Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2723

Experiment: KB with Gossypol-Acetic Acid Complex 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2721 and Psyr_2722 are separated by 86 nucleotidesPsyr_2722 and Psyr_2723 are separated by 155 nucleotidesPsyr_2723 and Psyr_2724 are separated by 131 nucleotidesPsyr_2724 and Psyr_2725 are separated by 18 nucleotides Psyr_2721: Psyr_2721 - Protein of unknown function DUF213, at 3,303,315 to 3,304,187 _2721 Psyr_2722: Psyr_2722 - LamB/YcsF, at 3,304,274 to 3,305,029 _2722 Psyr_2723: Psyr_2723 - transcriptional regulator, LysR family, at 3,305,185 to 3,306,102 _2723 Psyr_2724: Psyr_2724 - conserved hypothetical protein, at 3,306,234 to 3,306,689 _2724 Psyr_2725: Psyr_2725 - Thiolase, at 3,306,708 to 3,307,970 _2725 Position (kb) 3305 3306 3307Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3304.213 kb on + strandat 3304.214 kb on - strandat 3304.272 kb on - strandat 3304.412 kb on - strand, within Psyr_2722at 3304.478 kb on + strand, within Psyr_2722at 3304.479 kb on - strand, within Psyr_2722at 3304.479 kb on - strand, within Psyr_2722at 3304.530 kb on + strand, within Psyr_2722at 3304.530 kb on + strand, within Psyr_2722at 3304.530 kb on + strand, within Psyr_2722at 3304.600 kb on - strand, within Psyr_2722at 3304.600 kb on - strand, within Psyr_2722at 3304.680 kb on + strand, within Psyr_2722at 3304.680 kb on + strand, within Psyr_2722at 3304.680 kb on + strand, within Psyr_2722at 3304.680 kb on + strand, within Psyr_2722at 3304.680 kb on + strand, within Psyr_2722at 3304.680 kb on + strand, within Psyr_2722at 3304.680 kb on + strand, within Psyr_2722at 3304.680 kb on + strand, within Psyr_2722at 3304.680 kb on + strand, within Psyr_2722at 3304.680 kb on + strand, within Psyr_2722at 3304.681 kb on - strand, within Psyr_2722at 3304.681 kb on - strand, within Psyr_2722at 3304.681 kb on - strand, within Psyr_2722at 3304.681 kb on - strand, within Psyr_2722at 3304.681 kb on - strand, within Psyr_2722at 3304.681 kb on - strand, within Psyr_2722at 3304.681 kb on - strand, within Psyr_2722at 3304.681 kb on - strand, within Psyr_2722at 3304.681 kb on - strand, within Psyr_2722at 3304.681 kb on - strand, within Psyr_2722at 3304.681 kb on - strand, within Psyr_2722at 3304.681 kb on - strand, within Psyr_2722at 3304.681 kb on - strand, within Psyr_2722at 3304.798 kb on + strand, within Psyr_2722at 3304.798 kb on + strand, within Psyr_2722at 3304.798 kb on + strand, within Psyr_2722at 3304.798 kb on + strand, within Psyr_2722at 3304.798 kb on + strand, within Psyr_2722at 3304.798 kb on + strand, within Psyr_2722at 3304.798 kb on + strand, within Psyr_2722at 3304.799 kb on - strand, within Psyr_2722at 3304.942 kb on + strand, within Psyr_2722at 3304.944 kb on + strand, within Psyr_2722at 3304.944 kb on + strand, within Psyr_2722at 3304.944 kb on + strand, within Psyr_2722at 3304.944 kb on + strand, within Psyr_2722at 3304.944 kb on + strand, within Psyr_2722at 3304.944 kb on + strand, within Psyr_2722at 3304.944 kb on + strand, within Psyr_2722at 3304.944 kb on + strand, within Psyr_2722at 3304.944 kb on + strand, within Psyr_2722at 3304.944 kb on + strand, within Psyr_2722at 3304.945 kb on - strand, within Psyr_2722at 3304.945 kb on - strand, within Psyr_2722at 3304.945 kb on - strand, within Psyr_2722at 3304.945 kb on - strand, within Psyr_2722at 3304.945 kb on - strand, within Psyr_2722at 3304.945 kb on - strand, within Psyr_2722at 3304.945 kb on - strand, within Psyr_2722at 3304.945 kb on - strand, within Psyr_2722at 3304.945 kb on - strand, within Psyr_2722at 3304.945 kb on - strand, within Psyr_2722at 3304.945 kb on - strand, within Psyr_2722at 3304.945 kb on - strand, within Psyr_2722at 3305.112 kb on - strandat 3305.117 kb on + strandat 3305.117 kb on + strandat 3305.184 kb on + strandat 3305.184 kb on + strandat 3305.184 kb on + strandat 3305.184 kb on + strandat 3305.184 kb on + strandat 3305.184 kb on + strandat 3305.185 kb on - strandat 3305.185 kb on - strandat 3305.185 kb on - strandat 3305.185 kb on - strandat 3305.185 kb on - strandat 3305.185 kb on - strandat 3305.185 kb on - strandat 3305.185 kb on - strandat 3305.185 kb on - strandat 3305.185 kb on - strandat 3305.185 kb on - strandat 3305.212 kb on + strandat 3305.313 kb on + strand, within Psyr_2723at 3305.314 kb on - strand, within Psyr_2723at 3305.395 kb on + strand, within Psyr_2723at 3305.462 kb on + strand, within Psyr_2723at 3305.483 kb on - strand, within Psyr_2723at 3305.483 kb on - strand, within Psyr_2723at 3305.483 kb on - strand, within Psyr_2723at 3305.652 kb on + strand, within Psyr_2723at 3305.656 kb on - strand, within Psyr_2723at 3305.656 kb on - strand, within Psyr_2723at 3305.761 kb on + strand, within Psyr_2723at 3305.761 kb on + strand, within Psyr_2723at 3305.761 kb on + strand, within Psyr_2723at 3305.762 kb on - strand, within Psyr_2723at 3305.762 kb on - strand, within Psyr_2723at 3305.762 kb on - strand, within Psyr_2723at 3305.762 kb on - strand, within Psyr_2723at 3305.762 kb on - strand, within Psyr_2723at 3305.763 kb on + strand, within Psyr_2723at 3306.053 kb on - strandat 3306.117 kb on - strandat 3306.155 kb on + strandat 3306.155 kb on + strandat 3306.155 kb on + strandat 3306.575 kb on + strand, within Psyr_2724at 3306.575 kb on + strand, within Psyr_2724at 3306.709 kb on + strandat 3306.727 kb on + strandat 3306.727 kb on + strandat 3306.728 kb on - strandat 3306.728 kb on - strandat 3306.728 kb on - strandat 3306.793 kb on + strandat 3306.843 kb on + strand, within Psyr_2725at 3306.843 kb on + strand, within Psyr_2725at 3306.843 kb on + strand, within Psyr_2725at 3306.844 kb on - strand, within Psyr_2725at 3306.931 kb on - strand, within Psyr_2725

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Gossypol-Acetic Acid Complex 10 mM
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3,304,213 + +0.7
3,304,214 - -1.3
3,304,272 - -0.5
3,304,412 - Psyr_2722 0.18 -0.3
3,304,478 + Psyr_2722 0.27 -0.1
3,304,479 - Psyr_2722 0.27 -0.1
3,304,479 - Psyr_2722 0.27 -0.2
3,304,530 + Psyr_2722 0.34 +0.4
3,304,530 + Psyr_2722 0.34 -0.1
3,304,530 + Psyr_2722 0.34 -0.5
3,304,600 - Psyr_2722 0.43 +0.5
3,304,600 - Psyr_2722 0.43 +0.6
3,304,680 + Psyr_2722 0.54 -3.6
