Experiment: carbon source Sucrose 0.25mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_728 and Pf1N1B4_729 are separated by 66 nucleotides Pf1N1B4_729 and Pf1N1B4_730 are separated by 169 nucleotides Pf1N1B4_730 and Pf1N1B4_731 are separated by 130 nucleotides
Pf1N1B4_728 - FxsA protein, at 831,620 to 832,096
_728
Pf1N1B4_729 - Putative heme iron utilization protein, at 832,163 to 832,894
_729
Pf1N1B4_730 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 833,064 to 833,822
_730
Pf1N1B4_731 - Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like, at 833,953 to 835,047
_731
Position (kb) 833
834 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 832.070 kb on + strand at 832.071 kb on - strand at 832.139 kb on - strand at 832.139 kb on - strand at 832.139 kb on - strand at 832.246 kb on + strand, within Pf1N1B4_729 at 832.246 kb on + strand, within Pf1N1B4_729 at 832.361 kb on + strand, within Pf1N1B4_729 at 832.361 kb on + strand, within Pf1N1B4_729 at 832.361 kb on + strand, within Pf1N1B4_729 at 832.361 kb on + strand, within Pf1N1B4_729 at 832.361 kb on + strand, within Pf1N1B4_729 at 832.361 kb on + strand, within Pf1N1B4_729 at 832.361 kb on + strand, within Pf1N1B4_729 at 832.361 kb on + strand, within Pf1N1B4_729 at 832.361 kb on + strand, within Pf1N1B4_729 at 832.362 kb on - strand, within Pf1N1B4_729 at 832.362 kb on - strand, within Pf1N1B4_729 at 832.365 kb on + strand, within Pf1N1B4_729 at 832.365 kb on + strand, within Pf1N1B4_729 at 832.366 kb on - strand, within Pf1N1B4_729 at 832.491 kb on + strand, within Pf1N1B4_729 at 832.492 kb on - strand, within Pf1N1B4_729 at 832.492 kb on - strand, within Pf1N1B4_729 at 832.502 kb on + strand, within Pf1N1B4_729 at 832.502 kb on + strand, within Pf1N1B4_729 at 832.503 kb on - strand, within Pf1N1B4_729 at 832.503 kb on - strand, within Pf1N1B4_729 at 832.545 kb on + strand at 832.545 kb on + strand, within Pf1N1B4_729 at 832.545 kb on + strand, within Pf1N1B4_729 at 832.575 kb on + strand, within Pf1N1B4_729 at 832.576 kb on - strand, within Pf1N1B4_729 at 832.635 kb on + strand, within Pf1N1B4_729 at 832.635 kb on + strand, within Pf1N1B4_729 at 832.636 kb on - strand, within Pf1N1B4_729 at 832.636 kb on - strand, within Pf1N1B4_729 at 832.658 kb on + strand, within Pf1N1B4_729 at 832.658 kb on + strand, within Pf1N1B4_729 at 832.658 kb on + strand, within Pf1N1B4_729 at 832.658 kb on + strand, within Pf1N1B4_729 at 832.658 kb on + strand, within Pf1N1B4_729 at 832.658 kb on + strand, within Pf1N1B4_729 at 832.658 kb on + strand, within Pf1N1B4_729 at 832.658 kb on + strand at 832.658 kb on + strand, within Pf1N1B4_729 at 832.659 kb on - strand, within Pf1N1B4_729 at 832.659 kb on - strand, within Pf1N1B4_729 at 832.659 kb on - strand, within Pf1N1B4_729 at 832.742 kb on + strand, within Pf1N1B4_729 at 832.742 kb on + strand, within Pf1N1B4_729 at 832.742 kb on + strand, within Pf1N1B4_729 at 832.742 kb on + strand, within Pf1N1B4_729 at 832.742 kb on + strand, within Pf1N1B4_729 at 832.742 kb on + strand, within Pf1N1B4_729 at 832.742 kb on + strand, within Pf1N1B4_729 at 832.742 kb on + strand, within Pf1N1B4_729 at 832.743 kb on - strand, within Pf1N1B4_729 at 832.743 kb on - strand at 832.744 kb on + strand, within Pf1N1B4_729 at 832.744 kb on + strand, within Pf1N1B4_729 at 