Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1223

Experiment: KB with Gossypol-Acetic Acid Complex 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1221 and Psyr_1222 are separated by 34 nucleotidesPsyr_1222 and Psyr_1223 are separated by 17 nucleotidesPsyr_1223 and Psyr_1224 are separated by 208 nucleotides Psyr_1221: Psyr_1221 - CDS, at 1,380,378 to 1,381,406 _1221 Psyr_1222: Psyr_1222 - CDS, at 1,381,441 to 1,381,911 _1222 Psyr_1223: Psyr_1223 - CDS, at 1,381,929 to 1,382,288 _1223 Psyr_1224: Psyr_1224 - type III effector HopZ3, at 1,382,497 to 1,383,732 _1224 Position (kb) 1381 1382 1383Strain fitness (log2 ratio) -2 -1 0 1 2at 1380.930 kb on + strand, within Psyr_1221at 1380.930 kb on + strand, within Psyr_1221at 1380.930 kb on + strand, within Psyr_1221at 1380.930 kb on + strand, within Psyr_1221at 1380.930 kb on + strand, within Psyr_1221at 1380.930 kb on + strand, within Psyr_1221at 1380.930 kb on + strand, within Psyr_1221at 1380.931 kb on - strand, within Psyr_1221at 1380.931 kb on - strand, within Psyr_1221at 1380.931 kb on - strand, within Psyr_1221at 1380.931 kb on - strand, within Psyr_1221at 1380.931 kb on - strand, within Psyr_1221at 1380.931 kb on - strand, within Psyr_1221at 1380.931 kb on - strand, within Psyr_1221at 1380.957 kb on + strand, within Psyr_1221at 1380.957 kb on + strand, within Psyr_1221at 1380.957 kb on + strand, within Psyr_1221at 1380.985 kb on + strand, within Psyr_1221at 1380.985 kb on + strand, within Psyr_1221at 1380.985 kb on + strand, within Psyr_1221at 1380.986 kb on - strand, within Psyr_1221at 1380.986 kb on - strand, within Psyr_1221at 1380.986 kb on - strand, within Psyr_1221at 1381.022 kb on - strand, within Psyr_1221at 1381.070 kb on - strandat 1381.070 kb on - strand, within Psyr_1221at 1381.114 kb on - strand, within Psyr_1221at 1381.114 kb on - strand, within Psyr_1221at 1381.158 kb on + strand, within Psyr_1221at 1381.158 kb on + strand, within Psyr_1221at 1381.158 kb on + strand, within Psyr_1221at 1381.159 kb on - strand, within Psyr_1221at 1381.159 kb on - strand, within Psyr_1221at 1381.288 kb on - strand, within Psyr_1221at 1381.308 kb on + strandat 1381.308 kb on + strandat 1381.308 kb on + strandat 1381.308 kb on + strandat 1381.308 kb on + strandat 1381.308 kb on + strandat 1381.308 kb on + strandat 1381.309 kb on - strandat 1381.309 kb on - strandat 1381.309 kb on - strandat 1381.309 kb on - strandat 1381.309 kb on - strandat 1381.311 kb on + strandat 1381.348 kb on + strandat 1381.348 kb on + strandat 1381.348 kb on + strandat 1381.348 kb on + strandat 1381.348 kb on + strandat 1381.348 kb on + strandat 1381.348 kb on + strandat 1381.349 kb on - strandat 1381.349 kb on - strandat 1381.349 kb on - strandat 1381.349 kb on - strandat 1381.349 kb on - strandat 1381.349 kb on - strandat 1381.349 kb on - strandat 1381.349 kb on - strandat 1381.375 kb on - strandat 1381.460 kb on + strandat 1381.474 kb on - strandat 1381.474 kb on - strandat 1381.474 kb on - strandat 1381.773 kb on + strand, within Psyr_1222at 1381.773 kb on + strand, within Psyr_1222at 1381.774 kb on - strand, within