Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4061

Experiment: KB with Gossypol-Acetic Acid Complex 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4060 and Psyr_4061 are separated by 180 nucleotidesPsyr_4061 and Psyr_4062 are separated by 130 nucleotidesPsyr_4062 and Psyr_4063 are separated by 226 nucleotides Psyr_4060: Psyr_4060 - diguanylate cyclase/phosphodiesterase, at 4,842,374 to 4,844,491 _4060 Psyr_4061: Psyr_4061 - imelysin, Metallo peptidase, MEROPS family M75, at 4,844,672 to 4,846,048 _4061 Psyr_4062: Psyr_4062 - Pyridoxamine 5'-phosphate oxidase-related protein, at 4,846,179 to 4,846,808 _4062 Psyr_4063: Psyr_4063 - Protein of unknown function DUF1111, at 4,847,035 to 4,848,462 _4063 Position (kb) 4844 4845 4846 4847Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4843.755 kb on - strand, within Psyr_4060at 4843.755 kb on - strand, within Psyr_4060at 4843.755 kb on - strand, within Psyr_4060at 4843.755 kb on - strand, within Psyr_4060at 4843.763 kb on + strand, within Psyr_4060at 4843.764 kb on - strand, within Psyr_4060at 4843.764 kb on - strand, within Psyr_4060at 4843.860 kb on + strand, within Psyr_4060at 4843.860 kb on + strand, within Psyr_4060at 4843.860 kb on + strand, within Psyr_4060at 4843.860 kb on + strand, within Psyr_4060at 4843.860 kb on + strand, within Psyr_4060at 4843.860 kb on + strand, within Psyr_4060at 4843.860 kb on + strand, within Psyr_4060at 4843.860 kb on + strand, within Psyr_4060at 4843.860 kb on + strand, within Psyr_4060at 4843.860 kb on + strand, within Psyr_4060at 4843.860 kb on + strand, within Psyr_4060at 4843.860 kb on + strand, within Psyr_4060at 4843.861 kb on - strand, within Psyr_4060at 4843.861 kb on - strand, within Psyr_4060at 4843.861 kb on - strand, within Psyr_4060at 4844.052 kb on - strand, within Psyr_4060at 4844.110 kb on + strand, within Psyr_4060at 4844.110 kb on + strand, within Psyr_4060at 4844.110 kb on + strand, within Psyr_4060at 4844.110 kb on + strand, within Psyr_4060at 4844.111 kb on - strand, within Psyr_4060at 4844.111 kb on - strand, within Psyr_4060at 4844.111 kb on - strand, within Psyr_4060at 4844.111 kb on - strand, within Psyr_4060at 4844.111 kb on - strand, within Psyr_4060at 4844.205 kb on - strand, within Psyr_4060at 4844.284 kb on + strandat 4844.284 kb on + strandat 4844.284 kb on + strandat 4844.285 kb on - strandat 4844.285 kb on - strandat 4844.285 kb on - strandat 4844.285 kb on - strandat 4844.287 kb on + strandat 4844.372 kb on + strandat 4844.372 kb on + strandat 4844.372 kb on + strandat 4844.372 kb on + strandat 4844.372 kb on + strandat 4844.372 kb on + strandat 4844.372 kb on + strandat 4844.372 kb on + strandat 4844.373 kb on - strandat 4844.373 kb on - strandat 4844.373 kb on - strandat 4844.373 kb on - strandat 4844.373 kb on - strandat 4844.373 kb on - strandat 4844.373 kb on - strandat 4844.373 kb on - strandat 4844.373 kb on - strandat 4844.408 kb on + strandat 4844.409 kb on - strandat 4844.415 kb on - strandat 4844.451 kb on - strandat 4844.451 kb on - strandat 4844.451 kb on - strandat 4844.451 kb on - strandat 4844.540 kb on + strandat 4844.540 kb on + strandat 4844.540 kb on + strandat 4844.540 kb on + strandat 4844.540 kb on + strandat 4844.541 kb on - strandat 4844.541 kb on - strandat 4844.680 