Experiment: KB with Gossypol-Acetic Acid Complex 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0324 and Psyr_0325 are separated by 611 nucleotides Psyr_0325 and Psyr_0326 are separated by 213 nucleotides Psyr_0326 and Psyr_0327 are separated by 83 nucleotides
Psyr_0324: Psyr_0324 - transcriptional regulator, AraC family, at 342,094 to 343,086
_0324
Psyr_0325: Psyr_0325 - General substrate transporter:TonB box, N-terminal, at 343,698 to 345,008
_0325
Psyr_0326: Psyr_0326 - Protein of unknown function DUF1234, at 345,222 to 345,803
_0326
Psyr_0327: Psyr_0327 - Sigma-54 factor, interaction region, at 345,887 to 346,837
_0327
Position (kb) 343
344
345
346 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 342.722 kb on + strand, within Psyr_0324 at 342.784 kb on + strand, within Psyr_0324 at 342.784 kb on + strand, within Psyr_0324 at 342.784 kb on + strand, within Psyr_0324 at 342.784 kb on + strand, within Psyr_0324 at 342.785 kb on - strand, within Psyr_0324 at 342.785 kb on - strand, within Psyr_0324 at 342.785 kb on - strand, within Psyr_0324 at 342.831 kb on + strand, within Psyr_0324 at 342.831 kb on + strand, within Psyr_0324 at 342.831 kb on + strand, within Psyr_0324 at 342.832 kb on - strand, within Psyr_0324 at 342.832 kb on - strand, within Psyr_0324 at 342.832 kb on - strand, within Psyr_0324 at 342.832 kb on - strand, within Psyr_0324 at 342.832 kb on - strand, within Psyr_0324 at 342.985 kb on + strand, within Psyr_0324 at 342.985 kb on + strand, within Psyr_0324 at 342.986 kb on - strand, within Psyr_0324 at 342.986 kb on - strand, within Psyr_0324 at 342.986 kb on - strand, within Psyr_0324 at 343.032 kb on + strand at 343.033 kb on - strand at 343.276 kb on + strand at 343.276 kb on + strand at 343.276 kb on + strand at 343.278 kb on + strand at 343.279 kb on - strand at 343.279 kb on - strand at 343.298 kb on - strand at 343.425 kb on + strand at 343.425 kb on + strand at 343.494 kb on + strand at 343.529 kb on + strand at 343.563 kb on + strand at 343.612 kb on + strand at 343.676 kb on + strand at 343.677 kb on - strand at 343.682 kb on + strand at 343.683 kb on - strand at 343.683 kb on - strand at 343.705 kb on + strand at 343.705 kb on + strand at 343.705 kb on + strand at 343.705 kb on + strand at 343.705 kb on + strand at 343.706 kb on - strand at 343.706 kb on - strand at 343.706 kb on - strand at 343.706 kb on - strand at 343.706 kb on - strand at 343.761 kb on + strand at 343.761 kb on + strand at 343.761 kb on + strand at 343.761 kb on + strand at 343.762 kb on - strand at 343.762 kb on - strand at 343.762 kb on - strand at 343.762 kb on - strand at 343.762 kb on - strand at 343.762 kb on - strand at 343.834 kb on - strand, within Psyr_0325 at 343.893 kb on + strand, within Psyr_0325 at 343.893 kb on + strand, within Psyr_0325 at 343.893 kb on + strand, within Psyr_0325 at 343.894 kb on - strand, within Psyr_0325 at 343.894 kb on - strand, within Psyr_0325 at 343.894 kb on - strand, within Psyr_0325 at 344.247 kb on + strand, within Psyr_0325 at 344.247 kb on + strand, within Psyr_0325 at 344.247 kb on + strand, within Psyr_0325 at 344.247 kb on + strand, within Psyr_0325 at 344.247 kb on + strand, within Psyr_0325 at 344.247 kb on + strand, within Psyr_0325 at 344.247 kb on + strand, within Psyr_0325 at 344.247 kb on + strand, within Psyr_0325 at 344.295 kb on + strand, within Psyr_0325 at 344.295 kb on + strand, within Psyr_0325 at 344.295 kb on + strand, within Psyr_0325 at 344.295 kb on + strand, within Psyr_0325 at 344.295 kb on + strand, within Psyr_0325 at 344.296 kb on - strand, within Psyr_0325 at 344.296 kb on - strand, within Psyr_0325 at 344.296 kb on - strand, within Psyr_0325 at 344.296 kb on - strand, within Psyr_0325 at 344.296 kb on - strand, within Psyr_0325 at 344.296 kb on - strand, within Psyr_0325 at 344.375 kb on + strand, within Psyr_0325 at 344.375 kb on + strand, within Psyr_0325 at 344.376 kb on - strand, within Psyr_0325 at 344.452 kb on - strand, within Psyr_0325 at 344.537 kb on - strand, within Psyr_0325 at 344.571 kb on + strand, within Psyr_0325 at 344.571 kb on + strand, within Psyr_0325 at 344.571 kb on + strand, within Psyr_0325 at 344.572 kb on - strand, within Psyr_0325 at 344.572 kb on - strand, within Psyr_0325 at 344.572 kb on - strand, within Psyr_0325 at 344.572 kb on - strand, within Psyr_0325 at 344.734 kb on - strand, within Psyr_0325 at 344.946 kb on + strand at 344.947 kb on - strand at 344.947 kb on - strand at 344.947 kb on - strand at 344.947 kb on - strand at 345.018 kb on - strand at 345.065 kb on - strand at 345.181 kb on + strand at 345.181 kb on + strand at 345.182 kb on - strand at 345.182 kb on - strand at 345.182 kb on - strand at 345.182 kb on - strand at 345.182 kb on - strand at 345.182 kb on - strand at 345.183 kb on + strand at 345.183 kb on + strand at 345.184 kb on - strand at 345.202 kb on + strand at 345.202 kb on + strand at 345.202 kb on + strand at 345.202 kb on + strand at 345.202 kb on + strand at 345.202 kb on + strand at 345.202 kb on + strand at 345.202 kb on + strand at 345.202 kb on + strand at 345.202 kb on + strand at 345.202 kb on + strand at 345.202 kb on + strand at 345.202 kb on + strand at 345.202 kb on + strand at 345.202 kb on + strand at 345.202 kb on + strand at 345.202 kb on + strand at 345.202 kb on + strand at 345.202 kb on + strand at 345.202 kb on + strand at 345.202 kb on + strand at 345.203 kb on - strand at 345.203 kb on - strand at 345.203 kb on - strand at 345.203 kb on - strand at 345.203 kb on - strand at 345.203 kb on - strand at 345.203 kb on - strand at 345.203 kb on - strand at 345.203 kb on - strand at 345.203 kb on - strand at 345.203 kb on - strand at 345.203 kb on - strand at 345.203 kb on - strand at 345.203 kb on - strand at 345.203 kb on - strand at 345.203 kb on - strand at 345.203 kb on - strand at 345.203 kb on - strand at 345.203 kb on - strand at 345.583 kb on + strand, within Psyr_0326 at 345.583 kb on + strand, within Psyr_0326 at 345.583 kb on + strand, within Psyr_0326 at 345.583 kb on + strand, within Psyr_0326 at 345.583 kb on + strand, within Psyr_0326 at 345.583 kb on + strand, within Psyr_0326 at 345.583 kb on + strand, within Psyr_0326 at 345.584 kb on - strand, within Psyr_0326 at 345.584 kb on - strand, within Psyr_0326 at 345.584 kb on - strand, within Psyr_0326 at 345.679 kb on + strand, within Psyr_0326 at 345.680 kb on - strand, within Psyr_0326 at 345.704 kb on + strand, within Psyr_0326 at 345.704 kb on + strand, within Psyr_0326 at 345.705 kb on - strand, within Psyr_0326 at 345.705 kb on - strand, within Psyr_0326 at 345.705 kb on - strand, within Psyr_0326 at 345.705 kb on - strand, within Psyr_0326 at 345.751 kb on - strand at 345.757 kb on - strand at 345.846 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Gossypol-Acetic Acid Complex 10 mM remove 342,722 + Psyr_0324 0.63 -0.0 342,784 + Psyr_0324 0.69 -0.7 342,784 + Psyr_0324 0.69 +0.8 342,784 + Psyr_0324 0.69 +0.4 342,784 + Psyr_0324 0.69 +0.2 342,785 - Psyr_0324 0.70 +0.2 342,785 - Psyr_0324 0.70 -0.7 342,785 - Psyr_0324 0.70 -0.6 342,831 + Psyr_0324 0.74 -0.4 342,831 + Psyr_0324 0.74 -1.6 342,831 + Psyr_0324 0.74 +1.0 342,832 - Psyr_0324 0.74 +0.4 342,832 - Psyr_0324 0.74 +0.4 342,832 - Psyr_0324 0.74 -0.4 342,832 - Psyr_0324 0.74 -1.4 342,832 - Psyr_0324 0.74 -0.3 342,985 + Psyr_0324 0.90 +1.2 342,985 + Psyr_0324 0.90 +1.1 342,986 - Psyr_0324 0.90 +0.0 342,986 - Psyr_0324 0.90 -0.3 342,986 - Psyr_0324 0.90 +0.5 343,032 + -0.0 343,033 - -0.1 343,276 + -1.0 343,276 + -0.6 343,276 + -0.2 343,278 + -1.1 343,279 - -0.5 343,279 - +0.6 343,298 - -1.2 343,425 + +0.6 343,425 + +0.5 343,494 + +0.4 343,529 + +0.3 343,563 + -0.1 343,612 + -1.2 343,676 + +0.6 343,677 - +0.8 343,682 + -0.3 343,683 - +1.0 343,683 - -1.6 343,705 + -0.3 343,705 + +1.8 343,705 + +1.4 343,705 + +0.2 343,705 + -0.4 343,706 - -0.4 343,706 - +0.6 343,706 - -0.3 343,706 - -0.9 343,706 - +0.4 343,761 + +0.2 343,761 + -0.4 343,761 + +1.4 343,761 + -0.1 343,762 - -0.1 343,762 - -0.5 343,762 - +0.1 343,762 - +0.1 343,762 - +1.4 343,762 - +0.1 343,834 - Psyr_0325 0.10 -0.6 343,893 + Psyr_0325 0.15 -0.1 343,893 + Psyr_0325 0.15 +0.5 343,893 + Psyr_0325 0.15 +0.1 343,894 - Psyr_0325 0.15 +0.4 343,894 - Psyr_0325 0.15 -0.3 343,894 - Psyr_0325 0.15 -0.2 344,247 + Psyr_0325 0.42 +0.1 344,247 + Psyr_0325 0.42 -0.2 344,247 + Psyr_0325 0.42 -0.8 344,247 + Psyr_0325 0.42 +0.4 344,247 + Psyr_0325 0.42 -0.4 344,247 + Psyr_0325 0.42 -0.6 344,247 + Psyr_0325 0.42 -0.0 344,247 + Psyr_0325 0.42 +1.7 344,295 + Psyr_0325 0.46 +0.9 344,295 + Psyr_0325 0.46 -0.5 344,295 + Psyr_0325 0.46 +0.6 344,295 + Psyr_0325 0.46 +0.7 344,295 + Psyr_0325 0.46 +0.8 344,296 - Psyr_0325 0.46 +0.6 344,296 - Psyr_0325 0.46 +3.0 344,296 - Psyr_0325 0.46 +0.5 344,296 - Psyr_0325 0.46 -0.7 344,296 - Psyr_0325 0.46 +1.0 344,296 - Psyr_0325 0.46 -0.4 344,375 + Psyr_0325 0.52 -2.3 344,375 + Psyr_0325 0.52 +0.5 344,376 - Psyr_0325 0.52 +0.2 344,452 - Psyr_0325 0.58 -0.0 344,537 - Psyr_0325 0.64 +0.7 344,571 + Psyr_0325 0.67 -0.8 344,571 + Psyr_0325 0.67 -0.8 344,571 + Psyr_0325 0.67 -0.2 344,572 - Psyr_0325 0.67 -1.3 344,572 - Psyr_0325 0.67 +0.6 344,572 - Psyr_0325 0.67 +0.0 344,572 - Psyr_0325 0.67 -0.1 344,734 - Psyr_0325 0.79 -0.9 344,946 + +0.6 344,947 - -0.9 344,947 - -1.1 344,947 - -2.3 344,947 - +0.0 345,018 - -0.5 345,065 - -0.3 345,181 + -0.2 345,181 + +0.4 345,182 - +0.0 345,182 - +0.1 345,182 - -0.8 345,182 - -0.4 345,182 - -0.2 345,182 - -0.4 345,183 + -1.0 345,183 + +0.0 345,184 - -0.1 345,202 + -1.1 345,202 + +0.7 345,202 + -0.2 345,202 + -0.6 345,202 + -1.2 345,202 + -0.1 345,202 + -0.1 345,202 + -0.2 345,202 + -0.2 345,202 + +0.8 345,202 + +0.4 345,202 + -1.2 345,202 + -0.7 345,202 + -0.7 345,202 + -0.2 345,202 + -0.4 345,202 + +0.7 345,202 + -1.4 345,202 + +0.1 345,202 + +0.4 345,202 + +0.9 345,203 - +0.5 345,203 - -1.0 345,203 - -1.2 345,203 - -0.3 345,203 - +0.7 345,203 - +1.4 345,203 - +0.6 345,203 - +0.7 345,203 - -1.5 345,203 - +0.4 345,203 - -0.5 345,203 - +1.0 345,203 - +0.3 345,203 - -0.6 345,203 - +0.9 345,203 - +0.1 345,203 - -0.8 345,203 - +0.7 345,203 - +0.2 345,583 + Psyr_0326 0.62 -0.0 345,583 + Psyr_0326 0.62 -0.7 345,583 + Psyr_0326 0.62 +0.2 345,583 + Psyr_0326 0.62 -0.2 345,583 + Psyr_0326 0.62 -0.0 345,583 + Psyr_0326 0.62 +0.3 345,583 + Psyr_0326 0.62 +0.3 345,584 - Psyr_0326 0.62 -1.2 345,584 - Psyr_0326 0.62 +0.7 345,584 - Psyr_0326 0.62 -0.1 345,679 + Psyr_0326 0.79 +1.1 345,680 - Psyr_0326 0.79 +1.2 345,704 + Psyr_0326 0.83 -0.4 345,704 + Psyr_0326 0.83 -0.2 345,705 - Psyr_0326 0.83 -0.2 345,705 - Psyr_0326 0.83 +0.3 345,705 - Psyr_0326 0.83 +0.4 345,705 - Psyr_0326 0.83 -0.4 345,751 - +1.4 345,757 - +0.2 345,846 - -0.9
Or see this region's nucleotide sequence