Psyr_1222at 1381.774 kb on - strand, within Psyr_1222at 1381.867 kb on - strandat 1381.921 kb on + strandat 1381.921 kb on + strandat 1381.922 kb on - strandat 1381.922 kb on - strandat 1381.923 kb on + strandat 1382.113 kb on + strand, within Psyr_1223at 1382.249 kb on - strand, within Psyr_1223at 1382.254 kb on + strandat 1382.254 kb on + strandat 1382.255 kb on - strandat 1382.255 kb on - strandat 1382.255 kb on - strandat 1382.372 kb on - strandat 1382.426 kb on + strandat 1382.427 kb on - strandat 1382.427 kb on - strandat 1382.469 kb on + strandat 1382.548 kb on + strandat 1382.548 kb on + strandat 1382.549 kb on - strandat 1382.574 kb on + strandat 1382.580 kb on + strandat 1382.580 kb on + strandat 1382.629 kb on + strand, within Psyr_1224at 1382.632 kb on + strand, within Psyr_1224at 1382.632 kb on + strand, within Psyr_1224at 1382.664 kb on + strand, within Psyr_1224at 1382.664 kb on + strand, within Psyr_1224at 1382.701 kb on + strand, within Psyr_1224at 1382.903 kb on - strand, within Psyr_1224at 1382.923 kb on + strand, within Psyr_1224at 1382.923 kb on + strand, within Psyr_1224at 1382.923 kb on + strand, within Psyr_1224at 1382.923 kb on + strand, within Psyr_1224at 1382.924 kb on - strand, within Psyr_1224at 1382.924 kb on - strand, within Psyr_1224at 1382.924 kb on - strand, within Psyr_1224at 1382.924 kb on - strand, within Psyr_1224at 1382.924 kb on - strand, within Psyr_1224at 1382.924 kb on - strand, within Psyr_1224at 1382.924 kb on - strand, within Psyr_1224at 1382.924 kb on - strand, within Psyr_1224at 1382.924 kb on - strand, within Psyr_1224at 1382.924 kb on - strand, within Psyr_1224at 1382.926 kb on - strand, within Psyr_1224at 1382.998 kb on + strand, within Psyr_1224at 1382.998 kb on + strand, within Psyr_1224at 1382.998 kb on + strand, within Psyr_1224at 1382.998 kb on + strand, within Psyr_1224at 1382.999 kb on - strand, within Psyr_1224at 1382.999 kb on - strand, within Psyr_1224at 1382.999 kb on - strand, within Psyr_1224at 1382.999 kb on - strand, within Psyr_1224at 1383.000 kb on + strand, within Psyr_1224at 1383.001 kb on - strand, within Psyr_1224at 1383.032 kb on + strand, within Psyr_1224at 1383.045 kb on + strand, within Psyr_1224at 1383.126 kb on + strand, within Psyr_1224at 1383.153 kb on + strand, within Psyr_1224at 1383.154 kb on - strand, within Psyr_1224at 1383.204 kb on + strand, within Psyr_1224at 1383.257 kb on + strand, within Psyr_1224at 1383.273 kb on + strand, within Psyr_1224at 1383.287 kb on - strand, within Psyr_1224

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Gossypol-Acetic Acid Complex 10 mM
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1,380,930 + Psyr_1221 0.54 -0.2
1,380,930 + Psyr_1221 0.54 +0.4
1,380,930 + Psyr_1221 0.54 -0.4
1,380,930 + Psyr_1221 0.54 +1.2
1,380,930 + Psyr_1221 0.54 -0.2
1,380,930 + Psyr_1221 0.54 -0.4
1,380,930 + Psyr_1221 0.54 -0.1
1,380,931 - Psyr_1221 0.54 -2.2
1,380,931 - Psyr_1221 0.54 +1.0
1,380,931 - Psyr_1221 0.54 -1.1
1,380,931 - Psyr_1221 0.54 +0.6
1,380,931 - Psyr_1221 0.54 -1.0
1,380,931 - Psyr_1221 0.54 +0.0
1,380,931 - Psyr_1221 0.54 +0.3
