Experiment: KB with Gossypol-Acetic Acid Complex 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3031 and Psyr_3032 are separated by 190 nucleotides Psyr_3032 and Psyr_3033 are separated by 129 nucleotides Psyr_3033 and Psyr_3034 are separated by 879 nucleotides
Psyr_3031: Psyr_3031 - Thiolase, at 3,629,478 to 3,630,686
_3031
Psyr_3032: Psyr_3032 - lipoprotein, putative, at 3,630,877 to 3,631,356
_3032
Psyr_3033: Psyr_3033 - conserved domain protein, at 3,631,486 to 3,632,364
_3033
Psyr_3034: Psyr_3034 - conserved hypothetical protein, at 3,633,244 to 3,633,555
_3034
Position (kb)
3631
3632
3633 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3630.690 kb on + strand at 3630.691 kb on - strand at 3630.787 kb on - strand at 3631.069 kb on + strand, within Psyr_3032 at 3631.069 kb on + strand, within Psyr_3032 at 3631.070 kb on - strand, within Psyr_3032 at 3631.145 kb on + strand, within Psyr_3032 at 3631.145 kb on + strand, within Psyr_3032 at 3631.146 kb on - strand, within Psyr_3032 at 3631.146 kb on - strand, within Psyr_3032 at 3631.146 kb on - strand, within Psyr_3032 at 3631.146 kb on - strand, within Psyr_3032 at 3631.224 kb on + strand, within Psyr_3032 at 3631.255 kb on + strand, within Psyr_3032 at 3631.256 kb on - strand, within Psyr_3032 at 3631.258 kb on - strand, within Psyr_3032 at 3631.355 kb on - strand at 3631.374 kb on + strand at 3631.643 kb on + strand, within Psyr_3033 at 3631.644 kb on - strand, within Psyr_3033 at 3631.644 kb on - strand, within Psyr_3033 at 3631.666 kb on + strand, within Psyr_3033 at 3631.666 kb on + strand, within Psyr_3033 at 3631.667 kb on - strand, within Psyr_3033 at 3631.705 kb on + strand, within Psyr_3033 at 3631.711 kb on + strand, within Psyr_3033 at 3631.723 kb on + strand, within Psyr_3033 at 3631.724 kb on - strand, within Psyr_3033 at 3631.787 kb on - strand, within Psyr_3033 at 3631.787 kb on - strand, within Psyr_3033 at 3631.999 kb on + strand, within Psyr_3033 at 3631.999 kb on + strand, within Psyr_3033 at 3631.999 kb on + strand, within Psyr_3033 at 3631.999 kb on + strand, within Psyr_3033 at 3631.999 kb on + strand, within Psyr_3033 at 3632.248 kb on + strand, within Psyr_3033 at 3632.248 kb on + strand, within Psyr_3033 at 3632.248 kb on + strand, within Psyr_3033 at 3632.335 kb on + strand at 3632.336 kb on - strand at 3632.338 kb on + strand at 3632.338 kb on + strand at 3632.338 kb on + strand at 3632.338 kb on + strand at 3632.339 kb on - strand at 3632.339 kb on - strand at 3632.363 kb on - strand at 3632.560 kb on - strand at 3632.580 kb on + strand at 3632.580 kb on + strand at 3632.580 kb on + strand at 3632.581 kb on - strand at 3632.581 kb on - strand at 3632.695 kb on + strand at 3632.695 kb on + strand at 3632.698 kb on + strand at 3632.698 kb on + strand at 3632.725 kb on - strand at 3632.730 kb on + strand at 3632.731 kb on - strand at 3632.912 kb on + strand at 3633.178 kb on + strand at 3633.184 kb on + strand at 3633.184 kb on + strand at 3633.185 kb on - strand at 3633.269 kb on + strand at 3633.306 kb on + strand, within Psyr_3034 at 3633.307 kb on - strand, within Psyr_3034 at 3633.307 kb on - strand, within Psyr_3034 at 3633.307 kb on - strand, within Psyr_3034 at 3633.335 kb on + strand, within Psyr_3034
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Gossypol-Acetic Acid Complex 10 mM remove 3,630,690 + -1.1 3,630,691 - +0.3 3,630,787 - -0.6 3,631,069 + Psyr_3032 0.40 -0.2 3,631,069 + Psyr_3032 0.40 +0.6 3,631,070 - Psyr_3032 0.40 -0.3 3,631,145 + Psyr_3032 0.56 -0.4 3,631,145 + Psyr_3032 0.56 +0.5 3,631,146 - Psyr_3032 0.56 -1.1 3,631,146 - Psyr_3032 0.56 +1.5 3,631,146 - Psyr_3032 0.56 -0.6 3,631,146 - Psyr_3032 0.56 -0.1 3,631,224 + Psyr_3032 0.72 -0.6 3,631,255 + Psyr_3032 0.79 +0.5 3,631,256 - Psyr_3032 0.79 +0.7 3,631,258 - Psyr_3032 0.79 +0.0 3,631,355 - -0.7 3,631,374 + -0.3 3,631,643 + Psyr_3033 0.18 +0.3 3,631,644 - Psyr_3033 0.18 +0.3 3,631,644 - Psyr_3033 0.18 -0.9 3,631,666 + Psyr_3033 0.20 -0.4 3,631,666 + Psyr_3033 0.20 +1.0 3,631,667 - Psyr_3033 0.21 -0.4 3,631,705 + Psyr_3033 0.25 -0.9 3,631,711 + Psyr_3033 0.26 +0.4 3,631,723 + Psyr_3033 0.27 +0.8 3,631,724 - Psyr_3033 0.27 -0.9 3,631,787 - Psyr_3033 0.34 +0.4 3,631,787 - Psyr_3033 0.34 +0.2 3,631,999 + Psyr_3033 0.58 -0.2 3,631,999 + Psyr_3033 0.58 +1.7 3,631,999 + Psyr_3033 0.58 -0.2 3,631,999 + Psyr_3033 0.58 +0.6 3,631,999 + Psyr_3033 0.58 +1.0 3,632,248 + Psyr_3033 0.87 +1.4 3,632,248 + Psyr_3033 0.87 +0.3 3,632,248 + Psyr_3033 0.87 +0.8 3,632,335 + -0.8 3,632,336 - +0.6 3,632,338 + -0.1 3,632,338 + -0.8 3,632,338 + +0.5 3,632,338 + -0.0 3,632,339 - -0.1 3,632,339 - +0.0 3,632,363 - +2.0 3,632,560 - -1.9 3,632,580 + -1.9 3,632,580 + -0.1 3,632,580 + -0.4 3,632,581 - +0.1 3,632,581 - +0.0 3,632,695 + +0.1 3,632,695 + -0.2 3,632,698 + -0.7 3,632,698 + -1.0 3,632,725 - +1.0 3,632,730 + +0.2 3,632,731 - +0.3 3,632,912 + -0.6 3,633,178 + +0.1 3,633,184 + -0.3 3,633,184 + -1.6 3,633,185 - -0.5 3,633,269 + -1.6 3,633,306 + Psyr_3034 0.20 +0.5 3,633,307 - Psyr_3034 0.20 +0.2 3,633,307 - Psyr_3034 0.20 -1.6 3,633,307 - Psyr_3034 0.20 -0.3 3,633,335 + Psyr_3034 0.29 -1.0
Or see this region's nucleotide sequence