Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2155

Experiment: KB with Gossypol-Acetic Acid Complex 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2154 and Psyr_2155 are separated by 30 nucleotidesPsyr_2155 and Psyr_2156 overlap by 4 nucleotidesPsyr_2156 and Psyr_2157 are separated by 23 nucleotides Psyr_2154: Psyr_2154 - transcriptional regulator, LacI family, at 2,510,220 to 2,511,236 _2154 Psyr_2155: Psyr_2155 - Carbohydrate kinase, PfkB, at 2,511,267 to 2,512,187 _2155 Psyr_2156: Psyr_2156 - RbsD or FucU transport, at 2,512,184 to 2,512,588 _2156 Psyr_2157: Psyr_2157 - Inosine/uridine-preferring nucleoside hydrolase, at 2,512,612 to 2,513,637 _2157 Position (kb) 2511 2512 2513Strain fitness (log2 ratio) -3 -2 -1 0 1at 2510.352 kb on + strand, within Psyr_2154at 2510.352 kb on + strand, within Psyr_2154at 2510.353 kb on - strand, within Psyr_2154at 2510.436 kb on + strand, within Psyr_2154at 2510.437 kb on - strand, within Psyr_2154at 2510.539 kb on - strand, within Psyr_2154at 2510.629 kb on + strand, within Psyr_2154at 2510.629 kb on + strand, within Psyr_2154at 2510.630 kb on - strand, within Psyr_2154at 2510.630 kb on - strand, within Psyr_2154at 2510.630 kb on - strand, within Psyr_2154at 2510.633 kb on + strand, within Psyr_2154at 2510.633 kb on + strand, within Psyr_2154at 2510.633 kb on + strand, within Psyr_2154at 2510.633 kb on + strandat 2510.634 kb on - strand, within Psyr_2154at 2510.712 kb on + strand, within Psyr_2154at 2510.712 kb on + strand, within Psyr_2154at 2510.712 kb on + strand, within Psyr_2154at 2510.712 kb on + strand, within Psyr_2154at 2510.712 kb on + strand, within Psyr_2154at 2510.713 kb on - strand, within Psyr_2154at 2510.763 kb on - strand, within Psyr_2154at 2511.281 kb on - strandat 2511.286 kb on + strandat 2511.286 kb on + strandat 2511.287 kb on - strandat 2511.287 kb on - strandat 2511.289 kb on + strandat 2511.289 kb on + strandat 2511.289 kb on + strandat 2511.289 kb on + strandat 2511.289 kb on + strandat 2511.290 kb on - strandat 2511.290 kb on - strandat 2511.290 kb on - strandat 2511.290 kb on - strandat 2511.795 kb on + strand, within Psyr_2155at 2511.796 kb on - strand, within Psyr_2155at 2511.810 kb on + strand, within Psyr_2155at 2511.980 kb on + strand, within Psyr_2155at 2511.981 kb on - strand, within Psyr_2155at 2511.981 kb on - strand, within Psyr_2155at 2512.165 kb on + strandat 2512.387 kb on - strand, within Psyr_2156at 2512.387 kb on - strand, within Psyr_2156at 2512.550 kb on + strandat 2512.551 kb on - strandat 2512.551 kb on - strandat 2512.551 kb on - strandat 2512.555 kb on + strandat 2512.555 kb on + strandat 2512.556 kb on - strandat 2512.586 kb on + strandat 2512.586 kb on + strandat 2512.586 kb on + strandat 2512.586 kb on + strandat 2512.587 kb on - strandat 2512.589 kb on + strandat 2512.590 kb on - strandat 2512.612 kb on - strandat 2512.612 kb on - strandat 2512.754 kb on + strand, within Psyr_2157at 2512.755 kb on - strand, within Psyr_2157at 2512.889 kb on - strand, within Psyr_2157at 2512.889 kb on - strand, within Psyr_2157at 2512.927 kb on + strand, within Psyr_2157at 2512.928 kb on - strand, within Psyr_2157at 2512.928 kb on - strand, within Psyr_2157at 2513.053 kb on - strand, within Psyr_2157at 2513.178 kb on + strand, within Psyr_2157

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Gossypol-Acetic Acid Complex 10 mM
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2,510,352 + Psyr_2154 0.13 +0.9
2,510,352 + Psyr_2154 0.13 -0.6
2,510,353 - Psyr_2154 0.13 -2.1
2,510,436 + Psyr_2154 0.21 -0.6
2,510,437 - Psyr_2154 0.21 +0.3
2,510,539 - Psyr_2154 0.31 -1.2
2,510,629 + Psyr_2154 0.40 +0.6
2,510,629 + Psyr_2154 0.40 -1.2
2,510,630 - Psyr_2154 0.40 -0.7
2,510,630 - Psyr_2154 0.40 -1.1
2,510,630 - Psyr_2154 0.40 +0.1
2,510,633 + Psyr_2154 0.41 +0.4
2,510,633 + Psyr_2154 0.41 +0.0
2,510,633 + Psyr_2154 0.41 +0.2
2,510,633 + -0.6
2,510,634 - Psyr_2154 0.41 -0.6
2,510,712 + Psyr_2154 0.48 -0.2
2,510,712 + Psyr_2154 0.48 +0.0
2,510,712 + Psyr_2154 0.48 -1.0
2,510,712 + Psyr_2154 0.48 +0.7
2,510,712 + Psyr_2154 0.48 +1.6
2,510,713 - Psyr_2154 0.48 -0.8
2,510,763 - Psyr_2154 0.53 -0.6
2,511,281 - -0.4
2,511,286 + +0.4
2,511,286 + +0.4
2,511,287 - +0.2
2,511,287 - -1.5
2,511,289 + +0.5
2,511,289 + -0.3
2,511,289 + -1.8
2,511,289 + -1.0
2,511,289 + +1.4
2,511,290 - -0.6
2,511,290 - +0.2
2,511,290 - +0.7
2,511,290 - +0.3
2,511,795 + Psyr_2155 0.57 -0.4
2,511,796 - Psyr_2155 0.57 -0.6
2,511,810 + Psyr_2155 0.59 -1.6
2,511,980 + Psyr_2155 0.77 -0.2
2,511,981 - Psyr_2155 0.78 -0.3
2,511,981 - Psyr_2155 0.78 -1.6
2,512,165 + -1.0
2,512,387 - Psyr_2156 0.50 -1.0
2,512,387 - Psyr_2156 0.50 -0.8
2,512,550 + -0.6
2,512,551 - -0.9
2,512,551 - +0.4
2,512,551 - -1.4
2,512,555 + -1.7
2,512,555 + +0.3
2,512,556 - -0.2
2,512,586 + -1.0
2,512,586 + -1.0
2,512,586 + -0.3
2,512,586 + -2.9
2,512,587 - +0.1
2,512,589 + +0.0
2,512,590 - +0.3
2,512,612 - -3.4
2,512,612 - +0.3
2,512,754 + Psyr_2157 0.14 +0.4
2,512,755 - Psyr_2157 0.14 -1.6
2,512,889 - Psyr_2157 0.27 -0.2
2,512,889 - Psyr_2157 0.27 -0.6
2,512,927 + Psyr_2157 0.31 -1.3
2,512,928 - Psyr_2157 0.31 -0.9
2,512,928 - Psyr_2157 0.31 +1.5
2,513,053 - Psyr_2157 0.43 -0.5
2,513,178 + Psyr_2157 0.55 +0.6

Or see this region's nucleotide sequence