3,304,680 + Psyr_2722 0.54 -0.5
3,304,680 + Psyr_2722 0.54 +0.5
3,304,680 + Psyr_2722 0.54 +0.7
3,304,680 + Psyr_2722 0.54 +0.1
3,304,680 + Psyr_2722 0.54 +1.1
3,304,680 + Psyr_2722 0.54 +0.6
3,304,680 + Psyr_2722 0.54 -0.8
3,304,680 + Psyr_2722 0.54 -1.0
3,304,680 + Psyr_2722 0.54 +0.1
3,304,681 - Psyr_2722 0.54 +0.1
3,304,681 - Psyr_2722 0.54 +0.1
3,304,681 - Psyr_2722 0.54 -0.4
3,304,681 - Psyr_2722 0.54 +0.5
3,304,681 - Psyr_2722 0.54 +2.1
3,304,681 - Psyr_2722 0.54 -0.9
3,304,681 - Psyr_2722 0.54 -0.6
3,304,681 - Psyr_2722 0.54 +0.5
3,304,681 - Psyr_2722 0.54 -1.5
3,304,681 - Psyr_2722 0.54 +0.5
3,304,681 - Psyr_2722 0.54 +1.8
3,304,681 - Psyr_2722 0.54 -1.0
3,304,681 - Psyr_2722 0.54 -0.2
3,304,798 + Psyr_2722 0.69 +0.4
3,304,798 + Psyr_2722 0.69 -1.0
3,304,798 + Psyr_2722 0.69 +1.6
3,304,798 + Psyr_2722 0.69 +0.5
3,304,798 + Psyr_2722 0.69 -0.6
3,304,798 + Psyr_2722 0.69 +0.2
3,304,798 + Psyr_2722 0.69 -0.4
3,304,799 - Psyr_2722 0.69 -0.2
3,304,942 + Psyr_2722 0.88 -1.5
3,304,944 + Psyr_2722 0.89 +0.3
3,304,944 + Psyr_2722 0.89 -0.4
3,304,944 + Psyr_2722 0.89 +1.1
3,304,944 + Psyr_2722 0.89 -0.1
3,304,944 + Psyr_2722 0.89 +0.2
3,304,944 + Psyr_2722 0.89 -0.9
3,304,944 + Psyr_2722 0.89 -0.8
3,304,944 + Psyr_2722 0.89 +0.8
3,304,944 + Psyr_2722 0.89 +1.1
3,304,944 + Psyr_2722 0.89 -1.0
3,304,945 - Psyr_2722 0.89 -1.3
3,304,945 - Psyr_2722 0.89 +0.2
3,304,945 - Psyr_2722 0.89 +0.9
3,304,945 - Psyr_2722 0.89 +0.8
3,304,945 - Psyr_2722 0.89 +0.2
3,304,945 - Psyr_2722 0.89 +0.8
3,304,945 - Psyr_2722 0.89 -0.5
3,304,945 - Psyr_2722 0.89 +0.5
3,304,945 - Psyr_2722 0.89 +1.4
3,304,945 - Psyr_2722 0.89 +2.6
3,304,945 - Psyr_2722 0.89 +2.9
3,304,945 - Psyr_2722 0.89 +0.1
3,305,112 - +0.3
3,305,117 + -0.6
3,305,117 + -0.2
3,305,184 + -0.9
3,305,184 + +0.7
3,305,184 + -0.9
3,305,184 + +0.8
3,305,184 + -1.2
3,305,184 + +0.2
3,305,185 - -0.5
3,305,185 - -0.8
3,305,185 - -0.7
3,305,185 - -0.5
3,305,185 - +0.9
3,305,185 - +0.4
3,305,185 - +0.6
3,305,185 - +0.8
3,305,185 - -1.2
3,305,185 - -1.7
3,305,185 - +0.5
3,305,212 + +0.1
3,305,313 + Psyr_2723 0.14 -0.9
3,305,314 - Psyr_2723 0.14 -0.5
3,305,395 + Psyr_2723 0.23 -1.0
3,305,462 + Psyr_2723 0.30 -1.7
3,305,483 - Psyr_2723 0.32 +0.1
3,305,483 - Psyr_2723 0.32 +1.1
3,305,483 - Psyr_2723 0.32 -1.5
3,305,652 + Psyr_2723 0.51 -0.3
3,305,656 - Psyr_2723 0.51 +0.1
3,305,656 - Psyr_2723 0.51 -0.2
3,305,761 + Psyr_2723 0.63 -0.1
3,305,761 + Psyr_2723 0.63 +0.6
3,305,761 + Psyr_2723 0.63 -0.2
3,305,762 - Psyr_2723 0.63 -1.7
3,305,762 - Psyr_2723 0.63 -0.5
3,305,762 - Psyr_2723 0.63 +0.1
3,305,762 - Psyr_2723 0.63 -0.0
3,305,762 - Psyr_2723 0.63 -0.2
3,305,763 + Psyr_2723 0.63 -0.5
3,306,053 - +1.3
3,306,117 - +0.4
3,306,155 + +0.8
3,306,155 + -0.7
3,306,155 + +0.1
3,306,575 + Psyr_2724 0.75 -0.3
3,306,575 + Psyr_2724 0.75 +0.8
3,306,709 + -0.3
3,306,727 + -0.1
3,306,727 + -0.1
3,306,728 - +0.1
3,306,728 - -0.5
3,306,728 - -0.8
3,306,793 + +0.4
3,306,843 + Psyr_2725 0.11 +0.2
3,306,843 + Psyr_2725 0.11 -0.2
3,306,843 + Psyr_2725 0.11 +0.2
3,306,844 - Psyr_2725 0.11 +0.8
3,306,931 - Psyr_2725 0.18 -0.4

Or see this region's nucleotide sequence