Experiment: carbon source Sucrose 0.25mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_820 and Pf1N1B4_821 are separated by 212 nucleotides Pf1N1B4_821 and Pf1N1B4_822 are separated by 759 nucleotides
Pf1N1B4_820 - Glucose-selective porin OprB, at 938,142 to 939,479
_820
Pf1N1B4_821 - Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2), at 939,692 to 942,100
_821
Pf1N1B4_822 - ATP-dependent protease La (EC 3.4.21.53) Type I, at 942,860 to 945,277
_822
Position (kb) 939
940
941
942
943 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 938.718 kb on + strand, within Pf1N1B4_820 at 938.718 kb on + strand, within Pf1N1B4_820 at 938.719 kb on - strand, within Pf1N1B4_820 at 938.757 kb on + strand, within Pf1N1B4_820 at 938.757 kb on + strand, within Pf1N1B4_820 at 938.757 kb on + strand, within Pf1N1B4_820 at 938.757 kb on + strand, within Pf1N1B4_820 at 938.758 kb on - strand, within Pf1N1B4_820 at 938.758 kb on - strand, within Pf1N1B4_820 at 938.758 kb on - strand, within Pf1N1B4_820 at 938.797 kb on - strand, within Pf1N1B4_820 at 938.934 kb on + strand, within Pf1N1B4_820 at 938.935 kb on - strand, within Pf1N1B4_820 at 938.937 kb on + strand, within Pf1N1B4_820 at 938.937 kb on + strand, within Pf1N1B4_820 at 938.937 kb on + strand, within Pf1N1B4_820 at 938.937 kb on + strand, within Pf1N1B4_820 at 938.937 kb on + strand, within Pf1N1B4_820 at 938.937 kb on + strand, within Pf1N1B4_820 at 938.938 kb on - strand, within Pf1N1B4_820 at 938.940 kb on + strand, within Pf1N1B4_820 at 938.940 kb on + strand, within Pf1N1B4_820 at 938.940 kb on + strand, within Pf1N1B4_820 at 938.940 kb on + strand, within Pf1N1B4_820 at 938.941 kb on - strand, within Pf1N1B4_820 at 938.941 kb on - strand, within Pf1N1B4_820 at 938.967 kb on + strand, within Pf1N1B4_820 at 938.967 kb on + strand, within Pf1N1B4_820 at 938.967 kb on + strand, within Pf1N1B4_820 at 938.967 kb on + strand, within Pf1N1B4_820 at 938.968 kb on - strand, within Pf1N1B4_820 at 939.149 kb on + strand at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.174 kb on + strand, within Pf1N1B4_820 at 939.174 kb on + strand at 939.175 kb on - strand, within Pf1N1B4_820 at 939.352 kb on - strand at 939.354 kb on + strand at 939.402 kb on + strand at 939.402 kb on + strand at 939.402 kb on + strand at 939.402 kb on + strand at 939.402 kb on + strand at 939.403 kb on - strand at 939.403 kb on - strand at 939.403 kb on - strand at 939.477 kb on + strand at 939.477 kb on + strand at 939.478 kb on - strand at 939.478 kb on - strand at 939.478 kb on - strand at 939.527 kb on + strand at 939.613 kb on + strand at 939.613 kb on + strand at 939.613 kb on + strand at 939.614 kb on - strand at 939.614 kb on - strand at 939.614 kb on - strand at 939.643 kb on + strand at 939.643 kb on + strand at 939.643 kb on + strand at 939.643 kb on + strand at 939.643 kb on + strand at 939.644 kb on - strand at 939.644 kb on - strand at 939.644 kb on - strand at 939.644 kb on - strand at 939.664 kb on + strand at 939.668 kb on + strand at 939.668 kb on + strand at 939.668 kb on + strand at 939.668 kb on + strand at 939.669 kb on - strand at 939.669 kb on - strand at 939.669 kb on - strand at 939.669 kb on - strand at 939.669 kb on - strand at 939.691 kb on + strand at 939.691 kb on + strand at 939.691 kb on + strand at 939.691 kb on + strand at 939.691 kb on + strand at 939.692 kb on - strand at 939.692 kb on - strand at 939.692 kb on - strand at 939.692 kb on - strand at 939.692 kb on - strand at 939.692 kb on - strand at 939.692 kb on - strand at 939.756 kb on + strand at 939.756 kb on + strand at 939.757 kb on - strand at 939.757 kb on - strand at 939.757 kb on - strand at 939.757 kb on - strand at 939.759 kb on + strand at 939.760 kb on - strand at 939.818 kb on + strand at 939.818 kb on + strand at 939.818 kb on + strand at 939.819 kb on - strand at 939.819 kb on - strand at 939.819 kb on - strand at 939.821 kb on + strand at 939.821 kb on + strand at 939.919 kb on + strand at 940.244 kb on + strand, within Pf1N1B4_821 at 940.304 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821 at 940.529 kb on + strand, within Pf1N1B4_821 at 940.742 kb on + strand, within Pf1N1B4_821 at 940.745 kb on + strand, within Pf1N1B4_821 at 940.745 kb on + strand, within Pf1N1B4_821 at 940.746 kb on - strand, within Pf1N1B4_821 at 940.746 kb on - strand, within Pf1N1B4_821 at 940.746 kb on - strand, within Pf1N1B4_821 at 940.931 kb on + strand, within Pf1N1B4_821 at 940.932 kb on - strand, within Pf1N1B4_821 at 940.963 kb on - strand, within Pf1N1B4_821 at 940.994 kb on + strand, within Pf1N1B4_821 at 940.994 kb on + strand, within Pf1N1B4_821 at 940.995 kb on - strand, within Pf1N1B4_821 at 940.995 kb on - strand, within Pf1N1B4_821 at 940.995 kb on - strand, within Pf1N1B4_821 at 940.995 kb on - strand, within Pf1N1B4_821 at 940.995 kb on - strand, within Pf1N1B4_821 at 941.237 kb on + strand, within Pf1N1B4_821 at 941.237 kb on + strand, within Pf1N1B4_821 at 941.237 kb on + strand, within Pf1N1B4_821 at 941.237 kb on + strand, within Pf1N1B4_821 at 941.238 kb on - strand, within Pf1N1B4_821 at 941.238 kb on - strand, within Pf1N1B4_821 at 941.238 kb on - strand, within Pf1N1B4_821 at 941.238 kb on - strand at 941.238 kb on - strand, within Pf1N1B4_821 at 941.238 kb on - strand, within Pf1N1B4_821 at 941.238 kb on - strand, within Pf1N1B4_821 at 941.238 kb on - strand, within Pf1N1B4_821 at 941.318 kb on + strand, within Pf1N1B4_821 at 941.318 kb on + strand, within Pf1N1B4_821 at 941.319 kb on - strand, within Pf1N1B4_821 at 941.525 kb on - strand, within Pf1N1B4_821 at 941.571 kb on - strand, within Pf1N1B4_821 at 941.571 kb on - strand, within Pf1N1B4_821 at 941.738 kb on + strand, within Pf1N1B4_821 at 941.909 kb on + strand at 941.921 kb on + strand at 941.993 kb on + strand at 941.993 kb on + strand at 941.994 kb on - strand at 941.994 kb on - strand at 941.994 kb on - strand at 941.994 kb on - strand at 942.017 kb on + strand at 942.017 kb on + strand at 942.017 kb on + strand at 942.017 kb on + strand at 942.017 kb on + strand at 942.018 kb on - strand at 942.018 kb on - strand at 942.018 kb