832.744 kb on + strand, within Pf1N1B4_729 at 832.779 kb on + strand, within Pf1N1B4_729 at 832.884 kb on - strand at 832.897 kb on + strand at 832.907 kb on + strand at 832.907 kb on + strand at 832.907 kb on + strand at 832.907 kb on + strand at 832.907 kb on + strand at 832.907 kb on + strand at 832.908 kb on - strand at 832.908 kb on - strand at 832.910 kb on - strand at 832.910 kb on - strand at 832.911 kb on + strand at 832.911 kb on + strand at 832.911 kb on + strand at 832.911 kb on + strand at 832.911 kb on + strand at 832.912 kb on - strand at 832.912 kb on - strand at 832.993 kb on + strand at 833.019 kb on + strand at 833.020 kb on - strand at 833.020 kb on - strand at 833.024 kb on + strand at 833.024 kb on + strand at 833.024 kb on + strand at 833.024 kb on + strand at 833.025 kb on - strand at 833.025 kb on - strand at 833.025 kb on - strand at 833.025 kb on - strand at 833.025 kb on - strand at 833.025 kb on - strand at 833.049 kb on + strand at 833.083 kb on + strand at 833.084 kb on - strand at 833.113 kb on + strand at 833.113 kb on + strand at 833.133 kb on + strand at 833.133 kb on + strand at 833.238 kb on + strand, within Pf1N1B4_730 at 833.239 kb on - strand at 833.276 kb on + strand, within Pf1N1B4_730 at 833.276 kb on + strand at 833.276 kb on + strand, within Pf1N1B4_730 at 833.504 kb on + strand, within Pf1N1B4_730 at 833.504 kb on + strand, within Pf1N1B4_730 at 833.504 kb on + strand, within Pf1N1B4_730 at 833.504 kb on + strand, within Pf1N1B4_730 at 833.504 kb on + strand, within Pf1N1B4_730 at 833.504 kb on + strand, within Pf1N1B4_730 at 833.505 kb on - strand at 833.547 kb on + strand, within Pf1N1B4_730 at 833.547 kb on + strand, within Pf1N1B4_730 at 833.547 kb on + strand, within Pf1N1B4_730 at 833.547 kb on + strand, within Pf1N1B4_730 at 833.548 kb on - strand, within Pf1N1B4_730 at 833.548 kb on - strand, within Pf1N1B4_730 at 833.548 kb on - strand, within Pf1N1B4_730 at 833.757 kb on + strand at 833.758 kb on - strand at 833.758 kb on - strand at 833.775 kb on + strand at 833.775 kb on + strand at 833.775 kb on + strand at 833.775 kb on + strand at 833.775 kb on + strand at 833.776 kb on - strand at 833.776 kb on - strand at 833.776 kb on - strand at 833.776 kb on - strand at 833.778 kb on + strand at 833.778 kb on + strand at 833.778 kb on + strand at 833.778 kb on + strand at 833.778 kb on + strand at 833.778 kb on + strand at 833.778 kb on + strand at 833.779 kb on - strand at 833.779 kb on - strand at 833.820 kb on + strand at 833.820 kb on + strand at 833.821 kb on - strand at 833.883 kb on + strand at 833.883 kb on + strand at 833.883 kb on + strand at 833.884 kb on - strand at 833.884 kb on - strand at 833.897 kb on + strand at 833.898 kb on - strand at 833.898 kb on - strand at 833.899 kb on + strand at 833.899 kb on + strand at 833.899 kb on + strand at 833.900 kb on - strand at 833.954 kb on + strand at 833.955 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Sucrose 0.25mM remove 832,070 + -1.9 832,071 - +0.5 832,139 - -0.7 832,139 - +1.4 832,139 - -2.2 832,246 + Pf1N1B4_729 0.11 +0.0 832,246 + Pf1N1B4_729 0.11 -1.5 832,361 + Pf1N1B4_729 0.27 +1.3 832,361 + Pf1N1B4_729 0.27 +1.1 832,361 + Pf1N1B4_729 0.27 +2.0 832,361 + Pf1N1B4_729 0.27 -0.3 832,361 + Pf1N1B4_729 0.27 +3.7 832,361 + Pf1N1B4_729 0.27 +1.5 