kb on + strandat 4844.681 kb on - strandat 4844.681 kb on - strandat 4844.681 kb on - strandat 4844.699 kb on - strandat 4844.716 kb on + strandat 4844.717 kb on - strandat 4844.894 kb on + strandat 4844.894 kb on + strand, within Psyr_4061at 4844.895 kb on - strand, within Psyr_4061at 4844.895 kb on - strand, within Psyr_4061at 4844.895 kb on - strand, within Psyr_4061at 4844.895 kb on - strand, within Psyr_4061at 4844.895 kb on - strand, within Psyr_4061at 4845.039 kb on - strand, within Psyr_4061at 4845.039 kb on - strand, within Psyr_4061at 4845.039 kb on - strand, within Psyr_4061at 4845.134 kb on + strand, within Psyr_4061at 4845.134 kb on + strand, within Psyr_4061at 4845.134 kb on + strand, within Psyr_4061at 4845.134 kb on + strand, within Psyr_4061at 4845.149 kb on + strand, within Psyr_4061at 4845.440 kb on + strand, within Psyr_4061at 4845.441 kb on - strand, within Psyr_4061at 4845.521 kb on + strand, within Psyr_4061at 4845.521 kb on + strand, within Psyr_4061at 4845.677 kb on - strand, within Psyr_4061at 4845.698 kb on + strand, within Psyr_4061at 4845.699 kb on - strand, within Psyr_4061at 4845.699 kb on - strand, within Psyr_4061at 4845.725 kb on + strand, within Psyr_4061at 4845.726 kb on - strand, within Psyr_4061at 4845.737 kb on + strand, within Psyr_4061at 4846.183 kb on + strandat 4846.183 kb on + strandat 4846.183 kb on + strandat 4846.183 kb on + strandat 4846.184 kb on - strandat 4846.184 kb on - strandat 4846.184 kb on - strandat 4846.184 kb on - strandat 4846.184 kb on - strandat 4846.184 kb on - strandat 4846.184 kb on - strandat 4846.184 kb on - strandat 4846.190 kb on + strandat 4846.223 kb on - strandat 4846.354 kb on + strand, within Psyr_4062at 4846.355 kb on - strand, within Psyr_4062at 4846.441 kb on - strand, within Psyr_4062at 4846.570 kb on + strand, within Psyr_4062at 4846.570 kb on + strand, within Psyr_4062at 4846.694 kb on - strand, within Psyr_4062at 4846.750 kb on + strandat 4846.750 kb on + strandat 4846.750 kb on + strandat 4846.750 kb on + strandat 4846.750 kb on + strandat 4846.750 kb on + strandat 4846.750 kb on + strandat 4846.751 kb on - strandat 4846.835 kb on + strandat 4846.835 kb on + strandat 4846.835 kb on + strandat 4846.835 kb on + strandat 4846.835 kb on + strandat 4846.835 kb on + strandat 4846.835 kb on + strandat 4846.836 kb on - strandat 4846.836 kb on - strandat 4846.836 kb on - strandat 4846.836 kb on - strandat 4846.836 kb on - strandat 4846.889 kb on - strandat 4846.889 kb on - strandat 4846.889 kb on - strandat 4846.992 kb on + strandat 4846.992 kb on + strandat 4846.993 kb on - strandat 4847.034 kb on + strandat 4847.035 kb on - strandat 4847.035 kb on - strandat 4847.035 kb on - strandat 4847.035 kb on - strandat 4847.035 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Gossypol-Acetic Acid Complex 10 mM
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4,843,755 - Psyr_4060 0.65 -0.5
4,843,755 - Psyr_4060 0.65 -0.3
4,843,755 - Psyr_4060 0.65 -0.4
4,843,755 - Psyr_4060 0.65 +0.7
4,843,763 + Psyr_4060 0.66 -0.3
4,843,764 - Psyr_4060 0.66 +0.2
4,843,764 - Psyr_4060 0.66 +0.1
4,843,860 + Psyr_4060 0.70 -1.2
4,843,860 + Psyr_4060 0.70 -0.1
4,843,860 + Psyr_4060 0.70 +0.3
4,843,860 + Psyr_4060 0.70 +0.5
4,843,860 + Psyr_4060 0.70 +0.1