on - strand at 942.018 kb on - strand at 942.018 kb on - strand at 942.018 kb on - strand at 942.018 kb on - strand at 942.071 kb on + strand at 942.071 kb on + strand at 942.071 kb on + strand at 942.071 kb on + strand at 942.071 kb on + strand at 942.072 kb on - strand at 942.072 kb on - strand at 942.072 kb on - strand at 942.072 kb on - strand at 942.072 kb on - strand at 942.083 kb on + strand at 942.084 kb on - strand at 942.084 kb on - strand at 942.084 kb on - strand at 942.191 kb on + strand at 942.224 kb on + strand at 942.234 kb on + strand at 942.234 kb on + strand at 942.234 kb on + strand at 942.362 kb on + strand at 942.363 kb on - strand at 942.363 kb on - strand at 942.704 kb on + strand at 942.704 kb on + strand at 942.708 kb on + strand at 942.708 kb on + strand at 942.708 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Sucrose 0.25mM remove 938,718 + Pf1N1B4_820 0.43 -0.3 938,718 + Pf1N1B4_820 0.43 +0.8 938,719 - Pf1N1B4_820 0.43 -0.3 938,757 + Pf1N1B4_820 0.46 +0.5 938,757 + Pf1N1B4_820 0.46 -1.8 938,757 + Pf1N1B4_820 0.46 -2.0 938,757 + Pf1N1B4_820 0.46 -1.2 938,758 - Pf1N1B4_820 0.46 +2.3 938,758 - Pf1N1B4_820 0.46 -0.8 938,758 - Pf1N1B4_820 0.46 -2.3 938,797 - Pf1N1B4_820 0.49 -0.9 938,934 + Pf1N1B4_820 0.59 -0.0 938,935 - Pf1N1B4_820 0.59 +1.6 938,937 + Pf1N1B4_820 0.59 -1.0 938,937 + Pf1N1B4_820 0.59 -2.4 938,937 + Pf1N1B4_820 0.59 -2.4 938,937 + Pf1N1B4_820 0.59 -0.6 938,937 + Pf1N1B4_820 0.59 -1.8 938,937 + Pf1N1B4_820 0.59 -1.5 938,938 - Pf1N1B4_820 0.59 +1.3 938,940 + Pf1N1B4_820 0.60 -1.3 938,940 + Pf1N1B4_820 0.60 -0.3 938,940 + Pf1N1B4_820 0.60 -2.8 938,940 + Pf1N1B4_820 0.60 -0.0 938,941 - Pf1N1B4_820 0.60 +1.4 938,941 - Pf1N1B4_820 0.60 -0.9 938,967 + Pf1N1B4_820 0.62 -1.8 938,967 + Pf1N1B4_820 0.62 -1.4 938,967 + Pf1N1B4_820 0.62 -2.5 938,967 + Pf1N1B4_820 0.62 -0.0 938,968 - Pf1N1B4_820 0.62 -0.2 939,149 + +0.2 939,153 + Pf1N1B4_820 0.76 -0.1 939,153 + Pf1N1B4_820 0.76 -1.5 939,153 + Pf1N1B4_820 0.76 +0.9 939,153 + Pf1N1B4_820 0.76 +0.8 939,153 + Pf1N1B4_820 0.76 -0.8 939,153 + Pf1N1B4_820 0.76 +0.9 939,153 + Pf1N1B4_820 0.76 -0.6 939,153 + Pf1N1B4_820 0.76 +0.8 939,153 + Pf1N1B4_820 0.76 +1.6 939,153 + Pf1N1B4_820 0.76 +3.0 939,153 + Pf1N1B4_820 0.76 -2.0 939,153 + Pf1N1B4_820 0.76 -1.8 939,153 + Pf1N1B4_820 0.76 +0.7 939,153 + Pf1N1B4_820 0.76 +1.1 939,154 - Pf1N1B4_820 0.76 -2.2 939,154 - Pf1N1B4_820 0.76 +3.0 939,154 - Pf1N1B4_820 0.76 -1.4 939,154 - Pf1N1B4_820 0.76 +2.1 939,154 - Pf1N1B4_820 0.76 -1.4 939,154 - Pf1N1B4_820 0.76 +0.5 939,154 - Pf1N1B4_820 0.76 +0.6 939,174 + Pf1N1B4_820 0.77 +0.9 939,174 + +2.1 939,175 - Pf1N1B4_820 0.77 +2.3 939,352 - +2.0 939,354 + +0.9 939,402 + -1.0 939,402 + +3.0 939,402 + -0.6 939,402 + +0.6 939,402 + -1.5 939,403 - -1.1 939,403 - -1.0 939,403 - -0.1 939,477 + -1.8 939,477 + -1.0 939,478 - +0.6 939,478 - -0.4 939,478 - -1.6 939,527 + -1.0 939,613 + -1.8 939,613 + -2.4 939,613 + +0.7 939,614 - +0.4 939,614 - -0.6 939,614 - -2.5 939,643 + -1.7 939,643 + -1.8 939,643 + -2.4 939,643 + +1.4 939,643 + +1.7 939,644 - +3.6 939,644 - -2.4 