847.543 kb on - strand, within Psyr_4063at 4847.543 kb on - strand, within Psyr_4063at 4848.016 kb on + strand, within Psyr_4063at 4848.016 kb on + strand, within Psyr_4063at 4848.016 kb on + strand, within Psyr_4063at 4848.016 kb on + strand, within Psyr_4063at 4848.017 kb on - strand, within Psyr_4063at 4848.017 kb on - strand, within Psyr_4063at 4848.017 kb on - strand, within Psyr_4063at 4848.017 kb on - strand, within Psyr_4063at 4848.511 kb on + strandat 4848.511 kb on + strandat 4848.512 kb on - strandat 4848.644 kb on + strand, within Psyr_4064at 4848.644 kb on + strand, within Psyr_4064at 4848.644 kb on + strand, within Psyr_4064at 4848.644 kb on + strand, within Psyr_4064at 4848.645 kb on - strand, within Psyr_4064at 4848.645 kb on - strand, within Psyr_4064at 4848.819 kb on + strand, within Psyr_4064at 4848.819 kb on + strand, within Psyr_4064at 4848.820 kb on - strand, within Psyr_4064at 4848.820 kb on - strand, within Psyr_4064at 4848.820 kb on - strand, within Psyr_4064at 4848.820 kb on - strand, within Psyr_4064at 4848.944 kb on + strand, within Psyr_4064at 4848.950 kb on + strand, within Psyr_4064at 4848.950 kb on + strand, within Psyr_4064at 4848.950 kb on + strand, within Psyr_4064at 4848.950 kb on + strand, within Psyr_4064at 4848.950 kb on + strand, within Psyr_4064at 4848.950 kb on + strand, within Psyr_4064at 4848.950 kb on + strand, within Psyr_4064at 4848.950 kb on + strand, within Psyr_4064at 4848.950 kb on + strand, within Psyr_4064at 4848.950 kb on + strand, within Psyr_4064at 4848.950 kb on + strand, within Psyr_4064at 4848.950 kb on + strand, within Psyr_4064at 4848.951 kb on - strand, within Psyr_4064at 4848.951 kb on - strand, within Psyr_4064at 4848.951 kb on - strand, within Psyr_4064at 4848.951 kb on - strand, within Psyr_4064at 4848.951 kb on - strand, within Psyr_4064at 4848.951 kb on - strand, within Psyr_4064at 4848.951 kb on - strand, within Psyr_4064at 4848.951 kb on - strand, within Psyr_4064at 4848.951 kb on - strand, within Psyr_4064at 4848.951 kb on - strand, within Psyr_4064at 4848.951 kb on - strand, within Psyr_4064at 4848.951 kb on - strand, within Psyr_4064at 4848.951 kb on - strand, within Psyr_4064at 4849.597 kb on + strandat 4849.597 kb on + strandat 4849.597 kb on + strandat 4849.597 kb on + strandat 4849.597 kb on + strandat 4849.597 kb on + strandat 4849.597 kb on + strandat 4849.598 kb on - strandat 4849.598 kb on - strandat 4849.598 kb on - strandat 4849.598 kb on - strandat 4849.598 kb on - strandat 4849.598 kb on - strandat 4849.598 kb on - strandat 4849.598 kb on - strandat 4849.598 kb on - strandat 4849.598 kb on - strandat 4849.598 kb on - strandat 4849.741 kb on - strand, within Psyr_4065at 4849.774 kb on + strand, within Psyr_4065at 4849.862 kb on + strand, within Psyr_4065at 4849.862 kb on + strand, within Psyr_4065at 4849.863 kb on - strand, within Psyr_4065at 4849.872 kb on + strand, within Psyr_4065at 4849.872 kb on + strand, within Psyr_4065at 4849.872 kb on + strand, within Psyr_4065at 4849.873 kb on - strand, within Psyr_4065at 4849.938 kb on + strand, within Psyr_4065at 4849.939 kb on - strand, within Psyr_4065at 4849.939 kb on - strand, within Psyr_4065at 4849.978 kb on - strand, within Psyr_4065at 4850.017 kb on + strand, within Psyr_4065at 4850.269 kb on + strand, within Psyr_4065at 4850.427 kb on + strand, within Psyr_4065at 4850.428 kb on - strand, within Psyr_4065at 4850.428 kb on - strand, within Psyr_4065at 4850.428 kb on - strand, within Psyr_4065at 4850.428 kb on - strand, within Psyr_4065at 4850.446 kb on + strand, within Psyr_4065at 4850.447 kb on - strand, within Psyr_4065