4,843,860 + Psyr_4060 0.70 +0.2
4,843,860 + Psyr_4060 0.70 +0.2
4,843,860 + Psyr_4060 0.70 +1.3
4,843,860 + Psyr_4060 0.70 -1.1
4,843,860 + Psyr_4060 0.70 -0.0
4,843,860 + Psyr_4060 0.70 -0.1
4,843,860 + Psyr_4060 0.70 +0.2
4,843,861 - Psyr_4060 0.70 +0.4
4,843,861 - Psyr_4060 0.70 -0.4
4,843,861 - Psyr_4060 0.70 +0.9
4,844,052 - Psyr_4060 0.79 -1.8
4,844,110 + Psyr_4060 0.82 +1.7
4,844,110 + Psyr_4060 0.82 -0.4
4,844,110 + Psyr_4060 0.82 +0.2
4,844,110 + Psyr_4060 0.82 -0.4
4,844,111 - Psyr_4060 0.82 -0.5
4,844,111 - Psyr_4060 0.82 +0.8
4,844,111 - Psyr_4060 0.82 -0.1
4,844,111 - Psyr_4060 0.82 -1.1
4,844,111 - Psyr_4060 0.82 -0.1
4,844,205 - Psyr_4060 0.86 -0.7
4,844,284 + -0.4
4,844,284 + +1.6
4,844,284 + -0.2
4,844,285 - +0.1
4,844,285 - +0.5
4,844,285 - -0.2
4,844,285 - +0.1
4,844,287 + -0.7
4,844,372 + +0.6
4,844,372 + +0.2
4,844,372 + +0.3
4,844,372 + +1.0
4,844,372 + +0.6
4,844,372 + +1.2
4,844,372 + -0.3
4,844,372 + +0.6
4,844,373 - -1.1
4,844,373 - -2.2
4,844,373 - +0.6
4,844,373 - -1.1
4,844,373 - -0.4
4,844,373 - -0.4
4,844,373 - -0.2
4,844,373 - -2.4
4,844,373 - +2.2
4,844,408 + -0.2
4,844,409 - -0.4
4,844,415 - -0.7
4,844,451 - +0.2
4,844,451 - -0.5
4,844,451 - +1.8
4,844,451 - -0.3
4,844,540 + +0.3
4,844,540 + +0.8
4,844,540 + +0.5
4,844,540 + -0.5
4,844,540 + +0.2
4,844,541 - -0.9
4,844,541 - -0.1
4,844,680 + -0.8
4,844,681 - +1.8
4,844,681 - -2.6
4,844,681 - -0.1
4,844,699 - -1.9
4,844,716 + -2.9
4,844,717 - -0.9
4,844,894 + -1.4
4,844,894 + Psyr_4061 0.16 -0.1
4,844,895 - Psyr_4061 0.16 +0.3
4,844,895 - Psyr_4061 0.16 -1.5
4,844,895 - Psyr_4061 0.16 +0.0
4,844,895 - Psyr_4061 0.16 -1.6
4,844,895 - Psyr_4061 0.16 -1.4
4,845,039 - Psyr_4061 0.27 +0.5
4,845,039 - Psyr_4061 0.27 -3.0
4,845,039 - Psyr_4061 0.27 +0.0
4,845,134 + Psyr_4061 0.34 -2.6
4,845,134 + Psyr_4061 0.34 +0.6
4,845,134 + Psyr_4061 0.34 +0.7
4,845,134 + Psyr_4061 0.34 +0.6
4,845,149 + Psyr_4061 0.35 -0.7
4,845,440 + Psyr_4061 0.56 -2.9
4,845,441 - Psyr_4061 0.56 -0.7
4,845,521 + Psyr_4061 0.62 -0.4
4,845,521 + Psyr_4061 0.62 -0.7
4,845,677 - Psyr_4061 0.73 -0.8
4,845,698 + Psyr_4061 0.75 -0.7
4,845,699 - Psyr_4061 0.75 -1.4
4,845,699 - Psyr_4061 0.75 +1.2
4,845,725 + Psyr_4061 0.76 -1.1
4,845,726 - Psyr_4061 0.77 -0.4
4,845,737 + Psyr_4061 0.77 -0.4
4,846,183 + -0.1
4,846,183 + -1.5
4,846,183 + -0.4
4,846,183 + -0.3
4,846,184 - +0.8
4,846,184 - +0.5
4,846,184 - -0.2
4,846,184 - +0.2
4,846,184 - +0.4
4,846,184 - -0.1
4,846,184 - -1.1
4,846,184 - -0.3
4,846,190 + +0.2
4,846,223 - -1.0
4,846,354 + Psyr_4062 0.28 -0.6
4,846,355 - Psyr_4062 0.28 +0.4
4,846,441 - Psyr_4062 0.42 -0.4
4,846,570 + Psyr_4062 0.62 +0.3
4,846,570 + Psyr_4062 0.62 +0.5
4,846,694 - Psyr_4062 0.82 +0.3
4,846,750 + +1.0
4,846,750 + -0.2
4,846,750 + -2.1
4,846,750 + +0.7
4,846,750 + -1.0
4,846,750 + +0.4
4,846,750 + -0.3
4,846,751 - -0.7
4,846,835 + +2.1
4,846,835 + -0.6
4,846,835 + -1.8
4,846,835 + -0.6
4,846,835 + -0.6
4,846,835 + -1.6
4,846,835 + +0.8
4,846,836 - +0.7
4,846,836 - +0.6
4,846,836 - +0.1
4,846,836 - -0.0
4,846,836 - +1.2
4,846,889 - +0.2
4,846,889 - -1.4
4,846,889 - -2.5
4,846,992 + -1.5
4,846,992 + +1.4
4,846,993 - +2.5
4,847,034 + +0.1
4,847,035 - -0.2
4,847,035 - -0.7
4,847,035 - -1.5
4,847,035 - -1.2
4,847,035 - -0.4

Or see this region's nucleotide sequence