939,644 - -0.2 939,644 - +1.1 939,664 + +1.3 939,668 + -0.7 939,668 + +2.1 939,668 + +1.0 939,668 + +1.1 939,669 - -1.3 939,669 - -0.4 939,669 - -1.5 939,669 - +0.4 939,669 - +1.3 939,691 + +1.3 939,691 + -0.8 939,691 + +2.6 939,691 + -1.1 939,691 + -1.4 939,692 - -2.4 939,692 - +3.0 939,692 - +2.1 939,692 - -2.0 939,692 - -0.8 939,692 - +0.7 939,692 - +1.4 939,756 + +0.6 939,756 + -2.2 939,757 - +1.5 939,757 - -2.2 939,757 - -2.1 939,757 - -2.1 939,759 + -0.6 939,760 - +3.4 939,818 + -1.0 939,818 + -0.5 939,818 + +0.1 939,819 - -1.3 939,819 - -0.5 939,819 - -3.1 939,821 + +2.0 939,821 + -0.3 939,919 + +1.7 940,244 + Pf1N1B4_821 0.23 -0.6 940,304 + Pf1N1B4_821 0.25 +0.5 940,388 + Pf1N1B4_821 0.29 +2.0 940,388 + Pf1N1B4_821 0.29 +2.4 940,388 + Pf1N1B4_821 0.29 -1.5 940,388 + Pf1N1B4_821 0.29 +0.5 940,388 + Pf1N1B4_821 0.29 +2.0 940,388 + Pf1N1B4_821 0.29 -0.9 940,388 + Pf1N1B4_821 0.29 +0.2 940,388 + Pf1N1B4_821 0.29 -1.3 940,388 + Pf1N1B4_821 0.29 -2.2 940,389 - Pf1N1B4_821 0.29 +0.1 940,389 - Pf1N1B4_821 0.29 -1.2 940,389 - Pf1N1B4_821 0.29 -1.2 940,389 - Pf1N1B4_821 0.29 +0.7 940,389 - Pf1N1B4_821 0.29 -0.9 940,389 - Pf1N1B4_821 0.29 +0.5 940,389 - Pf1N1B4_821 0.29 +2.5 940,529 + Pf1N1B4_821 0.35 -2.8 940,742 + Pf1N1B4_821 0.44 +1.8 940,745 + Pf1N1B4_821 0.44 +1.1 940,745 + Pf1N1B4_821 0.44 +1.0 940,746 - Pf1N1B4_821 0.44 -1.8 940,746 - Pf1N1B4_821 0.44 +2.9 940,746 - Pf1N1B4_821 0.44 -1.3 940,931 + Pf1N1B4_821 0.51 -1.8 940,932 - Pf1N1B4_821 0.51 +0.6 940,963 - Pf1N1B4_821 0.53 +1.9 940,994 + Pf1N1B4_821 0.54 -0.9 940,994 + Pf1N1B4_821 0.54 +0.9 940,995 - Pf1N1B4_821 0.54 +1.4 940,995 - Pf1N1B4_821 0.54 +1.1 940,995 - Pf1N1B4_821 0.54 +1.0 940,995 - Pf1N1B4_821 0.54 +4.4 940,995 - Pf1N1B4_821 0.54 -1.6 941,237 + Pf1N1B4_821 0.64 -2.4 941,237 + Pf1N1B4_821 0.64 -0.1 941,237 + Pf1N1B4_821 0.64 -2.0 941,237 + Pf1N1B4_821 0.64 +1.0 941,238 - Pf1N1B4_821 0.64 -0.0 941,238 - Pf1N1B4_821 0.64 +2.0 941,238 - Pf1N1B4_821 0.64 +0.8 941,238 - +1.1 941,238 - Pf1N1B4_821 0.64 -1.9 941,238 - Pf1N1B4_821 0.64 +0.2 941,238 - Pf1N1B4_821 0.64 -0.6 941,238 - Pf1N1B4_821 0.64 -0.2 941,318 + Pf1N1B4_821 0.67 -1.3 941,318 + Pf1N1B4_821 0.67 +1.4 941,319 - Pf1N1B4_821 0.68 -1.4 941,525 - Pf1N1B4_821 0.76 +0.8 941,571 - Pf1N1B4_821 0.78 +1.9 941,571 - Pf1N1B4_821 0.78 +0.6 941,738 + Pf1N1B4_821 0.85 +0.4 941,909 + -0.7 941,921 + -0.3 941,993 + -1.5 941,993 + +0.5 941,994 - +0.5 941,994 - -1.2 941,994 - -1.7 941,994 - +1.3 942,017 + -2.2 942,017 + -0.0 942,017 + -1.8 942,017 + -0.4 942,017 + +0.9 942,018 - -1.5 942,018 - -0.1 942,018 - -2.1 942,018 - +0.7 942,018 - -1.3 942,018 - -0.9 942,018 - -2.0 942,071 + +1.0 942,071 + -1.1 942,071 + +0.2 942,071 + -0.3 942,071 + -1.6 942,072 - +1.9 942,072 - +1.8 942,072 - +1.0 942,072 - -1.7 942,072 - +1.1 942,083 + +0.4 942,084 - +1.9 942,084 - -0.3 942,084 - +1.2 942,191 + -1.6 942,224 + +1.6 942,234 + -1.6 942,234 + -0.6 942,234 + +1.4 942,362 + +1.4 942,363 - +1.8 942,363 - -1.2 942,704 + +1.1 942,704 + +1.0 942,708 + -1.3 942,708 + -1.2 942,708 + +2.6
Or see this region's nucleotide sequence