Experiment: KB with Gossypol-Acetic Acid Complex 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2154 and Psyr_2155 are separated by 30 nucleotides Psyr_2155 and Psyr_2156 overlap by 4 nucleotides Psyr_2156 and Psyr_2157 are separated by 23 nucleotides
Psyr_2154: Psyr_2154 - transcriptional regulator, LacI family, at 2,510,220 to 2,511,236
_2154
Psyr_2155: Psyr_2155 - Carbohydrate kinase, PfkB, at 2,511,267 to 2,512,187
_2155
Psyr_2156: Psyr_2156 - RbsD or FucU transport, at 2,512,184 to 2,512,588
_2156
Psyr_2157: Psyr_2157 - Inosine/uridine-preferring nucleoside hydrolase, at 2,512,612 to 2,513,637
_2157
Position (kb)
2511
2512
2513 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2510.352 kb on + strand, within Psyr_2154 at 2510.352 kb on + strand, within Psyr_2154 at 2510.353 kb on - strand, within Psyr_2154 at 2510.436 kb on + strand, within Psyr_2154 at 2510.437 kb on - strand, within Psyr_2154 at 2510.539 kb on - strand, within Psyr_2154 at 2510.629 kb on + strand, within Psyr_2154 at 2510.629 kb on + strand, within Psyr_2154 at 2510.630 kb on - strand, within Psyr_2154 at 2510.630 kb on - strand, within Psyr_2154 at 2510.630 kb on - strand, within Psyr_2154 at 2510.633 kb on + strand, within Psyr_2154 at 2510.633 kb on + strand, within Psyr_2154 at 2510.633 kb on + strand, within Psyr_2154 at 2510.633 kb on + strand at 2510.634 kb on - strand, within Psyr_2154 at 2510.712 kb on + strand, within Psyr_2154 at 2510.712 kb on + strand, within Psyr_2154 at 2510.712 kb on + strand, within Psyr_2154 at 2510.712 kb on + strand, within Psyr_2154 at 2510.712 kb on + strand, within Psyr_2154 at 2510.713 kb on - strand, within Psyr_2154 at 2510.763 kb on - strand, within Psyr_2154 at 2511.281 kb on - strand at 2511.286 kb on + strand at 2511.286 kb on + strand at 2511.287 kb on - strand at 2511.287 kb on - strand at 2511.289 kb on + strand at 2511.289 kb on + strand at 2511.289 kb on + strand at 2511.289 kb on + strand at 2511.289 kb on + strand at 2511.290 kb on - strand at 2511.290 kb on - strand at 2511.290 kb on - strand at 2511.290 kb on - strand at 2511.795 kb on + strand, within Psyr_2155 at 2511.796 kb on - strand, within Psyr_2155 at 2511.810 kb on + strand, within Psyr_2155 at 2511.980 kb on + strand, within Psyr_2155 at 2511.981 kb on - strand, within Psyr_2155 at 2511.981 kb on - strand, within Psyr_2155 at 2512.165 kb on + strand at 2512.387 kb on - strand, within Psyr_2156 at 2512.387 kb on - strand, within Psyr_2156 at 2512.550 kb on + strand at 2512.551 kb on - strand at 2512.551 kb on - strand at 2512.551 kb on - strand at 2512.555 kb on + strand at 2512.555 kb on + strand at 2512.556 kb on - strand at 2512.586 kb on + strand at 2512.586 kb on + strand at 2512.586 kb on + strand at 2512.586 kb on + strand at 2512.587 kb on - strand at 2512.589 kb on + strand at 2512.590 kb on - strand at 2512.612 kb on - strand at 2512.612 kb on - strand at 2512.754 kb on + strand, within Psyr_2157 at 2512.755 kb on - strand, within Psyr_2157 at 2512.889 kb on - strand, within Psyr_2157 at 2512.889 kb on - strand, within Psyr_2157 at 2512.927 kb on + strand, within Psyr_2157 at 2512.928 kb on - strand, within Psyr_2157 at 2512.928 kb on - strand, within Psyr_2157 at 2513.053 kb on - strand, within Psyr_2157 at 2513.178 kb on + strand, within Psyr_2157
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Gossypol-Acetic Acid Complex 10 mM remove 2,510,352 + Psyr_2154 0.13 +0.9 2,510,352 + Psyr_2154 0.13 -0.6 2,510,353 - Psyr_2154 0.13 -2.1 2,510,436 + Psyr_2154 0.21 -0.6 2,510,437 - Psyr_2154 0.21 +0.3 2,510,539 - Psyr_2154 0.31 -1.2 2,510,629 + Psyr_2154 0.40 +0.6 2,510,629 + Psyr_2154 0.40 -1.2 2,510,630 - Psyr_2154 0.40 -0.7 2,510,630 - Psyr_2154 0.40 -1.1 2,510,630 - Psyr_2154 0.40 +0.1 2,510,633 + Psyr_2154 0.41 +0.4 2,510,633 + Psyr_2154 0.41 +0.0 2,510,633 + Psyr_2154 0.41 +0.2 2,510,633 + -0.6 2,510,634 - Psyr_2154 0.41 -0.6 2,510,712 + Psyr_2154 0.48 -0.2 2,510,712 + Psyr_2154 0.48 +0.0 2,510,712 + Psyr_2154 0.48 -1.0 2,510,712 + Psyr_2154 0.48 +0.7 2,510,712 + Psyr_2154 0.48 +1.6 2,510,713 - Psyr_2154 0.48 -0.8 2,510,763 - Psyr_2154 0.53 -0.6 2,511,281 - -0.4 2,511,286 + +0.4 2,511,286 + +0.4 2,511,287 - +0.2 2,511,287 - -1.5 2,511,289 + +0.5 2,511,289 + -0.3 2,511,289 + -1.8 2,511,289 + -1.0 2,511,289 + +1.4 2,511,290 - -0.6 2,511,290 - +0.2 2,511,290 - +0.7 2,511,290 - +0.3 2,511,795 + Psyr_2155 0.57 -0.4 2,511,796 - Psyr_2155 0.57 -0.6 2,511,810 + Psyr_2155 0.59 -1.6 2,511,980 + Psyr_2155 0.77 -0.2 2,511,981 - Psyr_2155 0.78 -0.3 2,511,981 - Psyr_2155 0.78 -1.6 2,512,165 + -1.0 2,512,387 - Psyr_2156 0.50 -1.0 2,512,387 - Psyr_2156 0.50 -0.8 2,512,550 + -0.6 2,512,551 - -0.9 2,512,551 - +0.4 2,512,551 - -1.4 2,512,555 + -1.7 2,512,555 + +0.3 2,512,556 - -0.2 2,512,586 + -1.0 2,512,586 + -1.0 2,512,586 + -0.3 2,512,586 + -2.9 2,512,587 - +0.1 2,512,589 + +0.0 2,512,590 - +0.3 2,512,612 - -3.4 2,512,612 - +0.3 2,512,754 + Psyr_2157 0.14 +0.4 2,512,755 - Psyr_2157 0.14 -1.6 2,512,889 - Psyr_2157 0.27 -0.2 2,512,889 - Psyr_2157 0.27 -0.6 2,512,927 + Psyr_2157 0.31 -1.3 2,512,928 - Psyr_2157 0.31 -0.9 2,512,928 - Psyr_2157 0.31 +1.5 2,513,053 - Psyr_2157 0.43 -0.5 2,513,178 + Psyr_2157 0.55 +0.6
Or see this region's nucleotide sequence