832,361 + Pf1N1B4_729 0.27 -2.2 832,361 + Pf1N1B4_729 0.27 +1.9 832,361 + Pf1N1B4_729 0.27 +2.3 832,362 - Pf1N1B4_729 0.27 +1.1 832,362 - Pf1N1B4_729 0.27 +0.5 832,365 + Pf1N1B4_729 0.28 +0.2 832,365 + Pf1N1B4_729 0.28 -1.1 832,366 - Pf1N1B4_729 0.28 -1.8 832,491 + Pf1N1B4_729 0.45 +1.9 832,492 - Pf1N1B4_729 0.45 -0.1 832,492 - Pf1N1B4_729 0.45 +1.6 832,502 + Pf1N1B4_729 0.46 -0.1 832,502 + Pf1N1B4_729 0.46 +3.4 832,503 - Pf1N1B4_729 0.46 +0.1 832,503 - Pf1N1B4_729 0.46 -0.1 832,545 + +0.1 832,545 + Pf1N1B4_729 0.52 +0.9 832,545 + Pf1N1B4_729 0.52 -1.7 832,575 + Pf1N1B4_729 0.56 +3.0 832,576 - Pf1N1B4_729 0.56 +0.1 832,635 + Pf1N1B4_729 0.64 -0.3 832,635 + Pf1N1B4_729 0.64 +0.2 832,636 - Pf1N1B4_729 0.65 -1.8 832,636 - Pf1N1B4_729 0.65 +1.2 832,658 + Pf1N1B4_729 0.68 -1.7 832,658 + Pf1N1B4_729 0.68 +1.2 832,658 + Pf1N1B4_729 0.68 +3.3 832,658 + Pf1N1B4_729 0.68 +1.7 832,658 + Pf1N1B4_729 0.68 +0.3 832,658 + Pf1N1B4_729 0.68 -1.4 832,658 + Pf1N1B4_729 0.68 +2.8 832,658 + +2.5 832,658 + Pf1N1B4_729 0.68 -1.2 832,659 - Pf1N1B4_729 0.68 -1.4 832,659 - Pf1N1B4_729 0.68 +1.2 832,659 - Pf1N1B4_729 0.68 +2.8 832,742 + Pf1N1B4_729 0.79 -1.9 832,742 + Pf1N1B4_729 0.79 -1.5 832,742 + Pf1N1B4_729 0.79 +4.1 832,742 + Pf1N1B4_729 0.79 -0.1 832,742 + Pf1N1B4_729 0.79 -0.5 832,742 + Pf1N1B4_729 0.79 +1.2 832,742 + Pf1N1B4_729 0.79 +1.5 832,742 + Pf1N1B4_729 0.79 -2.3 832,743 - Pf1N1B4_729 0.79 +1.2 832,743 - -1.0 832,744 + Pf1N1B4_729 0.79 +3.0 832,744 + Pf1N1B4_729 0.79 -1.2 832,744 + Pf1N1B4_729 0.79 +0.0 832,779 + Pf1N1B4_729 0.84 -0.0 832,884 - -2.0 832,897 + +1.0 832,907 + -1.3 832,907 + -2.5 832,907 + -1.5 832,907 + +2.2 832,907 + -2.4 832,907 + -1.8 832,908 - -0.6 832,908 - -1.3 832,910 - -1.5 832,910 - +0.3 832,911 + -1.2 832,911 + -2.2 832,911 + +2.4 832,911 + -2.1 832,911 + -0.6 832,912 - -1.8 832,912 - +0.6 832,993 + -0.6 833,019 + +1.9 833,020 - -0.1 833,020 - +0.1 833,024 + +3.1 833,024 + -1.6 833,024 + +0.0 833,024 + -1.7 833,025 - -0.9 833,025 - -0.7 833,025 - +3.5 833,025 - +2.3 833,025 - -1.5 833,025 - +1.1 833,049 + -2.0 833,083 + -0.1 833,084 - -1.1 833,113 + -1.3 833,113 + -0.4 833,133 + +1.9 833,133 + +1.6 833,238 + Pf1N1B4_730 0.23 -1.0 833,239 - +0.8 833,276 + Pf1N1B4_730 0.28 -1.7 833,276 + +2.3 833,276 + Pf1N1B4_730 0.28 -0.5 833,504 + Pf1N1B4_730 0.58 -0.1 833,504 + Pf1N1B4_730 0.58 +0.2 833,504 + Pf1N1B4_730 0.58 -2.0 833,504 + Pf1N1B4_730 0.58 -2.3 833,504 + Pf1N1B4_730 0.58 -1.0 833,504 + Pf1N1B4_730 0.58 +0.6 833,505 - -1.3 833,547 + Pf1N1B4_730 0.64 -1.4 833,547 + Pf1N1B4_730 0.64 -0.3 833,547 + Pf1N1B4_730 0.64 -1.2 833,547 + Pf1N1B4_730 0.64 -1.5 833,548 - Pf1N1B4_730 0.64 -0.6 833,548 - Pf1N1B4_730 0.64 -0.8 833,548 - Pf1N1B4_730 0.64 -2.2 833,757 + -1.0 833,758 - +1.6 833,758 - -1.7 833,775 + +1.2 833,775 + +1.6 833,775 + -2.6 833,775 + -0.3 833,775 + -0.0 833,776 - -2.5 833,776 - -0.7 833,776 - -0.6 833,776 - +0.2 833,778 + -1.0 833,778 + -1.0 833,778 + +0.1 833,778 + -1.8 833,778 + -2.7 833,778 + -1.8 833,778 + +2.0 833,779 - -1.4 833,779 - -1.2 833,820 + -0.0 833,820 + -0.2 833,821 - +0.5 833,883 + -2.0 833,883 + -2.3 833,883 + +1.8 833,884 - +1.2 833,884 - +0.6 833,897 + -1.3 833,898 - +0.8 833,898 - +1.0 833,899 + -2.1 833,899 + -0.6 833,899 + +1.2 833,900 - -0.4 833,954 + -1.0 833,955 - +1.4
Or see this region's nucleotide sequence