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Gossypol-Acetic Acid Complex 10 mM
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4,847,543 - Psyr_4063 0.36 -0.8
4,847,543 - Psyr_4063 0.36 -1.4
4,848,016 + Psyr_4063 0.69 -1.7
4,848,016 + Psyr_4063 0.69 -1.4
4,848,016 + Psyr_4063 0.69 -0.4
4,848,016 + Psyr_4063 0.69 -0.1
4,848,017 - Psyr_4063 0.69 -0.6
4,848,017 - Psyr_4063 0.69 +0.6
4,848,017 - Psyr_4063 0.69 -1.6
4,848,017 - Psyr_4063 0.69 +0.1
4,848,511 + -1.2
4,848,511 + +0.3
4,848,512 - +0.1
4,848,644 + Psyr_4064 0.11 -1.8
4,848,644 + Psyr_4064 0.11 -0.8
4,848,644 + Psyr_4064 0.11 +0.5
4,848,644 + Psyr_4064 0.11 -0.6
4,848,645 - Psyr_4064 0.11 +0.3
4,848,645 - Psyr_4064 0.11 +1.2
4,848,819 + Psyr_4064 0.28 -1.6
4,848,819 + Psyr_4064 0.28 +0.7
4,848,820 - Psyr_4064 0.28 -2.4
4,848,820 - Psyr_4064 0.28 +0.2
4,848,820 - Psyr_4064 0.28 -0.3
4,848,820 - Psyr_4064 0.28 -0.7
4,848,944 + Psyr_4064 0.39 -1.2
4,848,950 + Psyr_4064 0.40 +0.8
4,848,950 + Psyr_4064 0.40 -0.5
4,848,950 + Psyr_4064 0.40 -0.4
4,848,950 + Psyr_4064 0.40 -0.9
4,848,950 + Psyr_4064 0.40 -0.4
4,848,950 + Psyr_4064 0.40 -0.9
4,848,950 + Psyr_4064 0.40 -0.4
4,848,950 + Psyr_4064 0.40 +2.8
4,848,950 + Psyr_4064 0.40 -1.4
4,848,950 + Psyr_4064 0.40 -0.4
4,848,950 + Psyr_4064 0.40 -0.5
4,848,950 + Psyr_4064 0.40 +1.0
4,848,951 - Psyr_4064 0.40 -1.4
4,848,951 - Psyr_4064 0.40 -1.1
4,848,951 - Psyr_4064 0.40 -2.0
4,848,951 - Psyr_4064 0.40 -1.1
4,848,951 - Psyr_4064 0.40 -0.5
4,848,951 - Psyr_4064 0.40 -0.8
4,848,951 - Psyr_4064 0.40 -0.4
4,848,951 - Psyr_4064 0.40 -1.4
4,848,951 - Psyr_4064 0.40 -0.6
4,848,951 - Psyr_4064 0.40 +0.1
4,848,951 - Psyr_4064 0.40 +1.0
4,848,951 - Psyr_4064 0.40 +0.2
4,848,951 - Psyr_4064 0.40 -0.6
4,849,597 + +1.2
4,849,597 + -0.4
4,849,597 + +0.2
4,849,597 + -0.4
4,849,597 + -0.0
4,849,597 + +0.7
4,849,597 + -0.0
4,849,598 - +1.7
4,849,598 - -0.1
4,849,598 - -0.3
4,849,598 - -1.4
4,849,598 - -0.3
4,849,598 - -0.7
4,849,598 - +0.3
4,849,598 - -1.8
4,849,598 - -0.1
4,849,598 - -1.3
4,849,598 - -1.1
4,849,741 - Psyr_4065 0.12 -0.8
4,849,774 + Psyr_4065 0.15 -0.9
4,849,862 + Psyr_4065 0.23 -0.4
4,849,862 + Psyr_4065 0.23 +0.5
4,849,863 - Psyr_4065 0.23 +1.8
4,849,872 + Psyr_4065 0.24 -0.9
4,849,872 + Psyr_4065 0.24 +0.4
4,849,872 + Psyr_4065 0.24 +0.9
4,849,873 - Psyr_4065 0.24 -0.7
4,849,938 + Psyr_4065 0.30 +0.1
4,849,939 - Psyr_4065 0.30 +0.3
4,849,939 - Psyr_4065 0.30 -0.2
4,849,978 - Psyr_4065 0.34 +0.7
4,850,017 + Psyr_4065 0.37 -0.2
4,850,269 + Psyr_4065 0.60 +0.6
4,850,427 + Psyr_4065 0.74 -0.5
4,850,428 - Psyr_4065 0.74 -0.7
4,850,428 - Psyr_4065 0.74 -1.4
4,850,428 - Psyr_4065 0.74 -0.8
4,850,428 - Psyr_4065 0.74 -0.1
4,850,446 + Psyr_4065 0.76 -1.1
4,850,447 - Psyr_4065 0.76 -0.1

Or see this region's nucleotide sequence