1,380,957 + Psyr_1221 0.56 +0.5
1,380,957 + Psyr_1221 0.56 +0.2
1,380,957 + Psyr_1221 0.56 +0.0
1,380,985 + Psyr_1221 0.59 +0.2
1,380,985 + Psyr_1221 0.59 -0.8
1,380,985 + Psyr_1221 0.59 +1.5
1,380,986 - Psyr_1221 0.59 +0.3
1,380,986 - Psyr_1221 0.59 +0.0
1,380,986 - Psyr_1221 0.59 +0.4
1,381,022 - Psyr_1221 0.63 -0.3
1,381,070 - +1.2
1,381,070 - Psyr_1221 0.67 -1.1
1,381,114 - Psyr_1221 0.72 -0.5
1,381,114 - Psyr_1221 0.72 -2.3
1,381,158 + Psyr_1221 0.76 +0.6
1,381,158 + Psyr_1221 0.76 -0.1
1,381,158 + Psyr_1221 0.76 -0.1
1,381,159 - Psyr_1221 0.76 -0.9
1,381,159 - Psyr_1221 0.76 -0.9
1,381,288 - Psyr_1221 0.88 -1.5
1,381,308 + +0.7
1,381,308 + -1.4
1,381,308 + +0.2
1,381,308 + +0.3
1,381,308 + +0.3
1,381,308 + -0.9
1,381,308 + -1.7
1,381,309 - +0.6
1,381,309 - -0.3
1,381,309 - -0.5
1,381,309 - -0.2
1,381,309 - -0.0
1,381,311 + +0.2
1,381,348 + -0.2
1,381,348 + +0.2
1,381,348 + +0.5
1,381,348 + +0.0
1,381,348 + +0.2
1,381,348 + +0.4
1,381,348 + +0.6
1,381,349 - +0.3
1,381,349 - -0.0
1,381,349 - +0.4
1,381,349 - +0.2
1,381,349 - -0.9
1,381,349 - -0.3
1,381,349 - -0.0
1,381,349 - -0.2
1,381,375 - +0.6
1,381,460 + +1.6
1,381,474 - +0.1
1,381,474 - +0.2
1,381,474 - -0.2
1,381,773 + Psyr_1222 0.70 +0.2
1,381,773 + Psyr_1222 0.70 +1.4
1,381,774 - Psyr_1222 0.71 -1.0
1,381,774 - Psyr_1222 0.71 +0.8
1,381,867 - -0.8
1,381,921 + +1.0
1,381,921 + +1.8
1,381,922 - -0.2
1,381,922 - +0.2
1,381,923 + +0.8
1,382,113 + Psyr_1223 0.51 +0.7
1,382,249 - Psyr_1223 0.89 +0.2
1,382,254 + -0.2
1,382,254 + +0.4
1,382,255 - -0.3
1,382,255 - -0.1
1,382,255 - +0.4
1,382,372 - +1.2
1,382,426 + -0.9
1,382,427 - -0.5
1,382,427 - +0.1
1,382,469 + -0.8
1,382,548 + +0.9
1,382,548 + +0.0
1,382,549 - -1.5
1,382,574 + -1.0
1,382,580 + -0.8
1,382,580 + +1.2
1,382,629 + Psyr_1224 0.11 -1.2
1,382,632 + Psyr_1224 0.11 +0.3
1,382,632 + Psyr_1224 0.11 +0.4
1,382,664 + Psyr_1224 0.14 -1.1
1,382,664 + Psyr_1224 0.14 -1.7
1,382,701 + Psyr_1224 0.17 -0.5
1,382,903 - Psyr_1224 0.33 +0.8
1,382,923 + Psyr_1224 0.34 -2.0
1,382,923 + Psyr_1224 0.34 +0.4
1,382,923 + Psyr_1224 0.34 +0.6
1,382,923 + Psyr_1224 0.34 -1.2
1,382,924 - Psyr_1224 0.35 +0.5
1,382,924 - Psyr_1224 0.35 +0.2
1,382,924 - Psyr_1224 0.35 -0.8
1,382,924 - Psyr_1224 0.35 +0.1
1,382,924 - Psyr_1224 0.35 +0.1
1,382,924 - Psyr_1224 0.35 -0.1
1,382,924 - Psyr_1224 0.35 +1.6
1,382,924 - Psyr_1224 0.35 -0.3
1,382,924 - Psyr_1224 0.35 -1.1
1,382,924 - Psyr_1224 0.35 -0.3
1,382,926 - Psyr_1224 0.35 +0.9
1,382,998 + Psyr_1224 0.41 -1.7
1,382,998 + Psyr_1224 0.41 -0.4
1,382,998 + Psyr_1224 0.41 -1.3
1,382,998 + Psyr_1224 0.41 -0.9
1,382,999 - Psyr_1224 0.41 -0.8
1,382,999 - Psyr_1224 0.41 +1.9
1,382,999 - Psyr_1224 0.41 +0.2
1,382,999 - Psyr_1224 0.41 -1.5
1,383,000 + Psyr_1224 0.41 -0.6
1,383,001 - Psyr_1224 0.41 -0.2
1,383,032 + Psyr_1224 0.43 -0.1
1,383,045 + Psyr_1224 0.44 +0.4
1,383,126 + Psyr_1224 0.51 -1.1
1,383,153 + Psyr_1224 0.53 -1.2
1,383,154 - Psyr_1224 0.53 +0.4
1,383,204 + Psyr_1224 0.57 -1.4
1,383,257 + Psyr_1224 0.61 -1.3
1,383,273 + Psyr_1224 0.63 -0.6
1,383,287 - Psyr_1224 0.64 -1.8

Or see this region's nucleotide sequence