Experiment: carbon source Sucrose 0.25mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5980 and Pf1N1B4_5981 are separated by 239 nucleotides Pf1N1B4_5981 and Pf1N1B4_5982 are separated by 140 nucleotides Pf1N1B4_5982 and Pf1N1B4_5983 are separated by 23 nucleotides
Pf1N1B4_5980 - Organic hydroperoxide resistance protein, at 429,380 to 429,832
_5980
Pf1N1B4_5981 - Organic hydroperoxide resistance transcriptional regulator, at 430,072 to 430,533
_5981
Pf1N1B4_5982 - Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-), at 430,674 to 432,317
_5982
Pf1N1B4_5983 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 432,341 to 434,089
_5983
Position (kb) 430
431
432
433 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 429.684 kb on - strand, within Pf1N1B4_5980 at 429.859 kb on - strand at 429.859 kb on - strand at 429.906 kb on + strand at 429.907 kb on - strand at 429.907 kb on - strand at 429.907 kb on - strand at 429.907 kb on - strand at 429.907 kb on - strand at 429.907 kb on - strand at 430.201 kb on + strand, within Pf1N1B4_5981 at 430.210 kb on + strand, within Pf1N1B4_5981 at 430.540 kb on - strand at 430.563 kb on + strand at 430.619 kb on + strand at 430.706 kb on + strand at 430.707 kb on - strand at 430.707 kb on - strand at 430.707 kb on - strand at 430.707 kb on - strand at 430.707 kb on - strand at 430.707 kb on - strand at 430.710 kb on + strand at 430.731 kb on - strand at 431.108 kb on - strand, within Pf1N1B4_5982 at 431.288 kb on - strand, within Pf1N1B4_5982 at 431.288 kb on - strand, within Pf1N1B4_5982 at 431.345 kb on + strand, within Pf1N1B4_5982 at 431.372 kb on + strand, within Pf1N1B4_5982 at 431.376 kb on + strand, within Pf1N1B4_5982 at 431.376 kb on + strand, within Pf1N1B4_5982 at 431.377 kb on - strand, within Pf1N1B4_5982 at 431.377 kb on - strand, within Pf1N1B4_5982 at 431.377 kb on - strand, within Pf1N1B4_5982 at 431.626 kb on + strand at 431.626 kb on + strand, within Pf1N1B4_5982 at 431.627 kb on - strand, within Pf1N1B4_5982 at 431.627 kb on - strand, within Pf1N1B4_5982 at 431.627 kb on - strand, within Pf1N1B4_5982 at 431.627 kb on - strand, within Pf1N1B4_5982 at 431.723 kb on - strand, within Pf1N1B4_5982 at 431.732 kb on + strand at 431.803 kb on + strand, within Pf1N1B4_5982 at 431.871 kb on + strand, within Pf1N1B4_5982 at 431.872 kb on - strand, within Pf1N1B4_5982 at 431.872 kb on - strand, within Pf1N1B4_5982 at 431.872 kb on - strand, within Pf1N1B4_5982 at 431.872 kb on - strand, within Pf1N1B4_5982 at 431.894 kb on - strand, within Pf1N1B4_5982 at 432.181 kb on + strand at 432.182 kb on - strand at 432.277 kb on + strand at 432.301 kb on - strand at 432.523 kb on - strand, within Pf1N1B4_5983 at 432.523 kb on - strand, within Pf1N1B4_5983 at 432.523 kb on - strand, within Pf1N1B4_5983 at 432.523 kb on - strand, within Pf1N1B4_5983 at 432.529 kb on - strand at 432.798 kb on + strand at 432.798 kb on + strand, within Pf1N1B4_5983 at 432.798 kb on + strand at 432.824 kb on + strand, within Pf1N1B4_5983 at 432.990 kb on + strand, within Pf1N1B4_5983 at 432.991 kb on - strand, within Pf1N1B4_5983 at 433.080 kb on - strand, within Pf1N1B4_5983 at 433.236 kb on + strand at 433.236 kb on + strand, within Pf1N1B4_5983
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Sucrose 0.25mM remove 429,684 - Pf1N1B4_5980 0.67 -0.9 429,859 - -1.1 429,859 - +2.0 429,906 + -1.9 429,907 - -0.9 429,907 - +2.1 429,907 - +3.3 429,907 - +1.8 429,907 - +1.1 429,907 - -1.0 430,201 + Pf1N1B4_5981 0.28 -2.4 430,210 + Pf1N1B4_5981 0.30 -1.1 430,540 - +0.5 430,563 + +0.8 430,619 + +2.0 430,706 + +0.5 430,707 - -3.3 430,707 - +2.0 430,707 - -1.2 430,707 - -1.8 430,707 - -1.5 430,707 - -0.4 430,710 + +2.4 430,731 - +1.8 431,108 - Pf1N1B4_5982 0.26 -2.2 431,288 - Pf1N1B4_5982 0.37 +0.2 431,288 - Pf1N1B4_5982 0.37 -1.9 431,345 + Pf1N1B4_5982 0.41 +0.8 431,372 + Pf1N1B4_5982 0.42 -2.6 431,376 + Pf1N1B4_5982 0.43 -1.8 431,376 + Pf1N1B4_5982 0.43 -1.1 431,377 - Pf1N1B4_5982 0.43 -1.4 431,377 - Pf1N1B4_5982 0.43 -0.5 431,377 - Pf1N1B4_5982 0.43 -0.3 431,626 + -1.2 431,626 + Pf1N1B4_5982 0.58 -1.8 431,627 - Pf1N1B4_5982 0.58 -0.8 431,627 - Pf1N1B4_5982 0.58 +1.0 431,627 - Pf1N1B4_5982 0.58 -3.2 431,627 - Pf1N1B4_5982 0.58 -2.5 431,723 - Pf1N1B4_5982 0.64 -2.6 431,732 + +0.6 431,803 + Pf1N1B4_5982 0.69 -0.5 431,871 + Pf1N1B4_5982 0.73 -1.4 431,872 - Pf1N1B4_5982 0.73 -1.4 431,872 - Pf1N1B4_5982 0.73 -2.4 431,872 - Pf1N1B4_5982 0.73 -2.0 431,872 - Pf1N1B4_5982 0.73 -2.4 431,894 - Pf1N1B4_5982 0.74 -0.7 432,181 + -1.2 432,182 - -2.4 432,277 + +0.2 432,301 - +1.4 432,523 - Pf1N1B4_5983 0.10 +1.3 432,523 - Pf1N1B4_5983 0.10 +2.6 432,523 - Pf1N1B4_5983 0.10 -2.3 432,523 - Pf1N1B4_5983 0.10 +1.3 432,529 - -1.8 432,798 + -0.4 432,798 + Pf1N1B4_5983 0.26 -2.2 432,798 + -1.5 432,824 + Pf1N1B4_5983 0.28 +2.6 432,990 + Pf1N1B4_5983 0.37 -2.2 432,991 - Pf1N1B4_5983 0.37 +0.2 433,080 - Pf1N1B4_5983 0.42 +0.1 433,236 + +0.4 433,236 + Pf1N1B4_5983 0.51 -0.1
Or see this region's nucleotide sequence